Wall clock time and date at job start Sun Mar 29 2020 21:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 119.99773 * 2 1 4 4 N 1.34774 * 119.99724 * 180.02562 * 2 1 3 5 5 C 1.47081 * 120.88033 * 174.40559 * 4 2 1 6 6 C 1.53238 * 108.51826 * 128.83754 * 5 4 2 7 7 N 1.46895 * 109.34225 * 53.83452 * 6 5 4 8 8 C 1.46905 * 111.00128 * 172.74171 * 7 6 5 9 9 C 1.53001 * 109.46980 * 169.99732 * 8 7 6 10 10 C 1.50700 * 109.47183 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99688 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00016 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99692 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47402 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47019 * 120.00042 * 14 12 10 17 17 H 1.48496 * 109.47094 * 239.99808 * 14 12 10 18 18 C 1.46893 * 111.26773 * 296.89365 * 7 6 5 19 19 C 1.47082 * 120.88445 * 354.43436 * 4 2 1 20 20 H 1.09002 * 109.47024 * 184.86236 * 1 2 3 21 21 H 1.09000 * 109.46832 * 304.85837 * 1 2 3 22 22 H 1.08995 * 109.47416 * 64.85966 * 1 2 3 23 23 H 1.09005 * 109.62814 * 9.13056 * 5 4 2 24 24 H 1.08997 * 109.63275 * 248.54942 * 5 4 2 25 25 H 1.09007 * 109.48990 * 173.79660 * 6 5 4 26 26 H 1.08999 * 109.49559 * 293.86760 * 6 5 4 27 27 H 1.08994 * 109.47264 * 289.99967 * 8 7 6 28 28 H 1.09002 * 109.46953 * 50.00104 * 8 7 6 29 29 H 1.08996 * 109.47078 * 300.00686 * 9 8 7 30 30 H 1.09002 * 109.46974 * 60.00385 * 9 8 7 31 31 H 0.97000 * 119.99595 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.49221 * 303.14423 * 18 7 6 33 33 H 1.09000 * 109.51647 * 183.07571 * 18 7 6 34 34 H 1.08992 * 109.62582 * 350.86641 * 19 4 2 35 35 H 1.08999 * 109.62989 * 111.45487 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6463 -1.1928 -0.1236 6 6 4.2147 -2.0567 1.0073 7 7 3.5665 -3.3747 0.9856 8 6 4.2028 -4.2902 1.9421 9 6 3.3567 -5.5581 2.0747 10 6 4.0091 -6.4970 3.0564 11 1 4.9344 -6.2172 3.5380 12 6 3.4247 -7.7132 3.3398 13 7 2.2982 -8.0541 2.7530 14 14 4.2338 -8.8773 4.5563 15 1 5.4838 -8.2637 5.0722 16 1 3.3057 -9.1359 5.6863 17 1 4.5554 -10.1580 3.8769 18 6 2.1245 -3.2636 1.2426 19 6 1.4703 -2.4492 0.1213 20 1 -0.3633 -1.0240 0.0871 21 1 -0.3633 0.5874 0.8433 22 1 -0.3634 0.4366 -0.9303 23 1 4.0384 -0.1790 -0.0423 24 1 3.9255 -1.6203 -1.0866 25 1 5.2890 -2.1773 0.8680 26 1 4.0239 -1.5732 1.9654 27 1 5.1986 -4.5535 1.5857 28 1 4.2817 -3.8029 2.9140 29 1 2.3609 -5.2947 2.4310 30 1 3.2777 -6.0454 1.1029 31 1 1.8873 -8.9099 2.9521 32 1 1.9627 -2.7633 2.1974 33 1 1.6824 -4.2594 1.2742 34 1 0.4238 -2.2660 0.3645 35 1 1.5404 -2.9975 -0.8181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019440970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:01 Heat of formation + Delta-G solvation = -49.903497 kcal Electronic energy + Delta-G solvation = -15875.705110 eV Core-core repulsion = 13293.857493 eV Total energy + Delta-G solvation = -2581.847617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20144 -39.18128 -36.31509 -34.88161 -32.88828 -31.48473 -30.48507 -28.06181 -25.72034 -24.86055 -22.84014 -21.64612 -19.87307 -18.69955 -18.10692 -16.93895 -16.59779 -16.54724 -16.11161 -15.85596 -15.66094 -14.96186 -14.59850 -14.31019 -13.92393 -13.74282 -13.27701 -12.98161 -12.89738 -12.86431 -12.55730 -12.32404 -12.26139 -12.12585 -11.88646 -11.26789 -11.17756 -10.85424 -10.53462 -9.82971 -9.22616 -8.20363 -6.30308 1.40580 1.41831 1.54060 1.56761 1.99491 2.40719 2.98909 3.13838 3.60813 3.92670 3.97446 4.09908 4.18245 4.29989 4.41950 4.53847 4.57153 4.63989 4.69487 4.72501 4.79642 4.89144 5.02586 5.03405 5.15507 5.40995 5.44849 5.65198 5.76866 6.02356 6.17996 6.30227 6.42235 6.85466 7.10133 7.38623 8.91519 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.056803 B = 0.005272 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.809071 B = 5309.842524 C = 5625.451418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.615 5.615 5 C 0.119 3.881 6 C 0.045 3.955 7 N -0.543 5.543 8 C 0.077 3.923 9 C 0.030 3.970 10 C -0.545 4.545 11 H 0.056 0.944 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.034 3.966 19 C 0.115 3.885 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.007 0.993 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 11.534 -5.449 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.484 6.484 4 N -0.348 5.348 5 C -0.004 4.004 6 C -0.084 4.084 7 N -0.268 5.268 8 C -0.050 4.050 9 C -0.007 4.007 10 C -0.584 4.584 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.786 3.214 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.095 4.095 19 C -0.007 4.007 20 H 0.123 0.877 21 H 0.119 0.881 22 H 0.129 0.871 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.205 11.752 -5.930 13.547 hybrid contribution 0.383 -0.593 1.530 1.685 sum -2.821 11.158 -4.400 12.322 Atomic orbital electron populations 1.22060 0.88299 1.06399 1.06319 1.21619 0.92431 0.82177 0.74112 1.90658 1.72018 1.32582 1.53107 1.48446 1.07778 1.06914 1.71650 1.21652 0.79741 1.00188 0.98814 1.22471 1.00062 0.88721 0.97151 1.62052 1.03293 1.10006 1.51450 1.22010 0.98316 0.92927 0.91761 1.19071 0.94643 0.91608 0.95355 1.21634 1.08774 1.02676 1.25316 0.92581 1.25852 0.95483 0.99753 0.98095 1.70074 1.19410 1.22929 1.44340 0.85454 0.78704 0.78575 0.78638 1.18931 1.20378 1.20349 1.22601 0.89039 1.01011 0.96807 1.22152 0.97195 0.82168 0.99210 0.87734 0.88084 0.87112 0.89447 0.89844 0.88640 0.95924 0.91603 0.96592 0.97514 0.98219 0.92699 0.95777 0.89506 0.85757 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.11 71.24 0.72 -1.92 16 2 C 0.51 12.98 7.80 87.66 0.68 13.67 16 3 O -0.60 -20.48 16.55 -3.01 -0.05 -20.53 16 4 N -0.61 -15.61 3.01 -817.94 -2.46 -18.08 16 5 C 0.12 3.13 6.61 86.35 0.57 3.70 16 6 C 0.04 1.30 5.58 86.38 0.48 1.78 16 7 N -0.54 -18.70 4.78 -895.26 -4.28 -22.97 16 8 C 0.08 3.18 5.21 86.30 0.45 3.62 16 9 C 0.03 1.54 4.22 29.85 0.13 1.67 16 10 C -0.55 -30.36 9.11 25.60 0.23 -30.12 16 11 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 14 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 C 0.03 1.08 5.04 86.39 0.44 1.51 16 19 C 0.11 2.63 6.45 86.35 0.56 3.19 16 20 H 0.10 1.16 5.19 -2.39 -0.01 1.15 16 21 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 2.38 7.04 -2.38 -0.02 2.36 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.10 2.52 8.11 -2.38 -0.02 2.50 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.01 0.35 6.18 -2.39 -0.01 0.34 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 3.14 5.73 -2.39 -0.01 3.13 16 34 H 0.12 2.00 5.24 -2.39 -0.01 1.99 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.01 280.84 1.31 -66.71 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.06 Total: 5.79 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.72 Total: -2.08 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -6.45 Total: -95.27 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.01 1.31 -66.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019440970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.804 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds