Wall clock time and date at job start Sun Mar 29 2020 21:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99679 * 2 1 4 4 C 1.50703 * 109.47387 * 66.04415 * 3 2 1 5 5 H 1.07997 * 119.99501 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99829 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00111 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46925 * 59.99826 * 8 6 4 10 10 H 1.48498 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.46716 * 300.00395 * 8 6 4 12 12 C 1.46893 * 110.99883 * 236.04741 * 2 1 3 13 13 C 1.50706 * 109.47176 * 293.94754 * 12 2 1 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00020 * 180.02562 * 13 12 2 16 16 C 1.46496 * 119.99544 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47059 * 180.02562 * 16 15 13 18 18 C 1.53004 * 117.49759 * 243.62370 * 17 16 15 19 19 C 1.52996 * 117.50145 * 175.00164 * 17 16 15 20 20 H 1.09007 * 109.47214 * 183.95845 * 1 2 3 21 21 H 1.09002 * 109.47259 * 303.95383 * 1 2 3 22 22 H 1.08999 * 109.47697 * 63.95865 * 1 2 3 23 23 H 1.08998 * 109.47358 * 186.05143 * 3 2 1 24 24 H 1.09003 * 109.47119 * 306.04487 * 3 2 1 25 25 H 0.97009 * 120.00010 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46739 * 173.95162 * 12 2 1 27 27 H 1.09000 * 109.47767 * 53.95421 * 12 2 1 28 28 H 0.96994 * 119.99756 * 0.02562 * 15 13 12 29 29 H 1.08996 * 109.47366 * 299.99598 * 16 15 13 30 30 H 1.08992 * 109.47635 * 60.00246 * 16 15 13 31 31 H 1.09001 * 115.54850 * 29.32521 * 17 16 15 32 32 H 1.08996 * 117.49992 * 359.97438 * 18 17 16 33 33 H 1.09001 * 117.49660 * 145.01544 * 18 17 16 34 34 H 1.09007 * 117.49716 * 214.97980 * 19 17 16 35 35 H 1.08993 * 117.49910 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0275 3.3492 1.5288 7 7 2.7126 4.0016 0.6153 8 14 1.5837 4.1867 3.1385 9 1 2.1754 3.4289 4.2703 10 1 2.1157 5.5731 3.1384 11 1 0.1064 4.2237 3.2863 12 6 1.9954 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 8 1.0049 -2.5831 -0.0034 15 7 2.0189 -3.1181 -1.9027 16 6 1.6700 -4.5319 -1.7427 17 6 2.2195 -5.3300 -2.9268 18 6 1.2076 -6.0173 -3.8459 19 6 2.0608 -6.8512 -2.8880 20 1 -0.3634 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8524 22 1 -0.3634 0.4511 -0.9233 23 1 3.0796 1.3445 -0.1083 24 1 1.5610 1.9273 -0.8309 25 1 2.9872 4.9178 0.7772 26 1 3.0797 -0.6610 -1.1756 27 1 1.5611 -0.3872 -2.0628 28 1 2.5248 -2.8281 -2.6777 29 1 2.1037 -4.9107 -0.8172 30 1 0.5858 -4.6366 -1.7054 31 1 3.1244 -4.9298 -3.3840 32 1 0.1506 -5.9013 -3.6067 33 1 1.4467 -6.0693 -4.9081 34 1 2.8613 -7.4519 -3.3200 35 1 1.5654 -7.2835 -2.0188 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019834115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:01 Heat of formation + Delta-G solvation = -31.110570 kcal Electronic energy + Delta-G solvation = -15267.329229 eV Core-core repulsion = 12686.296535 eV Total energy + Delta-G solvation = -2581.032695 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85928 -38.58699 -37.57066 -35.11289 -34.62252 -30.45100 -28.99267 -27.53343 -25.73921 -23.23793 -22.59882 -21.98703 -21.02049 -18.64342 -17.85247 -17.48462 -16.83481 -16.52520 -16.04177 -15.63011 -15.44041 -15.01257 -14.74424 -14.24134 -14.14811 -13.61735 -13.27114 -12.79731 -12.63194 -12.58711 -12.38700 -12.35655 -12.33496 -11.96386 -11.47968 -11.38335 -11.12719 -10.64977 -10.59267 -10.01769 -9.01280 -8.20640 -6.29787 1.41637 1.44844 1.52876 1.66740 2.09623 2.42396 2.89690 3.11877 3.40080 3.72062 3.89309 4.01379 4.12780 4.28688 4.32763 4.42707 4.57643 4.67644 4.70469 4.75557 4.82078 5.04399 5.09619 5.15728 5.22072 5.27580 5.27971 5.52875 5.64368 6.02170 6.28421 6.45914 6.69692 6.84605 7.32464 7.39458 8.90082 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.077147 B = 0.004286 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.858032 B = 6531.487573 C = 6670.441722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.035 3.965 13 C 0.518 3.482 14 O -0.565 6.565 15 N -0.716 5.716 16 C 0.152 3.848 17 C -0.172 4.172 18 C -0.175 4.175 19 C -0.168 4.168 20 H 0.072 0.928 21 H 0.054 0.946 22 H 0.014 0.986 23 H 0.014 0.986 24 H -0.028 1.028 25 H 0.266 0.734 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.416 0.584 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -17.593 -10.697 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.082 3.918 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.194 1.194 12 C -0.097 4.097 13 C 0.304 3.696 14 O -0.443 6.443 15 N -0.370 5.370 16 C 0.029 3.971 17 C -0.191 4.191 18 C -0.212 4.212 19 C -0.206 4.206 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.032 0.968 23 H 0.032 0.968 24 H -0.010 1.010 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.253 0.747 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.566 -17.924 -9.612 20.347 hybrid contribution -0.138 1.241 -0.297 1.283 sum -0.704 -16.684 -9.909 19.417 Atomic orbital electron populations 1.22240 0.87538 1.01265 0.99503 1.61690 1.08497 1.15520 1.41000 1.19449 0.94148 0.82856 0.95308 1.21424 1.35149 0.97642 1.02507 0.92554 1.25842 0.94935 0.97832 1.00665 1.70051 1.39114 1.11950 1.36018 0.85463 0.78783 0.77267 0.79263 1.19605 1.20398 1.19430 1.22031 1.02733 0.90627 0.94272 1.20762 0.78438 0.88332 0.82049 1.90630 1.40835 1.81120 1.31714 1.45830 1.57968 1.07595 1.25653 1.20841 0.99200 0.79521 0.97551 1.22396 1.02182 0.95310 0.99174 1.23158 0.96835 1.03569 0.97647 1.23051 1.03380 0.91947 1.02212 0.90976 0.92757 0.96758 0.96787 1.01004 0.92536 0.87223 0.90956 0.74727 0.92494 0.92578 0.85735 0.89023 0.87274 0.87023 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.88 9.03 127.69 1.15 3.03 16 2 N -0.54 -25.24 4.49 -931.64 -4.18 -29.43 16 3 C 0.21 11.27 4.72 85.56 0.40 11.68 16 4 C -0.53 -31.07 8.46 25.60 0.22 -30.85 16 5 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 6 C 0.01 0.32 5.46 84.66 0.46 0.78 16 7 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 8 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.03 1.22 5.45 85.56 0.47 1.69 16 13 C 0.52 17.17 7.56 87.66 0.66 17.83 16 14 O -0.56 -23.65 14.31 -3.02 -0.04 -23.69 16 15 N -0.72 -16.42 5.56 -463.07 -2.57 -18.99 16 16 C 0.15 3.19 5.96 86.38 0.51 3.70 16 17 C -0.17 -2.40 5.85 -10.79 -0.06 -2.46 16 18 C -0.18 -2.13 10.18 30.60 0.31 -1.82 16 19 C -0.17 -2.01 10.25 30.59 0.31 -1.69 16 20 H 0.07 3.06 5.88 -2.38 -0.01 3.05 16 21 H 0.05 2.56 6.76 -2.39 -0.02 2.54 16 22 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.01 0.79 7.93 -2.39 -0.02 0.77 16 24 H -0.03 -1.58 8.12 -2.39 -0.02 -1.60 16 25 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 26 H 0.11 3.55 7.93 -2.39 -0.02 3.53 16 27 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 28 H 0.42 6.72 8.40 -92.71 -0.78 5.94 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.30 7.88 -2.39 -0.02 1.28 16 31 H 0.12 1.41 8.04 -2.39 -0.02 1.39 16 32 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.92 294.63 0.24 -70.68 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.29 Total: 7.93 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 4.44 Total: 1.89 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -6.47 Total: -104.10 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.69 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.92 0.24 -70.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.571 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds