Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 111.00098 * 2 1 4 4 C 1.46901 * 110.99635 * 123.95308 * 2 1 3 5 5 C 1.53039 * 109.44869 * 59.96578 * 4 2 1 6 6 C 1.53195 * 109.30905 * 181.37571 * 5 4 2 7 7 N 1.46925 * 108.77627 * 305.36162 * 6 5 4 8 8 C 1.34778 * 120.62965 * 233.58378 * 7 6 5 9 9 O 1.21691 * 119.99446 * 174.78871 * 8 7 6 10 10 C 1.46373 * 120.00355 * 354.78901 * 8 7 6 11 11 H 1.07996 * 119.99637 * 5.00930 * 10 8 7 12 12 C 1.40044 * 120.00214 * 185.00241 * 10 8 7 13 13 N 1.30678 * 119.99607 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00427 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47019 * 89.99621 * 14 12 10 16 16 H 1.48497 * 109.47539 * 210.00207 * 14 12 10 17 17 H 1.48505 * 109.46633 * 330.00437 * 14 12 10 18 18 C 1.46921 * 118.73704 * 53.61465 * 7 6 5 19 19 C 1.53046 * 109.45665 * 180.02562 * 4 2 1 20 20 H 1.09000 * 109.47102 * 296.04584 * 1 2 3 21 21 H 1.09002 * 109.46851 * 56.04437 * 1 2 3 22 22 H 1.08997 * 109.46920 * 176.04846 * 1 2 3 23 23 H 1.08995 * 109.46814 * 183.94910 * 3 2 1 24 24 H 1.08996 * 109.47022 * 303.94937 * 3 2 1 25 25 H 1.09005 * 109.46862 * 63.95620 * 3 2 1 26 26 H 1.08999 * 109.45994 * 300.00016 * 4 2 1 27 27 H 1.08999 * 109.50046 * 301.32596 * 5 4 2 28 28 H 1.09006 * 109.49791 * 61.43053 * 5 4 2 29 29 H 1.09002 * 109.58412 * 185.57816 * 6 5 4 30 30 H 1.08996 * 109.58599 * 65.15765 * 6 5 4 31 31 H 0.97008 * 119.99450 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.58601 * 186.59695 * 18 7 6 33 33 H 1.09005 * 109.70290 * 66.24444 * 18 7 6 34 34 H 1.08999 * 109.49830 * 298.57809 * 19 4 2 35 35 H 1.08995 * 109.49675 * 58.64894 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.5037 -2.2125 1.0492 6 6 2.0261 -2.9998 2.2551 7 7 3.4877 -2.8618 2.3127 8 6 4.2787 -3.9517 2.3674 9 8 5.4884 -3.8285 2.3192 10 6 3.6827 -5.2834 2.4849 11 1 2.6098 -5.4001 2.4463 12 6 4.5038 -6.4062 2.6471 13 7 5.8021 -6.2649 2.6941 14 14 3.7434 -8.1059 2.7962 15 1 3.6087 -8.7082 1.4455 16 1 4.6143 -8.9659 3.6372 17 1 2.4024 -7.9947 3.4245 18 6 4.0705 -1.5132 2.3104 19 6 3.5253 -0.7425 1.1039 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3432 -0.0708 24 1 1.5900 1.9163 -0.8525 25 1 1.7045 1.8723 0.9234 26 1 1.6458 -0.3199 2.0687 27 1 0.4138 -2.2270 1.0497 28 1 1.8737 -2.6670 0.1301 29 1 1.7624 -4.0519 2.1466 30 1 1.5851 -2.6029 3.1694 31 1 6.3709 -7.0426 2.8069 32 1 5.1558 -1.5843 2.2385 33 1 3.7985 -0.9936 3.2292 34 1 3.8762 -1.2108 0.1843 35 1 3.8742 0.2894 1.1428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036192356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = -53.051661 kcal Electronic energy + Delta-G solvation = -16291.213823 eV Core-core repulsion = 13709.229691 eV Total energy + Delta-G solvation = -2581.984132 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59109 -38.76960 -36.35920 -34.65089 -32.50675 -31.94464 -28.76465 -28.13956 -26.22454 -23.82209 -23.46056 -21.60593 -20.44411 -18.49353 -17.83003 -16.74486 -16.20839 -15.92557 -15.73442 -15.60380 -15.43071 -14.62260 -14.51778 -14.05349 -13.50302 -13.36018 -13.13128 -13.02624 -12.94097 -12.71925 -12.60869 -12.31121 -12.11882 -12.06035 -11.91409 -11.47422 -11.16705 -10.92273 -9.76975 -9.24589 -9.08078 -8.28038 -6.82822 1.40639 1.42360 1.57405 2.24898 2.46645 2.83932 3.01417 3.61789 3.80795 3.86517 4.23139 4.28646 4.30055 4.40883 4.53414 4.56701 4.69446 4.74470 4.80345 4.85016 4.87945 4.94233 4.98801 5.08786 5.13166 5.20067 5.40536 5.45452 5.78864 6.13375 6.15562 6.19733 6.42416 6.88952 7.43778 8.48018 8.68623 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046048 B = 0.006889 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.919069 B = 4063.577990 C = 4514.217214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.561 5.561 3 C 0.021 3.979 4 C 0.097 3.903 5 C -0.117 4.117 6 C 0.120 3.880 7 N -0.645 5.645 8 C 0.539 3.461 9 O -0.635 6.635 10 C -0.569 4.569 11 H 0.095 0.905 12 C 0.027 3.973 13 N -0.825 5.825 14 Si 0.996 3.004 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.245 1.245 18 C 0.118 3.882 19 C -0.113 4.113 20 H 0.030 0.970 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.273 0.727 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 10.061 -2.899 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.285 5.285 3 C -0.127 4.127 4 C -0.011 4.011 5 C -0.156 4.156 6 C -0.004 4.004 7 N -0.382 5.382 8 C 0.345 3.655 9 O -0.522 6.522 10 C -0.605 4.605 11 H 0.113 0.887 12 C -0.187 4.187 13 N -0.454 5.454 14 Si 0.815 3.185 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.168 1.168 18 C -0.006 4.006 19 C -0.152 4.152 20 H 0.049 0.951 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.139 9.862 -3.340 15.993 hybrid contribution 0.065 -0.278 0.786 0.836 sum -12.074 9.584 -2.554 15.626 Atomic orbital electron populations 1.22472 0.86219 1.02843 1.01054 1.61993 1.09061 1.14413 1.43042 1.22465 1.01074 0.88070 1.01085 1.21479 0.93909 0.93980 0.91775 1.21957 1.01253 0.94280 0.98078 1.21606 0.79827 1.01491 0.97447 1.48075 1.06755 1.04859 1.78515 1.18700 0.85511 0.85364 0.75885 1.90531 1.16901 1.87015 1.57776 1.21521 0.95153 0.90344 1.53493 0.88710 1.27023 0.94703 1.05645 0.91361 1.70208 1.06238 1.32533 1.36449 0.85041 0.79263 0.74965 0.79182 1.18724 1.19881 1.16839 1.21234 0.98121 0.83615 0.97602 1.21901 0.95482 1.00271 0.97499 0.95128 0.90286 0.90927 0.91495 0.90175 0.95125 0.93550 0.88700 0.93111 0.89826 0.91980 0.91669 0.93120 0.92122 0.93590 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.21 127.69 1.18 1.58 16 2 N -0.56 -13.55 4.89 -923.09 -4.51 -18.06 16 3 C 0.02 0.41 9.11 127.69 1.16 1.58 16 4 C 0.10 2.70 1.91 44.94 0.09 2.79 16 5 C -0.12 -3.53 5.16 30.67 0.16 -3.37 16 6 C 0.12 4.39 6.31 86.36 0.55 4.93 16 7 N -0.65 -30.38 2.97 -823.99 -2.45 -32.82 16 8 C 0.54 32.28 7.62 86.36 0.66 32.94 16 9 O -0.63 -43.91 14.45 -4.32 -0.06 -43.98 16 10 C -0.57 -32.56 8.86 24.83 0.22 -32.34 16 11 H 0.10 4.81 5.69 -2.91 -0.02 4.79 16 12 C 0.03 1.55 5.50 85.30 0.47 2.02 16 13 N -0.82 -51.42 11.84 21.84 0.26 -51.16 16 14 Si 1.00 41.17 29.56 68.60 2.03 43.20 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 18 C 0.12 4.83 6.44 86.36 0.56 5.39 16 19 C -0.11 -3.69 5.04 30.67 0.15 -3.54 16 20 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 21 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 22 H 0.07 1.35 6.27 -2.39 -0.01 1.34 16 23 H 0.07 1.39 6.20 -2.39 -0.01 1.38 16 24 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 25 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 2.26 6.33 -2.39 -0.02 2.24 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 3.23 5.37 -2.39 -0.01 3.22 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.27 15.44 8.29 -92.70 -0.77 14.67 16 32 H 0.05 2.41 6.99 -2.39 -0.02 2.39 16 33 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.39 6.27 -2.39 -0.01 2.37 16 Total: -1.00 -76.06 274.85 1.52 -74.54 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.07 Total: 16.30 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.19 Total: 11.98 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -6.70 Total: -102.04 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.06 Total: -43.98 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -76.06 1.52 -74.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036192356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.489 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds