Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47199 * 2 1 4 4 H 1.08993 * 109.46899 * 186.37017 * 3 2 1 5 5 C 1.50704 * 109.46622 * 306.36796 * 3 2 1 6 6 H 1.08002 * 119.99305 * 120.00185 * 5 3 2 7 7 C 1.37870 * 120.00342 * 299.99545 * 5 3 2 8 8 N 1.31517 * 119.99949 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00112 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46747 * 90.00634 * 9 7 5 11 11 H 1.48498 * 109.47147 * 210.00169 * 9 7 5 12 12 H 1.48496 * 109.47291 * 330.00976 * 9 7 5 13 13 N 1.46901 * 109.46884 * 66.36811 * 3 2 1 14 14 C 1.48059 * 111.00090 * 57.73503 * 13 3 2 15 15 C 1.53693 * 112.47339 * 192.19724 * 14 13 3 16 16 C 1.50801 * 112.09724 * 318.55198 * 15 14 13 17 17 N 1.47913 * 108.50075 * 92.54802 * 16 15 14 18 18 C 1.46900 * 110.99764 * 153.79096 * 17 16 15 19 19 C 1.40011 * 114.06588 * 280.07571 * 17 16 15 20 20 C 1.44575 * 110.99904 * 290.04266 * 13 3 2 21 21 H 1.09000 * 109.47107 * 166.05333 * 1 2 3 22 22 H 1.09005 * 109.47065 * 286.04950 * 1 2 3 23 23 H 1.08997 * 109.47309 * 46.04757 * 1 2 3 24 24 H 1.08997 * 109.46937 * 240.00026 * 2 1 3 25 25 H 1.09004 * 109.46892 * 119.99946 * 2 1 3 26 26 H 0.96998 * 119.99864 * 179.97438 * 8 7 5 27 27 H 1.09010 * 108.88189 * 312.96685 * 14 13 3 28 28 H 1.09002 * 108.88596 * 71.42344 * 14 13 3 29 29 H 1.09003 * 108.95813 * 79.22375 * 15 14 13 30 30 H 1.08994 * 108.96028 * 197.96325 * 15 14 13 31 31 H 1.09005 * 109.63517 * 332.84400 * 16 15 14 32 32 H 1.09005 * 109.63278 * 212.25067 * 16 15 14 33 33 H 1.09007 * 109.46701 * 187.96885 * 18 17 16 34 34 H 1.09005 * 109.47251 * 307.96652 * 18 17 16 35 35 H 1.08995 * 109.47699 * 67.97316 * 18 17 16 36 36 H 1.08997 * 108.96002 * 182.47520 * 19 17 16 37 37 H 1.08996 * 108.95864 * 301.13784 * 19 17 16 38 38 H 1.09002 * 109.57454 * 100.54292 * 20 13 3 39 39 H 1.08998 * 109.68229 * 340.21968 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1240 1.4446 -0.1140 5 6 1.4131 2.1969 -1.1441 6 1 0.8076 3.0695 -0.9482 7 6 1.6125 1.7731 -2.4409 8 7 2.3494 0.7103 -2.6794 9 14 0.8348 2.7078 -3.8589 10 1 1.7668 3.7659 -4.3246 11 1 0.5536 1.7696 -4.9751 12 1 -0.4342 3.3310 -3.4044 13 7 1.6798 2.0892 1.2689 14 6 2.2344 1.3428 2.4210 15 6 1.6401 1.8045 3.7611 16 6 1.5027 3.3045 3.8340 17 7 0.1465 3.6745 3.3739 18 6 -0.2822 4.9473 3.9689 19 6 0.0026 3.6978 1.9814 20 6 0.2539 2.3139 1.3493 21 1 -0.3633 -0.9974 -0.2477 22 1 -0.3633 0.2841 0.9877 23 1 -0.3634 0.7132 -0.7398 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4894 0.4120 -3.5917 27 1 2.0233 0.2816 2.2885 28 1 3.3148 1.4850 2.4465 29 1 0.6563 1.3523 3.8868 30 1 2.2892 1.4700 4.5703 31 1 2.2480 3.7723 3.1906 32 1 1.6434 3.6356 4.8630 33 1 -1.3304 5.1258 3.7288 34 1 -0.1599 4.9020 5.0511 35 1 0.3255 5.7587 3.5683 36 1 -1.0088 4.0211 1.7353 37 1 0.7124 4.4120 1.5640 38 1 -0.2032 1.5415 1.9678 39 1 -0.1793 2.2851 0.3495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036986723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = 25.892474 kcal Electronic energy + Delta-G solvation = -17309.007127 eV Core-core repulsion = 14866.279364 eV Total energy + Delta-G solvation = -2442.727763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14721 -36.51634 -33.18741 -31.82293 -30.39467 -28.46341 -26.66669 -24.92205 -24.75549 -22.65666 -20.16857 -20.02645 -18.63250 -16.29231 -15.77733 -14.95197 -14.80274 -14.71515 -14.21816 -13.54440 -13.19364 -12.93053 -12.63748 -12.32887 -11.99588 -11.87082 -11.41495 -11.14414 -10.88937 -10.84832 -10.71517 -10.55578 -10.51331 -10.24895 -9.84710 -9.74521 -9.55097 -9.32282 -8.81485 -8.36259 -7.79463 -6.86760 -6.00378 -4.02256 3.30553 3.37541 3.39984 4.38985 4.41257 5.06786 5.31222 5.32041 5.41620 5.53537 5.70028 5.75947 5.92848 5.99977 6.03857 6.12996 6.22281 6.30255 6.40232 6.45092 6.45508 6.60426 6.65501 6.70660 6.83130 6.95830 7.05771 7.36902 7.45863 7.51416 7.66837 7.75056 7.82102 7.90342 8.23096 8.49777 8.70916 9.03872 9.60972 11.06728 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032201 B = 0.009215 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.337884 B = 3037.656861 C = 3509.883827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.218 3.782 4 H 0.036 0.964 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.545 5.545 14 C 0.053 3.947 15 C -0.117 4.117 16 C 0.073 3.927 17 N -0.556 5.556 18 C 0.032 3.968 19 C 0.069 3.931 20 C 0.064 3.936 21 H 0.018 0.982 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.019 0.981 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 3.143 10.226 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.112 3.888 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.269 5.269 14 C -0.074 4.074 15 C -0.155 4.155 16 C -0.054 4.054 17 N -0.281 5.281 18 C -0.116 4.116 19 C -0.061 4.061 20 C -0.065 4.065 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.218 3.122 10.217 11.158 hybrid contribution -0.167 0.238 -1.146 1.183 sum -3.385 3.360 9.071 10.249 Atomic orbital electron populations 1.22060 0.97953 0.99377 1.00670 1.22105 0.94983 1.01416 1.00192 1.19307 0.96225 0.88813 0.84498 0.94605 1.21089 1.30876 1.11699 0.90100 0.91863 1.24892 0.95397 0.95048 0.98639 1.69896 1.38941 1.23925 1.20124 0.86612 0.79702 0.79645 0.82159 1.20779 1.21391 1.19898 1.61015 1.12846 1.50397 1.02666 1.22405 0.98653 0.96267 0.90121 1.21428 1.01231 0.95937 0.96905 1.21702 0.88891 0.96272 0.98536 1.59346 1.25965 1.31207 1.11555 1.22297 1.00124 0.90088 0.99131 1.21164 0.99300 0.99451 0.86171 1.22285 0.89752 0.93312 1.01125 0.96257 0.94343 0.91063 0.89285 0.96257 0.93062 0.94651 0.92510 0.91504 0.92260 0.93081 0.92342 0.92032 0.92190 0.96156 0.92469 0.95422 0.94662 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.38 37.16 0.31 -2.81 16 2 C -0.15 -3.47 5.20 -26.73 -0.14 -3.61 16 3 C 0.22 5.35 2.45 -68.86 -0.17 5.18 16 4 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.50 -13.10 5.94 -34.44 -0.20 -13.31 16 6 H 0.06 1.67 6.53 -52.49 -0.34 1.33 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -24.86 11.39 55.43 0.63 -24.23 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.55 -11.56 3.98 -227.72 -0.91 -12.47 16 14 C 0.05 0.99 5.32 -2.83 -0.02 0.97 16 15 C -0.12 -1.81 5.36 -27.47 -0.15 -1.96 16 16 C 0.07 1.11 5.34 -4.37 -0.02 1.09 16 17 N -0.56 -8.80 4.32 -248.07 -1.07 -9.88 16 18 C 0.03 0.41 9.47 60.06 0.57 0.98 16 19 C 0.07 1.23 5.04 -6.75 -0.03 1.20 16 20 C 0.06 1.28 3.07 -4.44 -0.01 1.26 16 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.04 0.77 5.07 -51.93 -0.26 0.51 16 23 H 0.07 1.67 5.84 -51.93 -0.30 1.36 16 24 H 0.09 2.35 6.27 -51.93 -0.33 2.02 16 25 H 0.02 0.42 5.78 -51.93 -0.30 0.12 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.04 0.68 5.49 -51.92 -0.29 0.40 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.09 7.23 -51.93 -0.38 0.71 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.88 7.57 -51.93 -0.39 0.48 16 32 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 37 H 0.03 0.54 8.07 -51.93 -0.42 0.13 16 38 H 0.04 0.70 5.13 -51.93 -0.27 0.44 16 39 H 0.10 2.24 4.01 -51.93 -0.21 2.03 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -26.97 278.97 -8.49 -35.46 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.37 Total: 0.38 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 0.04 Total: -9.44 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -1.35 Total: -46.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.97 -8.49 -35.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036986723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.354 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds