Wall clock time and date at job start Sun Mar 29 2020 21:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 119.99486 * 2 1 4 4 O 1.21695 * 119.99680 * 179.97438 * 3 2 1 5 5 C 1.46377 * 120.00649 * 0.02562 * 3 2 1 6 6 H 1.07996 * 119.99464 * 359.97438 * 5 3 2 7 7 C 1.40043 * 120.00236 * 180.02562 * 5 3 2 8 8 N 1.30672 * 119.99820 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00118 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47577 * 89.99702 * 9 7 5 11 11 H 1.48498 * 109.47238 * 210.00328 * 9 7 5 12 12 H 1.48503 * 109.47191 * 329.99658 * 9 7 5 13 13 C 1.46489 * 120.00059 * 179.97438 * 2 1 3 14 14 H 1.09005 * 109.53968 * 180.09473 * 13 2 1 15 15 C 1.53125 * 109.50529 * 60.00281 * 13 2 1 16 16 C 1.53114 * 109.16368 * 182.40441 * 15 13 2 17 17 C 1.53037 * 109.31211 * 57.63311 * 16 15 13 18 18 N 1.46854 * 109.52285 * 300.88400 * 17 16 15 19 19 C 1.46895 * 110.99648 * 185.80147 * 18 17 16 20 20 C 1.46840 * 111.23238 * 61.67711 * 18 17 16 21 21 H 1.08995 * 109.47028 * 269.99934 * 1 2 3 22 22 H 1.09001 * 109.46932 * 29.99957 * 1 2 3 23 23 H 1.08999 * 109.46780 * 149.99903 * 1 2 3 24 24 H 0.97007 * 120.00074 * 180.02562 * 8 7 5 25 25 H 1.08998 * 109.52257 * 62.49634 * 15 13 2 26 26 H 1.09004 * 109.56800 * 302.34343 * 15 13 2 27 27 H 1.09002 * 109.50377 * 177.59436 * 16 15 13 28 28 H 1.09003 * 109.50316 * 297.67431 * 16 15 13 29 29 H 1.09000 * 109.46159 * 60.85546 * 17 16 15 30 30 H 1.09000 * 109.46461 * 180.82902 * 17 16 15 31 31 H 1.08999 * 109.47502 * 295.74346 * 19 18 17 32 32 H 1.08996 * 109.47397 * 55.74738 * 19 18 17 33 33 H 1.09003 * 109.47015 * 175.74892 * 19 18 17 34 34 H 1.09001 * 109.46294 * 178.26219 * 20 18 17 35 35 H 1.09003 * 109.45458 * 58.29272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3558 1.1673 0.0005 5 6 1.4070 2.4350 0.0006 6 1 0.3270 2.4349 0.0006 7 6 2.1072 3.6478 0.0000 8 7 3.4139 3.6478 -0.0005 9 14 1.1732 5.2655 0.0015 10 1 0.9272 5.6939 1.4018 11 1 1.9749 6.3005 -0.6993 12 1 -0.1252 5.0881 -0.6972 13 6 2.1975 -1.2686 0.0006 14 1 3.2694 -1.0707 0.0022 15 6 1.8282 -2.0728 -1.2491 16 6 2.5514 -3.4218 -1.2106 17 6 2.1692 -4.1646 0.0716 18 7 2.5426 -3.3543 1.2381 19 6 2.3166 -4.0940 2.4869 20 6 1.8247 -2.0734 1.2477 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.8989 4.4879 -0.0005 25 1 2.1316 -1.5221 -2.1395 26 1 0.7509 -2.2375 -1.2721 27 1 2.2593 -4.0162 -2.0764 28 1 3.6289 -3.2577 -1.2287 29 1 1.0936 -4.3411 0.0822 30 1 2.6942 -5.1191 0.1087 31 1 1.2511 -4.2915 2.6045 32 1 2.8596 -5.0384 2.4532 33 1 2.6713 -3.5008 3.3298 34 1 2.0995 -1.5098 2.1392 35 1 0.7506 -2.2593 1.2522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053246000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:29 Heat of formation + Delta-G solvation = -33.219973 kcal Electronic energy + Delta-G solvation = -16355.372625 eV Core-core repulsion = 13774.248459 eV Total energy + Delta-G solvation = -2581.124165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.11138 -37.04702 -34.14742 -32.49933 -32.38646 -29.66942 -26.55130 -26.07860 -25.58777 -22.62299 -22.30813 -19.68824 -18.67468 -16.43658 -15.74350 -15.56151 -14.86376 -14.60916 -14.27622 -14.02744 -13.68026 -13.20396 -12.82658 -12.39002 -12.25579 -12.08397 -11.56207 -11.53310 -11.39005 -11.18307 -11.00412 -10.82706 -10.55874 -10.27022 -10.12125 -10.10274 -9.92822 -8.83750 -8.14218 -7.54408 -7.17922 -6.16982 -4.62655 3.14742 3.21534 3.24612 3.96897 4.16331 4.57368 4.68523 5.13910 5.19243 5.23822 5.37239 5.53635 5.58316 5.69836 5.82528 5.84648 5.87717 5.92313 5.98485 6.10723 6.12199 6.27780 6.40300 6.41203 6.56582 6.78558 6.81653 7.26289 7.27179 7.46502 7.69514 8.17754 8.39799 9.04173 9.45972 10.60386 10.79282 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047497 B = 0.006691 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.367135 B = 4183.555609 C = 4193.912729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.642 5.642 3 C 0.557 3.443 4 O -0.576 6.576 5 C -0.543 4.543 6 H 0.072 0.928 7 C 0.087 3.913 8 N -0.767 5.767 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.152 3.848 14 H 0.102 0.898 15 C -0.129 4.129 16 C -0.114 4.114 17 C 0.058 3.942 18 N -0.542 5.542 19 C 0.028 3.972 20 C 0.053 3.947 21 H 0.028 0.972 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.268 0.732 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -11.710 0.575 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.380 5.380 3 C 0.363 3.637 4 O -0.458 6.458 5 C -0.580 4.580 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.396 5.396 9 Si 0.731 3.269 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.046 3.954 14 H 0.120 0.880 15 C -0.168 4.168 16 C -0.152 4.152 17 C -0.070 4.070 18 N -0.267 5.267 19 C -0.120 4.120 20 C -0.076 4.076 21 H 0.047 0.953 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.363 -11.474 0.541 12.287 hybrid contribution -1.547 0.570 0.154 1.656 sum -5.910 -10.904 0.695 12.422 Atomic orbital electron populations 1.21362 0.82643 1.00973 0.99381 1.47964 1.04936 1.05066 1.80026 1.18274 0.86996 0.82231 0.76211 1.90596 1.14029 1.86126 1.55057 1.21002 0.93668 0.89231 1.54080 0.91005 1.25739 0.94605 1.00292 0.92645 1.70028 1.07054 1.27242 1.35239 0.86395 0.80164 0.81520 0.78819 1.19759 1.20463 1.18922 1.20549 0.99578 0.83958 0.91272 0.88048 1.21963 0.99575 0.95569 0.99658 1.21549 1.01660 0.96084 0.95953 1.22086 0.97873 0.96180 0.90905 1.61823 1.58298 1.04450 1.02146 1.22318 0.98777 0.98510 0.92414 1.22481 0.94976 0.89603 1.00512 0.95329 0.91002 0.94133 0.92121 0.91569 0.92675 0.91810 0.90937 0.95381 0.91176 0.96118 0.91695 0.91394 0.90748 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 9.18 59.85 0.55 2.46 16 2 N -0.64 -14.88 2.77 -175.50 -0.49 -15.36 16 3 C 0.56 16.07 7.61 -12.99 -0.10 15.98 16 4 O -0.58 -18.89 14.35 5.19 0.07 -18.82 16 5 C -0.54 -15.37 8.74 -35.63 -0.31 -15.68 16 6 H 0.07 1.85 6.00 -52.49 -0.31 1.54 16 7 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 8 N -0.77 -23.16 11.83 55.55 0.66 -22.50 16 9 Si 0.91 20.18 29.56 -169.99 -5.02 15.16 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.15 3.10 2.69 -67.85 -0.18 2.92 16 14 H 0.10 2.46 6.90 -51.93 -0.36 2.10 16 15 C -0.13 -2.17 5.31 -26.61 -0.14 -2.31 16 16 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 17 C 0.06 0.76 5.47 -3.83 -0.02 0.74 16 18 N -0.54 -8.34 4.91 -242.97 -1.19 -9.53 16 19 C 0.03 0.35 9.59 60.06 0.58 0.93 16 20 C 0.05 0.94 4.76 -3.84 -0.02 0.92 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 1.40 6.09 -51.93 -0.32 1.09 16 23 H 0.04 0.65 6.39 -51.93 -0.33 0.32 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.86 6.58 -51.93 -0.34 0.52 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.03 0.46 7.64 -51.93 -0.40 0.07 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -33.44 278.86 -7.09 -40.53 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.42 Total: -0.22 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 0.09 Total: 6.53 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -1.02 Total: -47.40 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.07 Total: -18.82 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.44 -7.09 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053246000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.313 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds