Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47575 * 2 1 4 4 H 1.09004 * 109.47163 * 54.99737 * 3 2 1 5 5 C 1.50700 * 109.47738 * 174.99644 * 3 2 1 6 6 H 1.08003 * 119.99786 * 119.99504 * 5 3 2 7 7 C 1.37873 * 120.00149 * 300.00608 * 5 3 2 8 8 N 1.31524 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47156 * 59.99833 * 9 7 5 11 11 H 1.48502 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46667 * 299.99569 * 9 7 5 13 13 N 1.46899 * 109.47282 * 295.00340 * 3 2 1 14 14 C 1.46962 * 110.99604 * 298.79606 * 13 3 2 15 15 C 1.53051 * 109.36359 * 176.81311 * 14 13 3 16 16 N 1.46956 * 109.36687 * 58.40092 * 15 14 13 17 17 C 1.46903 * 111.00102 * 176.81178 * 16 15 14 18 18 C 1.46963 * 110.89784 * 300.68762 * 16 15 14 19 19 H 1.08992 * 109.47287 * 299.33311 * 18 16 15 20 20 C 1.53000 * 109.50774 * 179.26374 * 18 16 15 21 21 C 1.46956 * 111.00293 * 174.99794 * 13 3 2 22 22 H 1.08996 * 109.47041 * 300.00021 * 1 2 3 23 23 H 1.09005 * 109.46647 * 60.00139 * 1 2 3 24 24 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47099 * 239.99980 * 2 1 3 26 26 H 1.09002 * 109.46942 * 120.00295 * 2 1 3 27 27 H 0.96997 * 119.99855 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.48625 * 296.77747 * 14 13 3 29 29 H 1.09001 * 109.49014 * 56.84362 * 14 13 3 30 30 H 1.09002 * 109.48907 * 178.36861 * 15 14 13 31 31 H 1.09002 * 109.48601 * 298.40885 * 15 14 13 32 32 H 1.09001 * 109.46922 * 63.95074 * 17 16 15 33 33 H 1.09001 * 109.47063 * 183.95278 * 17 16 15 34 34 H 1.08994 * 109.46955 * 303.95535 * 17 16 15 35 35 H 1.08999 * 109.47116 * 300.10575 * 20 18 16 36 36 H 1.09001 * 109.46711 * 60.10316 * 20 18 16 37 37 H 1.09000 * 109.46913 * 180.10557 * 20 18 16 38 38 H 1.09002 * 109.48806 * 303.15319 * 21 13 3 39 39 H 1.09002 * 109.49141 * 63.19591 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3372 2.1734 9 14 6.0050 0.8799 1.3813 10 1 6.5005 2.2798 1.3810 11 1 6.3978 0.2166 2.6505 12 1 6.5967 0.1451 0.2344 13 7 1.6515 2.0993 -1.2552 14 6 2.2440 1.4150 -2.4130 15 6 1.7524 2.0793 -3.7012 16 7 2.1221 3.5016 -3.6878 17 6 1.7335 4.1584 -4.9430 18 6 1.5299 4.1862 -2.5300 19 1 0.4435 4.1170 -2.5836 20 6 1.9492 5.6576 -2.5371 21 6 2.0211 3.5215 -1.2418 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0606 2.9503 28 1 3.3304 1.4845 -2.3596 29 1 1.9456 0.3666 -2.4077 30 1 2.2133 1.5919 -4.5604 31 1 0.6685 1.9855 -3.7680 32 1 0.6481 4.1406 -5.0415 33 1 2.0807 5.1915 -4.9351 34 1 2.1832 3.6303 -5.7838 35 1 3.0357 5.7260 -2.4846 36 1 1.5992 6.1306 -3.4547 37 1 1.5112 6.1643 -1.6772 38 1 1.5602 4.0089 -0.3826 39 1 3.1050 3.6150 -1.1747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -12.162629 kcal Electronic energy + Delta-G solvation = -17056.238185 eV Core-core repulsion = 14611.860229 eV Total energy + Delta-G solvation = -2444.377956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46333 -37.60538 -34.47704 -33.36568 -32.90285 -29.75338 -28.12171 -27.19784 -25.14562 -23.90727 -23.28287 -20.86252 -20.53478 -18.27351 -17.23695 -16.50063 -16.26035 -16.05529 -15.41036 -15.26829 -14.98596 -14.50762 -13.98112 -13.62128 -13.41865 -13.22072 -13.04223 -12.88201 -12.79101 -12.72285 -12.55548 -12.34376 -12.02325 -11.89830 -11.83016 -11.59510 -11.46433 -11.07508 -10.86928 -10.41900 -9.21821 -8.91505 -8.02413 -6.24665 1.37503 1.37948 1.45688 2.40310 3.04334 3.15176 3.41028 4.01570 4.18027 4.18517 4.41757 4.49773 4.56043 4.62784 4.71247 4.73397 4.75565 4.81507 4.87750 4.92592 4.93179 5.05287 5.12633 5.17887 5.24988 5.27804 5.41420 5.41538 5.49403 5.63515 5.79201 6.03447 6.17625 6.19539 6.27734 6.42562 6.66633 6.95933 7.45617 8.92184 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.009306 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.134824 B = 3008.186810 C = 3501.547438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.533 5.533 14 C 0.065 3.935 15 C 0.068 3.932 16 N -0.555 5.555 17 C 0.025 3.975 18 C 0.090 3.910 19 H 0.041 0.959 20 C -0.137 4.137 21 C 0.073 3.927 22 H 0.032 0.968 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 5.844 -11.083 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.257 5.257 14 C -0.064 4.064 15 C -0.061 4.061 16 N -0.281 5.281 17 C -0.122 4.122 18 C -0.019 4.019 19 H 0.059 0.941 20 C -0.195 4.195 21 C -0.056 4.056 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.253 5.748 -10.902 13.038 hybrid contribution 1.192 -0.250 0.689 1.399 sum -3.062 5.498 -10.213 11.997 Atomic orbital electron populations 1.21558 0.96248 0.99844 1.00558 1.21466 0.94524 0.98085 1.00470 1.19028 0.91768 0.91562 0.86322 0.98011 1.21903 0.94105 1.37574 1.05151 0.93645 1.25586 1.01693 0.94969 0.95543 1.69990 1.36244 1.38994 1.09755 0.85825 0.81618 0.78128 0.77340 1.20239 1.20687 1.20019 1.62594 1.57555 1.01974 1.03546 1.21970 0.96507 0.97781 0.90109 1.22127 0.98341 0.88333 0.97260 1.62132 1.60006 1.02618 1.03354 1.22443 0.98572 1.00439 0.90752 1.21642 0.96123 0.94522 0.89575 0.94128 1.21812 1.01733 0.93170 1.02781 1.21944 0.97624 0.89507 0.96573 0.94894 0.92655 0.93403 0.94777 0.91884 0.92912 0.96479 0.91226 0.89367 0.94434 0.95402 0.90130 0.90691 0.92855 0.90471 0.91494 0.92457 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.33 16 2 C -0.11 -5.15 5.07 30.59 0.15 -5.00 16 3 C 0.22 11.22 1.75 44.17 0.08 11.30 16 4 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 5 C -0.55 -30.32 7.13 25.60 0.18 -30.13 16 6 H 0.05 2.58 5.80 -2.91 -0.02 2.56 16 7 C 0.02 1.22 5.29 84.65 0.45 1.67 16 8 N -0.91 -52.49 11.30 21.45 0.24 -52.25 16 9 Si 0.94 44.43 29.54 68.60 2.03 46.46 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.53 -23.07 4.15 -874.85 -3.63 -26.71 16 14 C 0.06 2.59 4.96 86.31 0.43 3.02 16 15 C 0.07 2.12 5.62 86.31 0.49 2.61 16 16 N -0.56 -16.86 4.78 -896.52 -4.29 -21.14 16 17 C 0.03 0.56 9.13 127.69 1.17 1.73 16 18 C 0.09 2.84 2.56 44.92 0.12 2.95 16 19 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.14 -3.46 8.86 71.98 0.64 -2.82 16 21 C 0.07 2.93 4.60 86.31 0.40 3.33 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 2.12 7.75 -2.38 -0.02 2.10 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.03 1.60 6.12 -2.38 -0.01 1.58 16 26 H 0.06 3.43 5.95 -2.39 -0.01 3.41 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.02 0.78 6.51 -2.39 -0.02 0.76 16 29 H 0.07 2.78 6.07 -2.39 -0.01 2.77 16 30 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.57 6.26 -2.39 -0.01 1.56 16 34 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.56 6.37 -2.39 -0.02 1.55 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 39 H 0.02 0.78 6.88 -2.39 -0.02 0.77 16 Total: -1.00 -59.93 291.36 0.14 -59.79 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.00 Total: 9.54 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.80 Total: -15.68 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -7.68 Total: -100.10 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.93 0.14 -59.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.626 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds