Wall clock time and date at job start Sun Mar 29 2020 22:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00184 * 2 1 4 4 C 1.46903 * 111.00122 * 123.95249 * 2 1 3 5 5 H 1.09000 * 109.53307 * 300.09878 * 4 2 1 6 6 C 1.53123 * 109.50029 * 60.19435 * 4 2 1 7 7 C 1.53123 * 109.16001 * 177.59556 * 6 4 2 8 8 C 1.53032 * 109.27911 * 302.34817 * 7 6 4 9 9 N 1.46848 * 109.52348 * 59.17573 * 8 7 6 10 10 C 1.46907 * 110.99958 * 174.16258 * 9 8 7 11 11 C 1.53006 * 109.46853 * 294.21243 * 10 9 8 12 12 C 1.50694 * 109.46759 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00644 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99639 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99833 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47326 * 90.00120 * 16 14 12 18 18 H 1.48509 * 109.46954 * 210.00108 * 16 14 12 19 19 H 1.48507 * 109.47365 * 329.99585 * 16 14 12 20 20 C 1.46842 * 111.20069 * 298.25721 * 9 8 7 21 21 H 1.09000 * 109.46793 * 296.05227 * 1 2 3 22 22 H 1.08996 * 109.46740 * 56.04502 * 1 2 3 23 23 H 1.08995 * 109.47534 * 176.04681 * 1 2 3 24 24 H 1.09005 * 109.46866 * 183.95635 * 3 2 1 25 25 H 1.09006 * 109.46768 * 303.95186 * 3 2 1 26 26 H 1.08996 * 109.47262 * 63.95317 * 3 2 1 27 27 H 1.09000 * 109.52561 * 297.50208 * 6 4 2 28 28 H 1.09007 * 109.52268 * 57.69367 * 6 4 2 29 29 H 1.08996 * 109.50416 * 182.40514 * 7 6 4 30 30 H 1.08997 * 109.49749 * 62.28489 * 7 6 4 31 31 H 1.09003 * 109.46473 * 299.16126 * 8 7 6 32 32 H 1.08995 * 109.46713 * 179.19608 * 8 7 6 33 33 H 1.08998 * 109.47181 * 54.20697 * 10 9 8 34 34 H 1.08994 * 109.47065 * 174.21410 * 10 9 8 35 35 H 1.08998 * 109.46781 * 299.99698 * 11 10 9 36 36 H 1.08997 * 109.46936 * 59.99735 * 11 10 9 37 37 H 0.97007 * 119.99583 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46766 * 301.72784 * 20 9 8 39 39 H 1.09000 * 109.46420 * 181.75518 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6451 -0.3219 2.0694 6 6 1.5089 -2.2150 1.0472 7 6 2.1104 -3.0201 2.2025 8 6 3.6369 -2.9325 2.1385 9 7 4.0520 -1.5268 2.2294 10 6 5.5144 -1.4140 2.3104 11 6 6.0014 -2.0289 3.6242 12 6 7.5015 -1.9126 3.7075 13 1 8.0525 -1.4463 2.9042 14 6 8.1706 -2.4005 4.8100 15 7 9.4798 -2.2994 4.8825 16 14 7.2175 -3.2063 6.1998 17 1 7.0970 -4.6631 5.9379 18 1 7.9356 -2.9917 7.4820 19 1 5.8624 -2.6047 6.2848 20 6 3.5253 -0.7437 1.1044 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0251 -0.0708 24 1 3.0829 1.3431 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 1.7045 1.8724 0.9232 27 1 0.4212 -2.2389 1.1141 28 1 1.8260 -2.6472 0.0981 29 1 1.8019 -4.0622 2.1192 30 1 1.7619 -2.6115 3.1509 31 1 3.9857 -3.3538 1.1956 32 1 4.0680 -3.4929 2.9680 33 1 5.9667 -1.9434 1.4719 34 1 5.8003 -0.3629 2.2734 35 1 5.5491 -1.4995 4.4627 36 1 5.7154 -3.0800 3.6613 37 1 9.9505 -2.6430 5.6580 38 1 3.8745 -1.1753 0.1664 39 1 3.8753 0.2856 1.1830 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082681515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:13 Heat of formation + Delta-G solvation = 1.771207 kcal Electronic energy + Delta-G solvation = -16297.330266 eV Core-core repulsion = 13853.556527 eV Total energy + Delta-G solvation = -2443.773739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38671 -36.64275 -33.71136 -32.36660 -30.31686 -29.25866 -27.82245 -25.07489 -24.28921 -22.46405 -21.57834 -19.75495 -19.49462 -16.95216 -15.99840 -15.31026 -14.92000 -14.64049 -14.50887 -14.12939 -13.74552 -13.47220 -13.05050 -12.80103 -12.62062 -12.42617 -12.26568 -11.77414 -11.42990 -11.37442 -11.29516 -10.95944 -10.71790 -10.49707 -10.17571 -9.85672 -9.82994 -9.61404 -9.17611 -8.50776 -8.42407 -7.80199 -6.02634 -4.00494 3.33131 3.40637 3.46882 3.75088 4.47933 4.48659 4.77635 4.97694 5.04295 5.20369 5.26277 5.32183 5.33804 5.43695 5.50581 5.56961 5.63280 5.73894 5.83596 5.86796 5.92730 5.95248 6.03636 6.13998 6.18592 6.32090 6.39996 6.48619 6.78655 6.93382 6.97919 7.19218 7.35747 7.64760 7.68164 7.87707 8.55252 9.01746 9.60043 11.10817 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044813 B = 0.005821 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.671845 B = 4809.195199 C = 5185.203909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.020 3.980 4 C 0.087 3.913 5 H 0.049 0.951 6 C -0.111 4.111 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.542 5.542 10 C 0.073 3.927 11 C -0.007 4.007 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.062 3.938 21 H 0.023 0.977 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.036 0.964 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 2.484 -8.237 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.128 4.128 4 C -0.021 4.021 5 H 0.067 0.933 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.077 4.077 9 N -0.268 5.268 10 C -0.054 4.054 11 C -0.045 4.045 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.066 4.066 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.070 2.420 -8.129 19.961 hybrid contribution -0.244 -0.322 0.752 0.854 sum -18.313 2.098 -7.377 19.854 Atomic orbital electron populations 1.22396 0.87651 1.02219 1.00189 1.61996 1.07624 1.13775 1.43567 1.22439 1.01387 0.88702 1.00246 1.21670 0.95140 0.94021 0.91265 0.93328 1.21653 0.99620 0.94371 0.99265 1.21589 0.95593 0.99462 0.98769 1.22129 0.94787 0.89903 1.00832 1.61969 1.13140 1.09876 1.41766 1.22099 0.83153 1.00812 0.99303 1.19577 0.96520 0.95359 0.93006 1.21094 0.90042 1.39130 1.05680 0.91141 1.24991 0.94706 0.95522 0.98122 1.69917 1.07177 1.47082 1.30171 0.86776 0.80806 0.80009 0.81747 1.20356 1.21434 1.18737 1.22065 0.93145 0.98640 0.92766 0.95794 0.91647 0.91163 0.90810 0.91652 0.95564 0.92208 0.91501 0.91578 0.91328 0.95225 0.89922 0.95545 0.91555 0.95760 0.97035 0.92753 0.94529 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.22 60.06 0.55 0.78 16 2 N -0.55 -6.41 4.89 -243.07 -1.19 -7.60 16 3 C 0.02 0.22 9.11 60.07 0.55 0.76 16 4 C 0.09 1.15 2.11 -67.63 -0.14 1.01 16 5 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.11 -1.35 4.98 -26.60 -0.13 -1.48 16 7 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 8 C 0.05 0.83 5.29 -3.84 -0.02 0.81 16 9 N -0.54 -9.65 4.66 -234.67 -1.09 -10.75 16 10 C 0.07 1.52 4.90 -3.82 -0.02 1.50 16 11 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 12 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 16 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 20 C 0.06 0.95 4.35 -3.84 -0.02 0.93 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 23 H 0.07 0.63 6.37 -51.93 -0.33 0.30 16 24 H 0.07 0.81 6.26 -51.93 -0.32 0.49 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.45 6.21 -51.93 -0.32 1.13 16 33 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 34 H 0.07 1.38 7.99 -51.93 -0.41 0.96 16 35 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.01 0.28 5.86 -51.93 -0.30 -0.03 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.08 6.27 -51.93 -0.33 0.75 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -30.61 295.36 -8.63 -39.24 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.97 Total: -4.18 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -1.51 Total: -45.75 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.61 -8.63 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.008 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds