Wall clock time and date at job start Sun Mar 29 2020 22:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 H 1.09003 * 109.47221 * 304.27805 * 3 2 1 5 5 C 1.50702 * 109.47053 * 184.27950 * 3 2 1 6 6 H 1.08002 * 119.99778 * 240.00095 * 5 3 2 7 7 C 1.37873 * 120.00288 * 59.99951 * 5 3 2 8 8 N 1.31513 * 119.99972 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00243 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47409 * 89.99925 * 9 7 5 11 11 H 1.48497 * 109.47194 * 210.00221 * 9 7 5 12 12 H 1.48506 * 109.46955 * 329.99989 * 9 7 5 13 13 N 1.46898 * 109.47206 * 64.27955 * 3 2 1 14 14 C 1.46902 * 110.99909 * 205.85026 * 13 3 2 15 15 C 1.53001 * 109.46957 * 174.81650 * 14 13 3 16 16 H 1.09007 * 109.53791 * 55.09845 * 15 14 13 17 17 C 1.53123 * 109.50148 * 175.19403 * 15 14 13 18 18 C 1.53118 * 109.15714 * 177.59337 * 17 15 14 19 19 C 1.53035 * 109.28217 * 302.34557 * 18 17 15 20 20 N 1.46825 * 109.51346 * 59.18008 * 19 18 17 21 21 C 1.46847 * 111.21345 * 298.25079 * 20 19 18 22 22 H 1.08999 * 109.47251 * 294.87761 * 1 2 3 23 23 H 1.09000 * 109.47436 * 54.88214 * 1 2 3 24 24 H 1.09005 * 109.47089 * 174.88086 * 1 2 3 25 25 H 1.09005 * 109.47134 * 239.99833 * 2 1 3 26 26 H 1.08997 * 109.47266 * 120.00350 * 2 1 3 27 27 H 0.96999 * 120.00553 * 180.02562 * 8 7 5 28 28 H 1.00895 * 110.99937 * 81.89395 * 13 3 2 29 29 H 1.08996 * 109.47224 * 54.81418 * 14 13 3 30 30 H 1.09001 * 109.47076 * 294.81572 * 14 13 3 31 31 H 1.08995 * 109.52293 * 297.49959 * 17 15 14 32 32 H 1.08993 * 109.51925 * 57.62803 * 17 15 14 33 33 H 1.09007 * 109.50120 * 62.29297 * 18 17 15 34 34 H 1.09002 * 109.50075 * 182.36145 * 18 17 15 35 35 H 1.08997 * 109.46239 * 179.19582 * 19 18 17 36 36 H 1.08993 * 109.46324 * 299.16787 * 19 18 17 37 37 H 1.00904 * 110.98290 * 174.15389 * 20 19 18 38 38 H 1.09003 * 109.45878 * 301.74224 * 21 20 19 39 39 H 1.09000 * 109.46541 * 181.76225 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6153 1.9780 -0.8492 5 6 3.5432 1.4438 -0.1060 6 1 4.1393 1.8916 0.6754 7 6 4.1577 0.8733 -1.2005 8 7 3.4319 0.3275 -2.1518 9 14 6.0210 0.8743 -1.3316 10 1 6.5625 -0.3551 -0.6986 11 1 6.4166 0.9097 -2.7624 12 1 6.5654 2.0692 -0.6378 13 7 1.6365 2.1045 1.2477 14 6 1.5402 3.5589 1.0647 15 6 0.9951 4.1988 2.3431 16 1 1.6178 3.9095 3.1897 17 6 1.0069 5.7230 2.1970 18 6 0.4044 6.3531 3.4558 19 6 -1.0143 5.8169 3.6599 20 7 -0.9715 4.3555 3.7949 21 6 -0.4407 3.7249 2.5795 22 1 -0.3634 0.4323 0.9323 23 1 -0.3634 0.5912 -0.8406 24 1 -0.3633 -1.0236 -0.0917 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8641 -0.0742 -2.9217 28 1 2.2694 1.8758 1.9994 29 1 0.8687 3.7769 0.2343 30 1 2.5287 3.9641 0.8486 31 1 2.0329 6.0689 2.0718 32 1 0.4168 6.0100 1.3267 33 1 1.0179 6.0978 4.3199 34 1 0.3715 7.4365 3.3404 35 1 -1.4408 6.2528 4.5633 36 1 -1.6307 6.0845 2.8018 37 1 -1.8822 3.9871 4.0252 38 1 -1.0598 4.0025 1.7264 39 1 -0.4507 2.6415 2.6983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087647131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:31 Heat of formation + Delta-G solvation = -25.511465 kcal Electronic energy + Delta-G solvation = -16321.161011 eV Core-core repulsion = 13876.204206 eV Total energy + Delta-G solvation = -2444.956805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.60613 -36.02270 -33.20521 -31.80949 -31.28323 -29.79275 -26.44671 -24.24799 -23.48475 -22.53335 -20.88420 -19.73057 -19.06947 -16.67355 -16.22887 -14.83854 -14.61946 -14.31323 -14.19898 -13.65549 -13.52256 -13.01771 -12.82857 -12.52176 -12.09634 -11.88452 -11.52690 -11.22289 -11.12995 -10.94978 -10.82731 -10.62747 -10.32062 -10.25710 -10.14013 -9.98869 -9.56845 -9.33497 -9.01364 -8.36445 -8.31235 -7.18945 -5.97759 -4.10739 3.27657 3.34758 3.37436 4.35990 4.40716 4.91803 5.04950 5.10101 5.26937 5.37063 5.49184 5.62951 5.73943 5.80341 5.92594 6.06152 6.09334 6.17783 6.27474 6.33165 6.43251 6.51889 6.56706 6.68786 6.74591 6.78164 7.16830 7.19116 7.21105 7.47244 7.51286 7.62583 7.79867 8.12257 8.19104 8.37145 8.70849 9.03005 9.56875 11.02141 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.006563 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.370602 B = 4265.526745 C = 4908.809454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.688 5.688 14 C 0.072 3.928 15 C -0.079 4.079 16 H 0.071 0.929 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.058 3.942 20 N -0.694 5.694 21 C 0.073 3.927 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.023 0.977 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.337 0.663 38 H 0.023 0.977 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 8.134 8.195 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.317 5.317 14 C -0.058 4.058 15 C -0.099 4.099 16 H 0.090 0.910 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.325 5.325 21 C -0.056 4.056 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.154 0.846 38 H 0.041 0.959 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.254 7.933 8.210 13.526 hybrid contribution 1.306 0.343 -0.904 1.625 sum -5.948 8.276 7.306 12.540 Atomic orbital electron populations 1.21680 0.99073 0.98185 1.00273 1.21491 0.92011 0.99317 1.01623 1.19136 0.92612 0.91129 0.86437 0.95218 1.21884 0.92814 1.37856 1.05747 0.92908 1.24933 0.97916 0.95046 0.95663 1.69878 1.34840 1.38123 1.09588 0.86663 0.86172 0.78385 0.77168 1.20631 1.21231 1.20118 1.60876 1.55122 1.06031 1.09634 1.21770 0.98560 0.90205 0.95304 1.21185 0.96316 0.93531 0.98829 0.91013 1.21618 1.00756 0.95950 0.97248 1.21561 0.96134 0.98806 0.98825 1.21882 0.96835 0.88937 0.99512 1.60312 1.30102 1.04481 1.37581 1.21893 0.94735 0.99930 0.89018 0.93509 0.94575 0.95749 0.89285 0.95100 0.92925 0.85721 0.92496 0.95403 0.92001 0.92499 0.91387 0.92167 0.91510 0.95700 0.84553 0.95900 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.73 37.15 0.36 -2.42 16 2 C -0.11 -2.54 5.45 -26.74 -0.15 -2.69 16 3 C 0.21 5.30 1.98 -68.87 -0.14 5.17 16 4 H 0.03 0.82 7.70 -51.93 -0.40 0.42 16 5 C -0.54 -14.70 8.47 -34.44 -0.29 -14.99 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.15 11.29 55.43 0.63 -24.52 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.69 -14.21 5.21 -107.95 -0.56 -14.78 16 14 C 0.07 1.35 4.90 -3.82 -0.02 1.33 16 15 C -0.08 -1.22 2.54 -90.54 -0.23 -1.45 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.12 -1.58 5.29 -26.61 -0.14 -1.72 16 18 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 19 C 0.06 0.66 6.55 -3.85 -0.03 0.63 16 20 N -0.69 -8.80 6.84 -113.84 -0.78 -9.58 16 21 C 0.07 1.07 5.71 -3.84 -0.02 1.05 16 22 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.33 6.80 8.45 -39.29 -0.33 6.46 16 29 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 30 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.34 3.67 8.90 -39.29 -0.35 3.32 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 1.42 7.78 -51.93 -0.40 1.02 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -27.36 304.52 -9.28 -36.64 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.23 Total: 6.29 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.91 Total: -14.86 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.72 Total: -48.87 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.36 -9.28 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.128 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds