Wall clock time and date at job start Sun Mar 29 2020 22:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46454 * 2 1 4 4 N 1.46508 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99791 * 265.78546 * 4 3 2 6 6 H 1.08000 * 119.99502 * 146.21503 * 5 4 3 7 7 C 1.38812 * 120.00190 * 326.22053 * 5 4 3 8 8 N 1.31615 * 119.99735 * 337.68006 * 7 5 4 9 9 Si 1.86801 * 120.00094 * 157.68147 * 7 5 4 10 10 H 1.48503 * 109.46831 * 89.99510 * 9 7 5 11 11 H 1.48495 * 109.46991 * 209.99584 * 9 7 5 12 12 H 1.48502 * 109.47081 * 329.99990 * 9 7 5 13 13 C 1.46492 * 120.00104 * 85.78353 * 4 3 2 14 14 C 1.53004 * 109.47118 * 90.00051 * 13 4 3 15 15 N 1.46898 * 109.47388 * 179.97438 * 14 13 4 16 16 C 1.48533 * 110.99800 * 52.60877 * 15 14 13 17 17 C 1.54937 * 103.22620 * 159.72050 * 16 15 14 18 18 C 1.54590 * 102.92166 * 322.58013 * 17 16 15 19 19 C 1.47900 * 110.99932 * 169.99848 * 15 14 13 20 20 H 1.08999 * 109.47129 * 299.99740 * 1 2 3 21 21 H 1.08995 * 109.47406 * 60.00230 * 1 2 3 22 22 H 1.09007 * 109.46863 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47129 * 240.00260 * 2 1 3 24 24 H 1.08995 * 109.47406 * 119.99770 * 2 1 3 25 25 H 1.08999 * 109.47240 * 60.00328 * 3 2 1 26 26 H 1.09000 * 109.47516 * 299.99675 * 3 2 1 27 27 H 0.97000 * 119.99787 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47114 * 330.00507 * 13 4 3 29 29 H 1.08997 * 109.47467 * 210.00195 * 13 4 3 30 30 H 1.08997 * 109.47068 * 300.00387 * 14 13 4 31 31 H 1.09002 * 109.46756 * 60.00236 * 14 13 4 32 32 H 1.09004 * 110.66557 * 278.15327 * 16 15 14 33 33 H 1.08999 * 110.66872 * 41.28328 * 16 15 14 34 34 H 1.09010 * 110.72098 * 204.22641 * 17 16 15 35 35 H 1.08999 * 110.72511 * 80.94324 * 17 16 15 36 36 H 1.08999 * 110.31410 * 263.04067 * 18 17 16 37 37 H 1.09007 * 110.30619 * 140.87178 * 18 17 16 38 38 H 1.09002 * 109.92313 * 333.51689 * 19 15 14 39 39 H 1.09005 * 109.91502 * 94.60593 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1901 1.5297 1.1818 6 1 5.1334 1.0168 1.2983 7 6 3.6722 2.2770 2.2307 8 7 2.7986 3.2316 1.9901 9 14 4.2150 1.9277 3.9837 10 1 5.4040 2.7562 4.3080 11 1 3.1105 2.2593 4.9192 12 1 4.5621 0.4900 4.1172 13 6 4.2369 1.3496 -1.2662 14 6 4.4916 2.7559 -1.8126 15 7 5.2261 2.6627 -3.0813 16 6 4.5383 1.7484 -4.0286 17 6 5.1084 2.1709 -5.4060 18 6 5.2300 3.7063 -5.2736 19 6 5.2831 3.9763 -3.7585 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.4370 3.7540 2.7231 28 1 3.6475 0.7815 -1.9858 29 1 5.1894 0.8468 -1.0989 30 1 3.5391 3.2587 -1.9798 31 1 5.0810 3.3241 -1.0929 32 1 4.7882 0.7100 -3.8109 33 1 3.4595 1.9007 -3.9956 34 1 4.4177 1.9063 -6.2068 35 1 6.0862 1.7194 -5.5737 36 1 4.3608 4.1942 -5.7147 37 1 6.1447 4.0559 -5.7525 38 1 4.4300 4.5855 -3.4598 39 1 6.2115 4.4866 -3.5015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:08 Heat of formation + Delta-G solvation = 11.187882 kcal Electronic energy + Delta-G solvation = -16372.023287 eV Core-core repulsion = 13928.657886 eV Total energy + Delta-G solvation = -2443.365402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.58865 -36.08915 -32.78753 -32.18435 -30.49880 -28.68959 -26.82380 -25.50941 -23.22830 -21.65411 -20.57538 -20.40715 -19.27178 -16.68636 -15.72249 -15.49762 -14.75510 -14.19325 -14.03952 -13.60313 -13.26473 -13.06673 -12.73776 -12.41885 -12.13997 -11.52253 -11.36991 -11.22467 -11.19135 -10.91897 -10.75191 -10.74817 -10.63770 -10.44000 -10.23426 -10.18806 -9.78390 -9.75262 -9.44371 -8.43646 -7.93336 -6.57400 -5.74778 -3.27556 3.38741 3.46139 3.49972 4.39349 4.57023 4.88910 4.91252 5.13529 5.35269 5.51710 5.60467 5.69600 5.86544 5.89268 5.93032 5.94879 5.98007 6.01774 6.12983 6.22941 6.24970 6.29366 6.39069 6.49332 6.55483 6.63426 6.85494 6.91259 6.93803 7.09139 7.31613 7.39541 7.60522 7.80450 7.87617 8.55223 9.23739 9.87609 10.43658 11.25943 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.007475 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.887541 B = 3744.722321 C = 4449.123681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.145 3.855 4 N -0.585 5.585 5 C -0.254 4.254 6 H 0.062 0.938 7 C 0.007 3.993 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.152 3.848 14 C 0.032 3.968 15 N -0.519 5.519 16 C 0.035 3.965 17 C -0.124 4.124 18 C -0.130 4.130 19 C 0.034 3.966 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.015 0.985 27 H 0.253 0.747 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -1.685 -11.011 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.019 3.981 4 N -0.305 5.305 5 C -0.383 4.383 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.204 1.204 13 C 0.024 3.976 14 C -0.098 4.098 15 N -0.244 5.244 16 C -0.093 4.093 17 C -0.162 4.162 18 C -0.168 4.168 19 C -0.094 4.094 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.799 -1.753 -10.736 10.907 hybrid contribution -0.652 0.361 0.790 1.086 sum 0.148 -1.392 -9.946 10.044 Atomic orbital electron populations 1.21694 0.97576 0.99885 1.01065 1.22099 0.93637 1.01774 1.00536 1.21001 0.83413 0.92113 1.01617 1.43921 1.01035 1.84581 1.00938 1.19099 1.05625 1.24043 0.89574 0.92000 1.25074 0.99867 0.95178 0.99110 1.69988 1.33304 1.19361 1.30685 0.86407 0.77753 0.78295 0.85018 1.21344 1.21571 1.20385 1.20922 0.95849 0.92611 0.88168 1.23094 0.95368 1.01943 0.89420 1.64866 1.48804 1.06942 1.03753 1.23186 0.96422 0.98329 0.91334 1.22493 1.01255 0.95446 0.97040 1.22387 1.01538 0.96566 0.96318 1.22849 1.01149 0.92467 0.92939 0.93070 0.93726 0.94173 0.94262 0.92495 0.88251 0.96642 0.93676 0.94874 0.93289 0.95630 0.90480 0.90182 0.94108 0.91635 0.91031 0.91995 0.91473 0.94105 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.88 6.26 -26.73 -0.17 -3.04 16 3 C 0.14 3.45 5.25 -4.04 -0.02 3.43 16 4 N -0.58 -14.71 2.45 -173.24 -0.43 -15.14 16 5 C -0.25 -6.98 9.49 -15.06 -0.14 -7.12 16 6 H 0.06 1.71 7.92 -52.49 -0.42 1.29 16 7 C 0.01 0.20 4.93 -17.43 -0.09 0.11 16 8 N -0.89 -25.62 11.32 55.49 0.63 -24.99 16 9 Si 0.90 21.72 29.61 -169.99 -5.03 16.69 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.15 3.30 5.34 -4.04 -0.02 3.28 16 14 C 0.03 0.66 5.35 -3.82 -0.02 0.64 16 15 N -0.52 -9.03 5.40 -230.45 -1.24 -10.28 16 16 C 0.04 0.53 5.10 -1.90 -0.01 0.52 16 17 C -0.12 -1.50 7.06 -24.87 -0.18 -1.67 16 18 C -0.13 -1.57 6.93 -25.38 -0.18 -1.74 16 19 C 0.03 0.52 6.69 -2.76 -0.02 0.50 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.10 2.68 5.32 -51.93 -0.28 2.41 16 26 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.67 6.73 -51.93 -0.35 0.32 16 29 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 31 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.08 1.18 7.67 -51.93 -0.40 0.78 16 33 H 0.04 0.63 8.00 -51.93 -0.42 0.22 16 34 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.65 7.57 -51.93 -0.39 0.25 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -28.47 307.45 -9.19 -37.65 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.28 Total: -1.37 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.47 Total: -7.21 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.04 Total: -50.40 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.47 -9.19 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.841 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds