Wall clock time and date at job start Sun Mar 29 2020 22:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46454 * 2 1 4 4 N 1.46508 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99791 * 265.78546 * 4 3 2 6 6 H 1.08000 * 119.99502 * 146.21503 * 5 4 3 7 7 C 1.38812 * 120.00190 * 326.22053 * 5 4 3 8 8 N 1.31615 * 119.99735 * 337.68006 * 7 5 4 9 9 Si 1.86801 * 120.00094 * 157.68147 * 7 5 4 10 10 H 1.48503 * 109.46831 * 89.99510 * 9 7 5 11 11 H 1.48495 * 109.46991 * 209.99584 * 9 7 5 12 12 H 1.48502 * 109.47081 * 329.99990 * 9 7 5 13 13 C 1.46492 * 120.00104 * 85.78353 * 4 3 2 14 14 C 1.53004 * 109.47118 * 90.00051 * 13 4 3 15 15 N 1.46898 * 109.47388 * 179.97438 * 14 13 4 16 16 C 1.48533 * 110.99800 * 52.60877 * 15 14 13 17 17 C 1.54937 * 103.22620 * 159.72050 * 16 15 14 18 18 C 1.54590 * 102.92166 * 322.58013 * 17 16 15 19 19 C 1.47900 * 110.99932 * 169.99848 * 15 14 13 20 20 H 1.08999 * 109.47129 * 299.99740 * 1 2 3 21 21 H 1.08995 * 109.47406 * 60.00230 * 1 2 3 22 22 H 1.09007 * 109.46863 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47129 * 240.00260 * 2 1 3 24 24 H 1.08995 * 109.47406 * 119.99770 * 2 1 3 25 25 H 1.08999 * 109.47240 * 60.00328 * 3 2 1 26 26 H 1.09000 * 109.47516 * 299.99675 * 3 2 1 27 27 H 0.97000 * 119.99787 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47114 * 330.00507 * 13 4 3 29 29 H 1.08997 * 109.47467 * 210.00195 * 13 4 3 30 30 H 1.08997 * 109.47068 * 300.00387 * 14 13 4 31 31 H 1.09002 * 109.46756 * 60.00236 * 14 13 4 32 32 H 1.09004 * 110.66557 * 278.15327 * 16 15 14 33 33 H 1.08999 * 110.66872 * 41.28328 * 16 15 14 34 34 H 1.09010 * 110.72098 * 204.22641 * 17 16 15 35 35 H 1.08999 * 110.72511 * 80.94324 * 17 16 15 36 36 H 1.08999 * 110.31410 * 263.04067 * 18 17 16 37 37 H 1.09007 * 110.30619 * 140.87178 * 18 17 16 38 38 H 1.09002 * 109.92313 * 333.51689 * 19 15 14 39 39 H 1.09005 * 109.91502 * 94.60593 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1901 1.5297 1.1818 6 1 5.1334 1.0168 1.2983 7 6 3.6722 2.2770 2.2307 8 7 2.7986 3.2316 1.9901 9 14 4.2150 1.9277 3.9837 10 1 5.4040 2.7562 4.3080 11 1 3.1105 2.2593 4.9192 12 1 4.5621 0.4900 4.1172 13 6 4.2369 1.3496 -1.2662 14 6 4.4916 2.7559 -1.8126 15 7 5.2261 2.6627 -3.0813 16 6 4.5383 1.7484 -4.0286 17 6 5.1084 2.1709 -5.4060 18 6 5.2300 3.7063 -5.2736 19 6 5.2831 3.9763 -3.7585 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.4370 3.7540 2.7231 28 1 3.6475 0.7815 -1.9858 29 1 5.1894 0.8468 -1.0989 30 1 3.5391 3.2587 -1.9798 31 1 5.0810 3.3241 -1.0929 32 1 4.7882 0.7100 -3.8109 33 1 3.4595 1.9007 -3.9956 34 1 4.4177 1.9063 -6.2068 35 1 6.0862 1.7194 -5.5737 36 1 4.3608 4.1942 -5.7147 37 1 6.1447 4.0559 -5.7525 38 1 4.4300 4.5855 -3.4598 39 1 6.2115 4.4866 -3.5015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230073966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:08 Heat of formation + Delta-G solvation = -5.611456 kcal Electronic energy + Delta-G solvation = -16372.751761 eV Core-core repulsion = 13928.657886 eV Total energy + Delta-G solvation = -2444.093876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91366 -37.91954 -34.31917 -34.05742 -32.17318 -29.88143 -28.43055 -27.40583 -24.92658 -23.24144 -22.02271 -21.66349 -20.94032 -18.69275 -17.12776 -16.84394 -16.58514 -15.93501 -15.75199 -15.05896 -14.82836 -14.62943 -14.33405 -13.84356 -13.56151 -13.21216 -13.04070 -12.79073 -12.68197 -12.45665 -12.31439 -12.21524 -12.05585 -12.02005 -11.86021 -11.68637 -11.57561 -11.38414 -11.27781 -10.51656 -9.36326 -8.62337 -7.83917 -5.41144 1.44816 1.47072 1.57059 2.50347 3.05591 3.23905 3.71625 3.83046 3.87213 4.10840 4.26419 4.32610 4.38939 4.42428 4.55675 4.61928 4.69208 4.71059 4.77327 4.86257 4.92178 5.00345 5.06543 5.09320 5.10127 5.21030 5.24981 5.29953 5.35501 5.37949 5.54661 5.66794 5.87914 6.04647 6.10601 6.45850 7.15905 7.86092 8.36747 9.13475 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.007475 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.887541 B = 3744.722321 C = 4449.123681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.146 3.854 4 N -0.601 5.601 5 C -0.266 4.266 6 H 0.056 0.944 7 C -0.039 4.039 8 N -0.918 5.918 9 Si 0.957 3.043 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.272 1.272 13 C 0.156 3.844 14 C 0.054 3.946 15 N -0.527 5.527 16 C 0.029 3.971 17 C -0.115 4.115 18 C -0.123 4.123 19 C 0.028 3.972 20 H 0.042 0.958 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.251 0.749 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.006 0.994 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -2.644 -12.530 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.021 3.979 4 N -0.322 5.322 5 C -0.396 4.396 6 H 0.074 0.926 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.197 1.197 13 C 0.030 3.970 14 C -0.077 4.077 15 N -0.252 5.252 16 C -0.098 4.098 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.101 4.101 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.825 -2.725 -12.280 12.605 hybrid contribution -0.627 0.670 1.193 1.505 sum 0.197 -2.054 -11.087 11.277 Atomic orbital electron populations 1.21631 0.94809 1.01758 1.01308 1.21928 0.96024 0.98893 1.00149 1.20932 0.82910 0.94099 0.99989 1.44145 1.01704 1.84839 1.01468 1.19295 1.05651 1.23733 0.90926 0.92625 1.25750 1.00319 0.95063 1.02417 1.70120 1.34529 1.20222 1.31388 0.85449 0.77193 0.78229 0.80632 1.21141 1.21530 1.19716 1.20921 0.95503 0.93200 0.87374 1.22644 0.93974 1.00382 0.90720 1.64816 1.48350 1.08824 1.03246 1.23302 0.96044 0.97888 0.92598 1.22491 1.02108 0.95130 0.95576 1.22382 1.03220 0.96865 0.93593 1.22962 1.00644 0.91136 0.95322 0.93877 0.92491 0.91444 0.93099 0.94299 0.91321 0.96750 0.93981 0.92916 0.93896 0.97574 0.94109 0.89972 0.94768 0.89184 0.90183 0.90742 0.89461 0.95455 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.73 16 2 C -0.13 -5.22 6.26 30.60 0.19 -5.03 16 3 C 0.15 7.09 5.25 86.38 0.45 7.54 16 4 N -0.60 -30.81 2.45 -702.00 -1.72 -32.53 16 5 C -0.27 -14.93 9.49 84.03 0.80 -14.13 16 6 H 0.06 3.14 7.92 -2.91 -0.02 3.11 16 7 C -0.04 -2.18 4.93 84.86 0.42 -1.76 16 8 N -0.92 -54.23 11.32 21.65 0.25 -53.98 16 9 Si 0.96 45.29 29.61 68.60 2.03 47.32 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 C 0.16 6.88 5.34 86.38 0.46 7.34 16 14 C 0.05 2.29 5.35 86.30 0.46 2.75 16 15 N -0.53 -18.19 5.40 -883.01 -4.77 -22.96 16 16 C 0.03 0.83 5.10 86.65 0.44 1.27 16 17 C -0.12 -2.40 7.06 31.80 0.22 -2.18 16 18 C -0.12 -2.61 6.93 31.47 0.22 -2.39 16 19 C 0.03 0.81 6.69 86.45 0.58 1.39 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 3.81 5.32 -2.39 -0.01 3.80 16 26 H 0.01 0.67 8.10 -2.39 -0.02 0.65 16 27 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.05 2.09 6.73 -2.39 -0.02 2.07 16 29 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 30 H 0.01 0.28 7.81 -2.39 -0.02 0.26 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.27 7.67 -2.38 -0.02 2.25 16 33 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.03 0.87 7.57 -2.39 -0.02 0.85 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -62.08 307.45 1.72 -60.36 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.97 Total: 10.72 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.96 Total: -8.93 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -6.24 Total: -109.47 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -62.08 1.72 -60.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.749 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds