Wall clock time and date at job start Sun Mar 29 2020 22:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 H 1.09004 * 109.46960 * 302.90427 * 3 2 1 5 5 C 1.50693 * 109.47313 * 182.90077 * 3 2 1 6 6 H 1.08002 * 120.00122 * 240.00236 * 5 3 2 7 7 C 1.37881 * 120.00338 * 59.99677 * 5 3 2 8 8 N 1.31516 * 119.99530 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00192 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47237 * 120.00113 * 9 7 5 12 12 H 1.48501 * 109.47039 * 240.00177 * 9 7 5 13 13 N 1.46903 * 109.47094 * 62.89708 * 3 2 1 14 14 C 1.46908 * 110.99842 * 65.22086 * 13 3 2 15 15 C 1.46898 * 110.99779 * 189.17416 * 13 3 2 16 16 C 1.52992 * 109.47118 * 71.85609 * 15 13 3 17 17 H 1.08999 * 109.88410 * 295.18068 * 16 15 13 18 18 C 1.54324 * 109.89063 * 173.98446 * 16 15 13 19 19 C 1.55131 * 103.02353 * 218.31152 * 18 16 15 20 20 C 1.54908 * 101.65236 * 35.65087 * 19 18 16 21 21 N 1.47441 * 109.89039 * 56.21864 * 16 15 13 22 22 H 1.08999 * 109.47332 * 184.81829 * 1 2 3 23 23 H 1.08996 * 109.47362 * 304.82185 * 1 2 3 24 24 H 1.09001 * 109.46687 * 64.82325 * 1 2 3 25 25 H 1.08992 * 109.47850 * 239.99453 * 2 1 3 26 26 H 1.09006 * 109.46845 * 119.99192 * 2 1 3 27 27 H 0.97000 * 120.00030 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.46589 * 180.84826 * 14 13 3 29 29 H 1.08996 * 109.47177 * 300.84929 * 14 13 3 30 30 H 1.09003 * 109.46830 * 60.85192 * 14 13 3 31 31 H 1.09001 * 109.46970 * 191.85652 * 15 13 3 32 32 H 1.09002 * 109.47409 * 311.85274 * 15 13 3 33 33 H 1.09005 * 110.70721 * 336.69736 * 18 16 15 34 34 H 1.09006 * 110.70465 * 99.92063 * 18 16 15 35 35 H 1.09008 * 110.98920 * 277.56220 * 19 18 16 36 36 H 1.08996 * 110.99449 * 153.74961 * 19 18 16 37 37 H 1.09000 * 110.37296 * 204.09794 * 20 19 18 38 38 H 1.09005 * 110.37212 * 81.76593 * 20 19 18 39 39 H 1.00902 * 111.00330 * 240.68169 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6348 1.9711 -0.8628 5 6 3.5452 1.4431 -0.0719 6 1 4.1235 1.8973 0.7192 7 6 4.1844 0.8639 -1.1476 8 7 3.4802 0.3112 -2.1111 9 14 6.0502 0.8641 -1.2363 10 1 6.6028 1.5439 -0.0373 11 1 6.5437 -0.5357 -1.2837 12 1 6.4875 1.5847 -2.4589 13 7 1.6083 2.1145 1.2329 14 6 2.2358 1.5039 2.4126 15 6 1.8895 3.5551 1.1734 16 6 0.9258 4.2225 0.1902 17 1 1.1093 3.8518 -0.8182 18 6 1.1107 5.7541 0.2318 19 6 -0.3404 6.2852 0.0942 20 6 -1.1396 5.2210 0.8868 21 7 -0.4669 3.9400 0.5830 22 1 -0.3634 -1.0240 0.0863 23 1 -0.3634 0.5868 0.8436 24 1 -0.3633 0.4372 -0.9301 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5137 0.8901 27 1 3.9298 -0.0960 -2.8681 28 1 1.8874 2.0107 3.3125 29 1 1.9665 0.4490 2.4623 30 1 3.3191 1.5993 2.3382 31 1 1.7589 3.9920 2.1634 32 1 2.9153 3.7117 0.8396 33 1 1.5461 6.0642 1.1817 34 1 1.7253 6.0909 -0.6031 35 1 -0.6503 6.3081 -0.9507 36 1 -0.4409 7.2696 0.5512 37 1 -2.1756 5.1951 0.5491 38 1 -1.0932 5.4299 1.9557 39 1 -0.9538 3.4399 -0.1457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234029149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:43 Heat of formation + Delta-G solvation = -17.339831 kcal Electronic energy + Delta-G solvation = -16933.624542 eV Core-core repulsion = 14489.022086 eV Total energy + Delta-G solvation = -2444.602456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90598 -38.20360 -34.63570 -33.06143 -30.80509 -30.76236 -28.67088 -26.73956 -25.46981 -23.50186 -21.85403 -21.25987 -20.31517 -18.25057 -17.71356 -16.92487 -16.11641 -16.06960 -15.41321 -14.96559 -14.50273 -14.17080 -14.01520 -13.84920 -13.36452 -13.14103 -13.04692 -12.72289 -12.55121 -12.52846 -12.25834 -12.09828 -11.95773 -11.80518 -11.74379 -11.50976 -11.50261 -11.14092 -10.84030 -10.38363 -9.13521 -8.71775 -7.97007 -6.21640 1.34333 1.37746 1.46906 2.40647 3.17398 3.35750 3.64805 3.88956 4.00724 4.22324 4.40692 4.58622 4.64789 4.69242 4.79315 4.84106 4.88190 4.91633 4.99669 5.00556 5.03816 5.10842 5.17008 5.17681 5.22667 5.37812 5.44559 5.50813 5.58697 5.70957 5.87327 6.14147 6.21321 6.29259 6.50036 6.67877 6.84274 7.04657 7.48959 8.94334 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026728 B = 0.008874 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.344032 B = 3154.514179 C = 3558.664211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.517 5.517 14 C 0.039 3.961 15 C 0.083 3.917 16 C 0.091 3.909 17 H 0.030 0.970 18 C -0.134 4.134 19 C -0.144 4.144 20 C 0.048 3.952 21 N -0.669 5.669 22 H 0.040 0.960 23 H 0.062 0.938 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 8.718 4.844 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.117 3.883 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.239 5.239 14 C -0.110 4.110 15 C -0.047 4.047 16 C -0.019 4.019 17 H 0.048 0.952 18 C -0.173 4.173 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.297 5.297 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.263 8.377 5.408 12.335 hybrid contribution 2.167 0.106 -1.427 2.597 sum -5.096 8.482 3.981 10.666 Atomic orbital electron populations 1.21533 0.96086 0.99580 1.00773 1.21435 0.94668 0.98547 0.99844 1.18974 0.90785 0.91151 0.87350 0.97611 1.22081 0.94558 1.36560 1.05624 0.93498 1.25582 1.01596 0.95172 0.95546 1.70013 1.36082 1.38710 1.10207 0.85757 0.81963 0.77672 0.77730 1.19833 1.20668 1.20781 1.62365 1.56706 1.01934 1.02899 1.22165 0.96144 0.99516 0.93153 1.21912 0.95077 0.89347 0.98337 1.21982 0.89772 0.94251 0.95939 0.95181 1.22791 0.98244 0.93914 1.02320 1.23104 0.94153 1.00235 1.00808 1.22950 0.97493 0.87479 1.00178 1.61393 1.01334 1.20264 1.46676 0.94116 0.91907 0.94953 0.92423 0.95500 0.93105 0.91830 0.92728 0.97402 0.91824 0.97093 0.90644 0.91545 0.91572 0.89111 0.90389 0.90895 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.84 71.98 0.71 -4.28 16 2 C -0.11 -5.18 5.09 30.59 0.16 -5.02 16 3 C 0.22 11.22 1.64 44.17 0.07 11.30 16 4 H 0.01 0.34 6.51 -2.39 -0.02 0.32 16 5 C -0.55 -30.01 6.93 25.60 0.18 -29.84 16 6 H 0.05 2.60 5.91 -2.91 -0.02 2.59 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -52.36 11.30 21.45 0.24 -52.12 16 9 Si 0.94 44.13 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.52 -22.03 3.72 -901.47 -3.36 -25.39 16 14 C 0.04 1.57 8.91 127.69 1.14 2.71 16 15 C 0.08 3.24 4.46 86.30 0.39 3.63 16 16 C 0.09 3.16 3.28 45.26 0.15 3.31 16 17 H 0.03 1.23 6.81 -2.39 -0.02 1.22 16 18 C -0.13 -3.64 6.47 31.77 0.21 -3.44 16 19 C -0.14 -3.11 7.08 31.98 0.23 -2.88 16 20 C 0.05 1.12 7.57 86.77 0.66 1.77 16 21 N -0.67 -20.64 6.79 -482.37 -3.27 -23.92 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 2.49 7.55 -2.39 -0.02 2.47 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 3.17 6.00 -2.39 -0.01 3.15 16 26 H 0.03 1.29 6.38 -2.38 -0.02 1.28 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.06 2.21 8.02 -2.39 -0.02 2.19 16 29 H 0.05 2.21 6.34 -2.39 -0.02 2.19 16 30 H 0.01 0.33 6.20 -2.39 -0.01 0.31 16 31 H 0.06 2.29 7.82 -2.39 -0.02 2.27 16 32 H 0.01 0.48 6.87 -2.39 -0.02 0.47 16 33 H 0.07 1.96 7.79 -2.38 -0.02 1.94 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.33 10.42 8.91 -89.69 -0.80 9.62 16 Total: -1.00 -58.91 295.66 0.18 -58.73 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.22 Total: 17.70 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.32 Total: -21.16 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -6.39 Total: -101.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.91 0.18 -58.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234029149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.392 kcal (2) G-P(sol) polarization free energy of solvation -58.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds