Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47900 * 110.99815 * 2 1 4 4 C 1.54002 * 107.05481 * 145.84530 * 3 2 1 5 5 C 1.54591 * 105.14001 * 358.77246 * 4 3 2 6 6 H 1.08996 * 110.72692 * 96.40569 * 5 4 3 7 7 C 1.53000 * 110.87460 * 219.61874 * 5 4 3 8 8 N 1.46501 * 109.47006 * 180.02562 * 7 5 4 9 9 C 1.34778 * 119.99921 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99878 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99973 * 179.97438 * 9 8 7 12 12 C 1.50702 * 109.46717 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00442 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99369 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00221 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99632 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47348 * 60.00164 * 16 14 12 18 18 H 1.48504 * 109.46977 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46935 * 299.99647 * 16 14 12 20 20 C 1.48531 * 110.99911 * 117.39607 * 2 1 3 21 21 H 1.08998 * 109.46862 * 302.60859 * 1 2 3 22 22 H 1.09001 * 109.46836 * 62.60673 * 1 2 3 23 23 H 1.09002 * 109.47138 * 182.60655 * 1 2 3 24 24 H 1.08993 * 109.92347 * 26.48923 * 3 2 1 25 25 H 1.09006 * 110.07646 * 265.28528 * 3 2 1 26 26 H 1.09004 * 110.30355 * 239.85493 * 4 3 2 27 27 H 1.09003 * 110.30666 * 117.69033 * 4 3 2 28 28 H 1.09005 * 109.47012 * 300.03954 * 7 5 4 29 29 H 1.08990 * 109.47699 * 60.03987 * 7 5 4 30 30 H 0.97003 * 119.99973 * 359.97438 * 8 7 5 31 31 H 1.08995 * 109.47145 * 300.00146 * 11 9 8 32 32 H 1.08994 * 109.46760 * 60.00227 * 11 9 8 33 33 H 0.96994 * 119.99590 * 179.97438 * 15 14 12 34 34 H 1.09001 * 110.67185 * 81.83947 * 20 2 1 35 35 H 1.09004 * 110.66470 * 318.71524 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3659 0.8266 5 6 3.4492 -0.0929 1.3154 6 1 4.1116 -0.6541 0.6563 7 6 3.9604 -0.1348 2.7569 8 7 4.0923 -1.5287 3.1879 9 6 4.5300 -1.8112 4.4310 10 8 4.8150 -0.9113 5.1926 11 6 4.6652 -3.2451 4.8746 12 6 5.1700 -3.2863 6.2939 13 1 5.3723 -2.3662 6.8221 14 6 5.3737 -4.4987 6.9182 15 7 5.1269 -5.6191 6.2752 16 14 5.9987 -4.5497 8.6778 17 1 5.0379 -3.8463 9.5651 18 1 6.1321 -5.9627 9.1149 19 1 7.3224 -3.8810 8.7524 20 6 2.0013 -0.6381 1.2311 21 1 -0.3633 0.5538 0.8657 22 1 -0.3633 0.4728 -0.9125 23 1 -0.3633 -1.0266 0.0467 24 1 1.2759 2.0562 0.4570 25 1 2.2117 1.7000 -1.0204 26 1 3.2137 2.0429 1.6766 27 1 4.1471 1.6454 0.2023 28 1 4.9319 0.3564 2.8123 29 1 3.2548 0.3812 3.4078 30 1 3.8648 -2.2484 2.5786 31 1 3.6934 -3.7355 4.8198 32 1 5.3702 -3.7618 4.2235 33 1 5.2705 -6.4719 6.7143 34 1 2.0041 -1.7235 1.1316 35 1 1.4237 -0.3322 2.1035 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258738637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = -46.464693 kcal Electronic energy + Delta-G solvation = -15427.725485 eV Core-core repulsion = 12846.026986 eV Total energy + Delta-G solvation = -2581.698499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46926 -38.29305 -34.60424 -32.89459 -32.09514 -29.58477 -28.60387 -26.61841 -24.49976 -22.96288 -21.22346 -20.45071 -19.40817 -16.57259 -16.25001 -16.12643 -15.17027 -14.97772 -14.83188 -14.24640 -14.18814 -13.82087 -13.25420 -12.69654 -12.52818 -12.19677 -12.01788 -11.69665 -11.57902 -11.42221 -11.15171 -10.90318 -10.77204 -10.68117 -10.54104 -9.93545 -9.26196 -8.66294 -8.61985 -8.46516 -8.37059 -6.03461 -4.02877 3.38967 3.40878 3.46368 3.75136 3.80381 3.92238 4.46337 4.49193 4.56612 4.79269 5.03838 5.15901 5.22679 5.31274 5.34553 5.37370 5.51386 5.61222 5.66150 5.74486 5.80001 5.88954 5.98353 6.17996 6.41595 6.65172 6.80338 7.07429 7.22097 7.35969 7.98178 8.08893 8.47369 9.07713 9.26739 9.62093 11.08953 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.056640 B = 0.004681 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.233247 B = 5979.794643 C = 6255.321271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.035 3.965 4 C -0.124 4.124 5 C -0.102 4.102 6 H 0.090 0.910 7 C 0.130 3.870 8 N -0.749 5.749 9 C 0.513 3.487 10 O -0.548 6.548 11 C 0.005 3.995 12 C -0.508 4.508 13 H 0.074 0.926 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.038 3.962 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.396 0.604 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 10.498 -13.812 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.163 4.163 5 C -0.122 4.122 6 H 0.108 0.892 7 C 0.005 3.995 8 N -0.404 5.404 9 C 0.304 3.696 10 O -0.424 6.424 11 C -0.034 4.034 12 C -0.547 4.547 13 H 0.092 0.908 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.090 4.090 21 H 0.046 0.954 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.937 10.689 -13.682 18.697 hybrid contribution -0.178 -0.023 1.244 1.257 sum -7.115 10.665 -12.438 17.863 Atomic orbital electron populations 1.22518 0.87904 1.02223 1.00699 1.64732 1.08107 1.14895 1.37099 1.22874 0.95885 0.89965 1.00544 1.22396 0.97726 0.96421 0.99725 1.22320 0.96646 0.96667 0.96552 0.89192 1.21180 1.00723 0.84933 0.92650 1.46316 1.70723 1.07078 1.16247 1.22013 0.73927 0.94195 0.79514 1.90530 1.49201 1.49433 1.53258 1.19232 0.99360 0.86357 0.98486 1.21136 1.43398 0.93246 0.96904 0.90782 1.25009 0.95636 0.95465 0.98503 1.69951 1.49371 0.97380 1.37423 0.86484 0.79552 0.76622 0.84352 1.20157 1.21364 1.20129 1.23344 0.94480 1.00213 0.90951 0.95375 0.91436 0.91148 0.93799 0.90381 0.90966 0.90609 0.91929 0.92317 0.77070 0.93504 0.93461 0.92874 0.89630 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.41 60.07 0.57 0.70 16 2 N -0.52 -5.54 5.55 -238.70 -1.33 -6.86 16 3 C 0.04 0.33 6.70 -2.75 -0.02 0.31 16 4 C -0.12 -1.18 6.51 -25.37 -0.17 -1.34 16 5 C -0.10 -1.14 3.12 -88.76 -0.28 -1.42 16 6 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.13 1.88 5.00 -4.04 -0.02 1.86 16 8 N -0.75 -12.81 5.40 -60.29 -0.33 -13.13 16 9 C 0.51 11.81 7.82 -10.98 -0.09 11.72 16 10 O -0.55 -14.52 15.46 5.56 0.09 -14.43 16 11 C 0.00 0.13 5.46 -29.03 -0.16 -0.03 16 12 C -0.51 -14.94 8.92 -34.44 -0.31 -15.24 16 13 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 C 0.04 0.42 5.69 -1.90 -0.01 0.41 16 21 H 0.03 0.25 7.99 -51.93 -0.42 -0.17 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.39 7.69 -51.93 -0.40 -0.01 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.91 8.10 -51.93 -0.42 0.48 16 30 H 0.40 5.77 8.33 -40.82 -0.34 5.43 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -32.69 290.84 -7.73 -40.42 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.69 Total: -0.24 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.58 Total: -1.55 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.91 Total: -45.89 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.69 -7.73 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258738637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.048 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds