Wall clock time and date at job start Sun Mar 29 2020 22:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47396 * 2 1 4 4 N 1.46896 * 109.46746 * 239.99969 * 2 1 3 5 5 C 1.48536 * 111.00120 * 178.82697 * 4 2 1 6 6 C 1.54937 * 103.22851 * 159.72009 * 5 4 2 7 7 C 1.54601 * 102.92328 * 322.58884 * 6 5 4 8 8 H 1.08998 * 110.30363 * 263.04064 * 7 6 5 9 9 N 1.46896 * 110.39270 * 140.91720 * 7 6 5 10 10 C 1.46900 * 110.99962 * 55.59667 * 9 7 6 11 11 C 1.46897 * 111.00053 * 179.55229 * 9 7 6 12 12 C 1.50700 * 109.47382 * 169.99841 * 11 9 7 13 13 H 1.08000 * 119.99978 * 0.02562 * 12 11 9 14 14 C 1.37873 * 120.00062 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00289 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47054 * 59.99867 * 16 14 12 18 18 H 1.48493 * 109.47508 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47212 * 300.00850 * 16 14 12 20 20 C 1.47906 * 111.00186 * 296.22449 * 4 2 1 21 21 H 1.09006 * 109.46941 * 59.99601 * 1 2 3 22 22 H 1.08998 * 109.47480 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46651 * 300.00237 * 1 2 3 24 24 H 1.08997 * 109.47019 * 120.00675 * 2 1 3 25 25 H 1.08995 * 109.47399 * 174.25061 * 3 2 1 26 26 H 1.09001 * 109.47467 * 294.25178 * 3 2 1 27 27 H 1.09005 * 109.47261 * 54.24798 * 3 2 1 28 28 H 1.08993 * 110.67060 * 278.15669 * 5 4 2 29 29 H 1.09009 * 110.66425 * 41.28582 * 5 4 2 30 30 H 1.08998 * 110.72249 * 204.23170 * 6 5 4 31 31 H 1.09002 * 110.87777 * 81.01920 * 6 5 4 32 32 H 1.08997 * 109.47477 * 54.98566 * 10 9 7 33 33 H 1.09001 * 109.47135 * 174.98362 * 10 9 7 34 34 H 1.09001 * 109.47497 * 294.97852 * 10 9 7 35 35 H 1.09003 * 109.46676 * 289.99922 * 11 9 7 36 36 H 1.08997 * 109.47257 * 49.99303 * 11 9 7 37 37 H 0.97001 * 120.00107 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.91508 * 333.50911 * 20 4 2 39 39 H 1.09002 * 109.91643 * 94.80323 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.5042 -0.6878 -1.2481 6 6 3.8309 -1.8537 -2.2149 7 6 2.7593 -2.9094 -1.8580 8 1 3.1681 -3.6435 -1.1637 9 7 2.2715 -3.5748 -3.0734 10 6 3.3823 -4.1640 -3.8329 11 6 1.2596 -4.5888 -2.7485 12 6 0.6084 -5.0736 -4.0181 13 1 0.9158 -4.6692 -4.9712 14 6 -0.3791 -6.0342 -3.9631 15 7 -0.7532 -6.5270 -2.8025 16 14 -1.1868 -6.6347 -5.5367 17 1 -0.1569 -7.2295 -6.4259 18 1 -2.2097 -7.6598 -5.2082 19 1 -1.8362 -5.4915 -6.2272 20 6 1.6210 -2.1168 -1.1890 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.1252 1.4441 0.1029 26 1 1.7633 1.9257 -0.9370 27 1 1.5951 1.9852 0.8340 28 1 3.8731 0.2572 -1.6466 29 1 3.9221 -0.8791 -0.2597 30 1 4.8320 -2.2415 -2.0270 31 1 3.7299 -1.5373 -3.2531 32 1 3.9499 -4.8333 -3.1864 33 1 2.9864 -4.7256 -4.6791 34 1 4.0350 -3.3705 -4.1969 35 1 1.7359 -5.4277 -2.2411 36 1 0.5035 -4.1516 -2.0963 37 1 -1.4482 -7.2026 -2.7638 38 1 1.4852 -2.4568 -0.1624 39 1 0.6967 -2.2478 -1.7517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:36 Heat of formation + Delta-G solvation = -15.124124 kcal Electronic energy + Delta-G solvation = -16455.007526 eV Core-core repulsion = 14010.501150 eV Total energy + Delta-G solvation = -2444.506376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54741 -37.82217 -35.09585 -33.99902 -30.54773 -29.81751 -28.75041 -27.82350 -25.99384 -23.70776 -22.62247 -21.12318 -20.50772 -18.55049 -17.28062 -17.18250 -16.67548 -15.84044 -15.27013 -15.08741 -15.00981 -14.30304 -14.02362 -13.89667 -13.67722 -13.30458 -13.06923 -12.96319 -12.88535 -12.68356 -12.43664 -12.28927 -12.15344 -12.01112 -11.87185 -11.76613 -11.67397 -11.53957 -11.20879 -10.60319 -9.33507 -8.99285 -8.20269 -6.30250 1.40684 1.44419 1.52193 2.40507 3.00739 3.11939 3.29141 3.67251 3.81011 4.06582 4.16861 4.27267 4.34988 4.43434 4.45394 4.57444 4.66170 4.76497 4.82476 4.87204 4.93324 4.96777 5.00731 5.02110 5.03477 5.11429 5.18360 5.26054 5.30427 5.35227 5.40735 5.65845 5.95517 6.09257 6.21928 6.35810 6.67753 6.85863 7.39280 8.90835 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033347 B = 0.006626 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.458838 B = 4225.030135 C = 4757.238511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 C -0.135 4.135 4 N -0.518 5.518 5 C 0.043 3.957 6 C -0.107 4.107 7 C 0.067 3.933 8 H 0.023 0.977 9 N -0.537 5.537 10 C 0.040 3.960 11 C 0.207 3.793 12 C -0.523 4.523 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.058 3.942 21 H 0.057 0.943 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.009 0.991 33 H 0.056 0.944 34 H 0.082 0.918 35 H -0.045 1.045 36 H 0.008 0.992 37 H 0.264 0.736 38 H 0.032 0.968 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 13.091 4.815 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.192 4.192 4 N -0.244 5.244 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.042 4.042 8 H 0.041 0.959 9 N -0.262 5.262 10 C -0.108 4.108 11 C 0.081 3.919 12 C -0.562 4.562 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.070 4.070 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.101 0.899 35 H -0.027 1.027 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.573 13.609 4.168 16.122 hybrid contribution -0.143 -1.989 0.767 2.136 sum 7.431 11.620 4.936 14.649 Atomic orbital electron populations 1.21826 0.94551 1.01104 1.02562 1.21928 0.95988 0.96426 0.90252 1.21787 1.01278 0.93463 1.02716 1.64855 1.10043 1.11121 1.38352 1.23228 0.87490 0.99488 0.98250 1.22566 0.97080 0.94013 1.00819 1.22540 0.95205 0.95429 0.91041 0.95870 1.62181 1.12713 1.31061 1.20204 1.22222 0.92572 0.98269 0.97762 1.19389 0.89689 0.87191 0.95617 1.21442 1.19802 1.21166 0.93753 0.91910 1.25920 0.97374 0.96495 0.99867 1.70086 1.31290 1.29876 1.26396 0.85429 0.78143 0.77995 0.79012 1.19096 1.20798 1.19403 1.22659 0.98573 0.88313 0.97466 0.92421 0.94765 0.90295 0.94500 0.91870 0.92177 0.90696 0.88113 0.93114 0.89638 0.90223 0.97220 0.92499 0.89935 1.02718 0.97430 0.92713 0.94967 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.16 71.98 0.66 -3.00 16 2 C 0.06 1.56 2.37 44.92 0.11 1.66 16 3 C -0.13 -2.52 8.87 71.98 0.64 -1.88 16 4 N -0.52 -15.68 5.11 -857.86 -4.38 -20.06 16 5 C 0.04 1.06 5.39 86.65 0.47 1.53 16 6 C -0.11 -3.02 5.57 31.80 0.18 -2.84 16 7 C 0.07 2.54 2.71 45.80 0.12 2.66 16 8 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 9 N -0.54 -24.23 4.53 -896.44 -4.06 -28.28 16 10 C 0.04 1.57 9.02 127.69 1.15 2.73 16 11 C 0.21 11.48 4.51 85.56 0.39 11.86 16 12 C -0.52 -30.53 8.39 25.60 0.21 -30.31 16 13 H 0.06 3.59 7.17 -2.91 -0.02 3.56 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 16 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 C 0.06 2.18 4.58 86.45 0.40 2.58 16 21 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.03 1.02 7.28 -2.39 -0.02 1.00 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 0.92 7.98 -2.39 -0.02 0.90 16 25 H 0.06 1.04 7.22 -2.39 -0.02 1.02 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.10 2.08 7.78 -2.39 -0.02 2.06 16 29 H 0.05 1.13 8.01 -2.38 -0.02 1.12 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.37 7.36 -2.39 -0.02 2.36 16 32 H 0.01 0.36 8.13 -2.39 -0.02 0.34 16 33 H 0.06 2.44 6.66 -2.39 -0.02 2.42 16 34 H 0.08 2.66 6.81 -2.39 -0.02 2.64 16 35 H -0.04 -2.71 8.12 -2.39 -0.02 -2.72 16 36 H 0.01 0.45 6.41 -2.39 -0.02 0.44 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.03 1.19 7.64 -2.39 -0.02 1.17 16 39 H 0.06 2.66 6.74 -2.39 -0.02 2.64 16 Total: -1.00 -65.53 300.29 -0.36 -65.89 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.98 Total: 7.05 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.78 Total: -14.48 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -8.15 Total: -105.63 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.53 -0.36 -65.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -65.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds