Wall clock time and date at job start Sun Mar 29 2020 22:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86795 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47279 * 270.00462 * 3 2 1 5 5 H 1.48503 * 109.47096 * 30.00942 * 3 2 1 6 6 H 1.48506 * 109.46806 * 150.00235 * 3 2 1 7 7 C 1.38809 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00174 * 359.97438 * 7 2 1 9 9 O 1.34860 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.34738 * 117.00089 * 179.97438 * 9 7 2 11 11 O 1.21514 * 120.00289 * 359.97438 * 10 9 7 12 12 C 1.47576 * 119.99889 * 180.02562 * 10 9 7 13 13 C 1.40110 * 120.57874 * 0.29461 * 12 10 9 14 14 C 1.38321 * 118.29767 * 180.26837 * 13 12 10 15 15 C 1.38374 * 119.35118 * 359.43610 * 14 13 12 16 16 N 1.31932 * 121.12153 * 0.30065 * 15 14 13 17 17 C 1.31803 * 121.87180 * 359.97438 * 16 15 14 18 18 Cl 1.73605 * 119.74442 * 179.97438 * 17 16 15 19 19 H 0.96995 * 119.99851 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.85235 * 359.97438 * 13 12 10 21 21 H 1.08002 * 120.32816 * 179.71917 * 14 13 12 22 22 H 1.07999 * 119.43993 * 180.28235 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7003 6 1 3.5458 1.4400 0.7000 7 6 2.0082 -1.2022 -0.0005 8 1 1.4681 -2.1375 -0.0005 9 8 3.3568 -1.2022 -0.0011 10 6 3.9684 -2.4028 -0.0010 11 8 3.3066 -3.4219 -0.0001 12 6 5.4422 -2.4800 -0.0010 13 6 6.2171 -1.3128 0.0052 14 6 7.5944 -1.4401 -0.0008 15 6 8.1588 -2.7035 -0.0007 16 7 7.4057 -3.7868 -0.0009 17 6 6.0894 -3.7193 -0.0008 18 17 5.1520 -5.1805 -0.0018 19 1 -0.4850 0.8400 0.0004 20 1 5.7510 -0.3386 0.0096 21 1 8.2233 -0.5620 -0.0009 22 1 9.2341 -2.8046 -0.0007 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306426385.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:34 Heat of formation + Delta-G solvation = -60.205957 kcal Electronic energy + Delta-G solvation = -13027.294878 eV Core-core repulsion = 10380.491731 eV Total energy + Delta-G solvation = -2646.803146 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 227.014 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.70915 -40.55485 -37.74655 -37.30127 -34.59260 -33.88827 -32.28897 -28.03103 -25.61009 -24.58612 -22.24248 -20.20855 -19.17522 -18.25817 -17.59254 -17.09086 -16.89130 -15.98978 -15.51025 -15.40125 -14.71013 -14.50261 -14.06621 -13.42490 -13.32055 -12.78152 -12.45528 -12.42493 -12.28724 -11.86451 -11.20338 -11.12920 -10.85164 -10.60595 -10.12668 -8.56955 -6.42053 -0.62607 -0.03963 0.75456 1.33963 1.36236 1.53960 1.67555 2.12448 2.27920 2.57341 2.93856 3.42325 3.61604 3.84827 3.86176 4.26692 4.51337 4.87732 4.97512 5.38951 5.45771 5.84571 6.46226 6.51406 6.77200 7.49580 8.55520 Molecular weight = 227.01amu Principal moments of inertia in cm(-1) A = 0.035293 B = 0.009381 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.172387 B = 2984.158855 C = 3767.487669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.240 1.240 7 C -0.404 4.404 8 H 0.059 0.941 9 O -0.243 6.243 10 C 0.444 3.556 11 O -0.543 6.543 12 C -0.160 4.160 13 C -0.025 4.025 14 C -0.152 4.152 15 C 0.143 3.857 16 N -0.499 5.499 17 C 0.201 3.799 18 Cl -0.019 7.019 19 H 0.291 0.709 20 H 0.163 0.837 21 H 0.202 0.798 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.174 2.156 0.034 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.163 1.163 7 C -0.480 4.480 8 H 0.077 0.923 9 O -0.152 6.152 10 C 0.291 3.709 11 O -0.438 6.438 12 C -0.165 4.165 13 C -0.051 4.051 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.211 5.211 17 C 0.038 3.962 18 Cl 0.010 6.990 19 H 0.101 0.899 20 H 0.181 0.819 21 H 0.219 0.781 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 19.083 1.041 0.037 19.111 hybrid contribution -1.331 0.566 -0.019 1.447 sum 17.752 1.607 0.019 17.824 Atomic orbital electron populations 1.69692 1.07779 1.30453 1.47306 1.25646 0.95996 1.02915 0.93974 0.85085 0.79432 0.75275 0.80010 1.18195 1.19155 1.16309 1.20361 0.77363 0.96019 1.54265 0.92347 1.83488 1.22192 1.31511 1.78058 1.21107 0.89136 0.82292 0.78365 1.90749 1.67420 1.36274 1.49346 1.19848 0.90322 0.95306 1.11016 1.22287 0.95073 0.97588 0.90145 1.22753 0.93764 1.01310 0.99253 1.23890 1.01956 0.86182 0.89342 1.67263 1.02931 1.35794 1.15092 1.21759 0.90264 0.87034 0.97185 1.98434 1.69916 1.34870 1.95759 0.89915 0.81933 0.78057 0.76241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.56 13.96 21.63 0.30 -54.26 14 2 C 0.02 0.86 5.49 84.89 0.47 1.32 14 3 Si 0.98 41.39 28.62 68.60 1.96 43.35 14 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 14 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 6 H -0.24 -9.24 7.11 99.48 0.71 -8.53 14 7 C -0.40 -24.68 10.11 67.96 0.69 -23.99 14 8 H 0.06 4.08 7.09 -2.91 -0.02 4.06 14 9 O -0.24 -12.81 7.90 11.22 0.09 -12.72 14 10 C 0.44 21.98 7.83 70.29 0.55 22.53 14 11 O -0.54 -30.28 13.25 19.79 0.26 -30.02 14 12 C -0.16 -5.99 5.89 -19.98 -0.12 -6.10 14 13 C -0.03 -0.67 9.74 22.74 0.22 -0.45 14 14 C -0.15 -2.44 10.09 22.32 0.23 -2.21 14 15 C 0.14 2.48 11.17 84.71 0.95 3.42 14 16 N -0.50 -14.01 10.33 -185.50 -1.92 -15.92 14 17 C 0.20 7.14 7.32 85.08 0.62 7.77 14 18 Cl -0.02 -0.72 26.20 -2.72 -0.07 -0.79 14 19 H 0.29 15.59 8.31 -92.71 -0.77 14.82 14 20 H 0.16 4.09 7.70 -2.91 -0.02 4.07 14 21 H 0.20 1.14 8.06 -2.91 -0.02 1.12 14 22 H 0.22 1.47 8.06 -2.91 -0.02 1.44 14 Total: -1.00 -75.97 228.44 5.49 -70.48 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: 1.26 Total: -2.38 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 3.60 Total: 2.28 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.61 Total: -70.18 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: 0.35 Total: -42.75 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.96 Total: 43.35 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -75.97 5.49 -70.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306426385.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.274 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds