Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47470 * 2 1 4 4 C 1.34770 * 120.00300 * 179.97438 * 3 2 1 5 5 O 1.21593 * 120.00087 * 355.01421 * 4 3 2 6 6 N 1.34775 * 120.00174 * 175.00924 * 4 3 2 7 7 C 1.46922 * 120.63138 * 4.94386 * 6 4 3 8 8 C 1.53625 * 108.54468 * 126.36684 * 7 6 4 9 9 C 1.53041 * 109.24023 * 54.85816 * 8 7 6 10 10 C 1.53039 * 109.53881 * 298.50827 * 9 8 7 11 11 H 1.08998 * 109.49982 * 301.41733 * 10 9 8 12 12 C 1.50697 * 109.52337 * 181.33135 * 10 9 8 13 13 H 1.08000 * 120.00185 * 0.15148 * 12 10 9 14 14 C 1.37877 * 119.99980 * 180.15069 * 12 10 9 15 15 N 1.31519 * 119.99944 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00262 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47152 * 89.99579 * 16 14 12 18 18 H 1.48500 * 109.47279 * 209.99724 * 16 14 12 19 19 H 1.48503 * 109.47037 * 330.00166 * 16 14 12 20 20 C 1.46929 * 120.63306 * 185.22168 * 6 4 3 21 21 H 1.08996 * 109.47229 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46881 * 300.00135 * 1 2 3 23 23 H 1.08993 * 109.46818 * 59.99848 * 1 2 3 24 24 H 1.09006 * 109.47136 * 119.99595 * 2 1 3 25 25 H 1.09000 * 109.47460 * 239.99377 * 2 1 3 26 26 H 0.97003 * 119.99576 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.59266 * 246.20133 * 7 6 4 28 28 H 1.09010 * 109.58524 * 6.62861 * 7 6 4 29 29 H 1.09006 * 109.63279 * 294.86630 * 8 7 6 30 30 H 1.09000 * 109.43643 * 174.72949 * 8 7 6 31 31 H 1.08999 * 109.45633 * 178.49268 * 9 8 7 32 32 H 1.08993 * 109.44957 * 58.52609 * 9 8 7 33 33 H 0.97002 * 119.99857 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.58693 * 353.38031 * 20 6 4 35 35 H 1.09003 * 109.58526 * 113.79728 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1328 0.7072 0.0925 6 7 3.7936 2.8937 -0.1010 7 6 2.8549 4.0239 -0.1042 8 6 3.2808 5.0160 0.9886 9 6 4.7423 5.4127 0.7677 10 6 5.6311 4.1712 0.8719 11 1 5.5026 3.7130 1.8524 12 6 7.0732 4.5673 0.6868 13 1 7.3313 5.6017 0.5146 14 6 8.0632 3.6090 0.7372 15 7 7.7490 2.3493 0.9473 16 14 9.8510 4.0999 0.5085 17 1 10.4467 4.4288 1.8284 18 1 10.5990 2.9735 -0.1054 19 1 9.9284 5.2878 -0.3793 20 6 5.2321 3.1699 -0.2167 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.3881 2.1185 -0.0004 27 1 2.8779 4.5154 -1.0768 28 1 1.8471 3.6625 0.1011 29 1 3.1744 4.5498 1.9682 30 1 2.6510 5.9042 0.9377 31 1 5.0404 6.1372 1.5256 32 1 4.8524 5.8562 -0.2218 33 1 8.4455 1.6750 0.9824 34 1 5.7934 2.2448 -0.0858 35 1 5.4451 3.5931 -1.1984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307491873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = -60.067261 kcal Electronic energy + Delta-G solvation = -16304.809841 eV Core-core repulsion = 13722.521489 eV Total energy + Delta-G solvation = -2582.288351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24702 -38.54105 -36.25224 -35.22574 -33.48439 -31.67587 -30.84073 -27.02608 -26.07548 -23.73264 -23.32036 -21.72041 -20.39191 -19.04600 -18.19793 -17.25924 -16.69408 -16.49309 -15.45328 -15.31646 -15.17673 -15.04625 -14.46328 -14.29101 -13.88544 -13.52820 -13.19244 -12.87193 -12.75288 -12.56475 -12.35864 -12.24405 -12.20760 -11.84853 -11.62158 -11.22654 -10.94584 -10.81838 -10.50668 -10.14159 -9.23967 -8.08559 -6.26763 1.41253 1.42363 1.53430 1.84392 2.24683 2.43127 3.09287 3.21342 4.03757 4.13046 4.19393 4.26977 4.31623 4.55733 4.61560 4.73219 4.81774 4.84612 4.97636 5.09831 5.11886 5.24120 5.28024 5.29746 5.35405 5.56873 5.61770 5.67023 5.90515 5.99827 6.19518 6.37226 6.86996 7.16468 7.43464 7.70380 8.94545 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036935 B = 0.007573 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.906547 B = 3696.426690 C = 4328.688857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 N -0.735 5.735 4 C 0.688 3.312 5 O -0.644 6.644 6 N -0.629 5.629 7 C 0.109 3.891 8 C -0.126 4.126 9 C -0.105 4.105 10 C 0.037 3.963 11 H -0.017 1.017 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.007 3.993 15 N -0.916 5.916 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.260 1.260 20 C 0.142 3.858 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.409 0.591 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 2.659 -2.883 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.003 3.997 3 N -0.396 5.396 4 C 0.389 3.611 5 O -0.526 6.526 6 N -0.365 5.365 7 C -0.013 4.013 8 C -0.164 4.164 9 C -0.143 4.143 10 C 0.017 3.983 11 H 0.001 0.999 12 C -0.575 4.575 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.555 5.555 16 Si 0.785 3.215 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.184 1.184 20 C 0.019 3.981 21 H 0.107 0.893 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.248 0.752 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.682 1.820 -2.824 16.038 hybrid contribution 1.262 0.061 0.115 1.269 sum -14.420 1.881 -2.709 14.792 Atomic orbital electron populations 1.21926 0.90766 1.04401 1.03453 1.21251 0.96483 0.81290 1.00699 1.45222 1.03940 1.09956 1.80444 1.16324 0.83429 0.83329 0.78009 1.90883 1.56706 1.45157 1.59819 1.47705 1.08712 1.04315 1.75766 1.21972 0.92251 0.86896 1.00148 1.21987 0.96678 0.99686 0.98028 1.21505 0.94533 0.97299 1.00914 1.18925 0.94056 0.92481 0.92788 0.99930 1.21532 0.92128 0.94173 1.49626 0.91832 1.25944 1.03693 0.94849 0.94700 1.70127 1.34048 1.01539 1.49753 0.85533 0.79597 0.77939 0.78459 1.20103 1.21428 1.18418 1.21570 0.77355 1.01686 0.97479 0.89302 0.91077 0.90714 0.93823 0.93261 0.75226 0.90044 0.88056 0.93389 0.87593 0.92998 0.92267 0.93220 0.90815 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.03 71.98 0.72 -1.42 16 2 C 0.13 3.28 6.40 86.38 0.55 3.83 16 3 N -0.73 -21.92 5.46 -478.53 -2.62 -24.53 16 4 C 0.69 29.83 8.30 179.06 1.49 31.32 16 5 O -0.64 -35.67 15.77 -4.01 -0.06 -35.73 16 6 N -0.63 -26.22 2.97 -836.05 -2.48 -28.70 16 7 C 0.11 3.10 6.42 86.51 0.56 3.65 16 8 C -0.13 -3.71 6.10 30.82 0.19 -3.52 16 9 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 10 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 11 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 12 C -0.54 -30.16 8.57 25.60 0.22 -29.94 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.01 0.42 5.30 84.65 0.45 0.87 16 15 N -0.92 -57.51 11.39 21.45 0.24 -57.26 16 16 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.14 7.37 5.41 86.36 0.47 7.84 16 21 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.41 8.82 5.96 -92.71 -0.55 8.27 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 2.03 5.64 -2.38 -0.01 2.02 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.07 4.61 5.11 -2.39 -0.01 4.60 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -77.29 280.78 2.40 -74.89 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.52 Total: 13.63 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.77 Total: 10.59 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.85 Total: -110.50 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.06 Total: -35.73 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.29 2.40 -74.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307491873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.828 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds