Wall clock time and date at job start Sun Mar 29 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47147 * 2 1 4 4 C 1.48067 * 111.00109 * 66.04530 * 3 2 1 5 5 C 1.50743 * 112.85255 * 84.29745 * 4 3 2 6 6 C 1.54510 * 108.94223 * 92.70889 * 5 4 3 7 7 N 1.40084 * 111.51318 * 283.98136 * 6 5 4 8 8 C 1.46899 * 111.00065 * 188.14278 * 7 6 5 9 9 C 1.50700 * 109.47103 * 293.94918 * 8 7 6 10 10 H 1.08004 * 119.99928 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00138 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99728 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47304 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47227 * 120.00265 * 13 11 9 16 16 H 1.48501 * 109.46778 * 240.00018 * 13 11 9 17 17 C 1.47685 * 114.56603 * 61.44811 * 7 6 5 18 18 H 1.08995 * 109.74016 * 38.35258 * 17 7 6 19 19 C 1.53000 * 109.73507 * 158.99865 * 17 7 6 20 20 C 1.47676 * 111.05699 * 193.74689 * 3 2 1 21 21 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46704 * 300.00044 * 1 2 3 23 23 H 1.08995 * 109.47210 * 60.00286 * 1 2 3 24 24 H 1.08998 * 109.46985 * 239.99777 * 2 1 3 25 25 H 1.09002 * 109.46777 * 120.00215 * 2 1 3 26 26 H 1.09002 * 108.79124 * 323.45973 * 4 3 2 27 27 H 1.08998 * 108.78637 * 205.13316 * 4 3 2 28 28 H 1.08992 * 109.56130 * 212.55173 * 5 4 3 29 29 H 1.09002 * 109.55734 * 332.87410 * 5 4 3 30 30 H 1.08999 * 109.07060 * 44.49805 * 6 5 4 31 31 H 1.08999 * 109.07718 * 163.45326 * 6 5 4 32 32 H 1.09003 * 109.47127 * 53.94871 * 8 7 6 33 33 H 1.09004 * 109.47239 * 173.94869 * 8 7 6 34 34 H 0.96996 * 119.99392 * 179.97438 * 12 11 9 35 35 H 1.09009 * 109.47248 * 60.00266 * 19 17 7 36 36 H 1.09005 * 109.47467 * 179.97438 * 19 17 7 37 37 H 1.08994 * 109.47184 * 299.99986 * 19 17 7 38 38 H 1.09005 * 109.03838 * 72.22228 * 20 3 2 39 39 H 1.09002 * 108.83323 * 313.46434 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6675 2.0724 1.2632 5 6 2.6572 1.8083 2.3691 6 6 3.7259 2.9242 2.3628 7 7 4.6448 2.7496 1.3200 8 6 5.7608 3.6976 1.4374 9 6 5.2510 5.1012 1.2346 10 1 4.2027 5.2719 1.0386 11 6 6.1226 6.1675 1.3004 12 7 7.3989 5.9597 1.5407 13 14 5.4905 7.9073 1.0497 14 1 4.0276 7.8709 0.7971 15 1 5.7632 8.7133 2.2668 16 1 6.1783 8.5208 -0.1146 17 6 4.0539 2.7927 -0.0327 18 1 3.2743 3.5535 -0.0698 19 6 5.1399 3.1156 -1.0609 20 6 3.4587 1.4390 -0.3275 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.6828 1.7330 1.5849 27 1 1.6252 3.1458 1.0788 28 1 2.1400 1.8038 3.3285 29 1 3.1367 0.8429 2.2068 30 1 3.2326 3.8890 2.2449 31 1 4.2593 2.9120 3.3133 32 1 6.2069 3.6127 2.4284 33 1 6.5115 3.4708 0.6804 34 1 8.0120 6.7098 1.5866 35 1 5.9114 2.3461 -1.0284 36 1 4.6994 3.1459 -2.0575 37 1 5.5828 4.0842 -0.8295 38 1 3.5910 1.2163 -1.3863 39 1 3.9821 0.6856 0.2612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307544784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:13 Heat of formation + Delta-G solvation = -7.652302 kcal Electronic energy + Delta-G solvation = -17007.934833 eV Core-core repulsion = 14563.752460 eV Total energy + Delta-G solvation = -2444.182373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87854 -37.65326 -34.73629 -34.18722 -32.39336 -29.68257 -29.10533 -26.65231 -25.52255 -24.18121 -23.07328 -20.82492 -20.30427 -18.44349 -17.19807 -17.10021 -16.73876 -16.44408 -15.61229 -15.32538 -14.40655 -14.30610 -14.14400 -13.89247 -13.45930 -13.27532 -13.03511 -12.96383 -12.84346 -12.61071 -12.47245 -12.26560 -12.19220 -11.96677 -11.73509 -11.71683 -11.52528 -11.38872 -11.05825 -10.58557 -9.07475 -8.91727 -8.12480 -6.31670 1.34271 1.36582 1.47452 2.37194 2.98088 3.10577 3.34707 3.93051 4.01267 4.12230 4.32967 4.33763 4.42460 4.45505 4.57226 4.64529 4.74817 4.82630 4.89657 4.93499 5.00351 5.03347 5.06215 5.12108 5.20286 5.29618 5.31272 5.39497 5.41650 5.48613 5.59256 5.78122 6.10803 6.18891 6.29315 6.34628 6.83862 6.92770 7.38587 8.88156 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.007301 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.786136 B = 3833.936257 C = 3905.780538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.555 5.555 4 C 0.057 3.943 5 C -0.135 4.135 6 C 0.085 3.915 7 N -0.555 5.555 8 C 0.203 3.797 9 C -0.541 4.541 10 H 0.047 0.953 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.106 3.894 18 H 0.027 0.973 19 C -0.142 4.142 20 C 0.077 3.923 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.003 0.997 31 H 0.046 0.954 32 H -0.006 1.006 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 -10.213 -2.678 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.281 5.281 4 C -0.070 4.070 5 C -0.174 4.174 6 C -0.046 4.046 7 N -0.279 5.279 8 C 0.077 3.923 9 C -0.580 4.580 10 H 0.065 0.935 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.777 3.223 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.002 4.002 18 H 0.045 0.955 19 C -0.200 4.200 20 C -0.050 4.050 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.625 -10.343 -2.960 15.839 hybrid contribution 0.422 1.669 0.714 1.864 sum -11.203 -8.674 -2.246 14.345 Atomic orbital electron populations 1.21789 0.93772 1.02235 1.02116 1.22093 0.96804 0.88008 1.00738 1.62175 1.15835 1.16994 1.33054 1.21951 0.98710 0.98680 0.87694 1.21991 0.96723 0.98390 1.00323 1.20827 0.93621 0.95971 0.94151 1.59644 1.12301 1.53274 1.02703 1.19499 0.89546 0.88161 0.95139 1.21860 0.94235 0.93556 1.48392 0.93453 1.25718 0.94962 1.02912 0.94874 1.70062 1.03715 1.32522 1.50140 0.85614 0.78503 0.80315 0.77913 1.19576 1.20500 1.20208 1.20998 0.95128 0.95682 0.88355 0.95495 1.21923 0.98252 1.02247 0.97541 1.21835 0.86640 0.96008 1.00538 0.90744 0.92716 0.92448 0.90507 0.95116 0.89123 0.93422 0.89527 0.91728 0.97939 0.93520 0.98777 0.95895 0.92673 0.92910 0.91417 0.92567 0.89937 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.82 16 2 C 0.05 1.13 5.58 86.31 0.48 1.61 16 3 N -0.56 -15.79 4.72 -899.74 -4.25 -20.04 16 4 C 0.06 1.65 5.01 85.35 0.43 2.08 16 5 C -0.13 -4.12 5.60 30.38 0.17 -3.95 16 6 C 0.08 3.41 4.65 88.05 0.41 3.82 16 7 N -0.56 -24.22 4.13 -891.48 -3.68 -27.90 16 8 C 0.20 10.67 4.51 85.56 0.39 11.06 16 9 C -0.54 -30.01 6.42 25.60 0.16 -29.85 16 10 H 0.05 2.66 6.43 -2.91 -0.02 2.64 16 11 C 0.01 0.83 5.46 84.65 0.46 1.29 16 12 N -0.92 -54.84 13.29 21.45 0.28 -54.56 16 13 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.11 4.17 1.78 44.04 0.08 4.24 16 18 H 0.03 1.18 6.36 -2.39 -0.02 1.16 16 19 C -0.14 -5.58 7.70 71.98 0.55 -5.02 16 20 C 0.08 2.47 4.61 85.43 0.39 2.86 16 21 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 0.98 6.22 -2.38 -0.01 0.96 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 25 H 0.03 0.69 7.59 -2.39 -0.02 0.67 16 26 H 0.09 2.15 5.81 -2.39 -0.01 2.13 16 27 H 0.05 1.61 6.52 -2.39 -0.02 1.59 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.00 6.65 -2.39 -0.02 1.99 16 30 H 0.00 0.12 6.35 -2.39 -0.02 0.10 16 31 H 0.05 1.96 7.88 -2.39 -0.02 1.94 16 32 H -0.01 -0.34 7.94 -2.39 -0.02 -0.36 16 33 H 0.02 1.28 6.17 -2.39 -0.01 1.26 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.05 2.00 7.96 -2.38 -0.02 1.98 16 36 H 0.07 2.25 8.12 -2.38 -0.02 2.23 16 37 H 0.06 2.65 5.38 -2.39 -0.01 2.64 16 38 H 0.08 2.39 7.71 -2.38 -0.02 2.37 16 39 H 0.04 1.24 7.07 -2.39 -0.02 1.22 16 Total: -1.00 -60.65 285.12 -0.37 -61.02 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.01 Total: 8.80 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.24 Total: -13.68 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -7.64 Total: -102.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.65 -0.37 -61.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307544784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.370 kcal (2) G-P(sol) polarization free energy of solvation -60.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds