Wall clock time and date at job start Sun Mar 29 2020 22:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.50686 * 2 1 4 4 C 1.53053 * 109.48805 * 120.05523 * 2 1 3 5 5 H 1.08995 * 109.49021 * 58.39714 * 4 2 1 6 6 C 1.53000 * 109.48666 * 298.35605 * 4 2 1 7 7 N 1.46951 * 109.36680 * 178.36884 * 4 2 1 8 8 C 1.46896 * 111.00411 * 176.81257 * 7 4 2 9 9 C 1.53003 * 109.47542 * 190.00083 * 8 7 4 10 10 C 1.50696 * 109.47333 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99853 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00213 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47365 * 59.99501 * 14 12 10 16 16 H 1.48497 * 109.47418 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46789 * 300.00026 * 14 12 10 18 18 C 1.46965 * 110.87844 * 300.67820 * 7 4 2 19 19 C 1.53043 * 109.36311 * 59.31989 * 18 7 4 20 20 N 1.46952 * 109.49012 * 239.94224 * 2 1 3 21 21 C 1.46906 * 110.99889 * 56.84590 * 20 2 1 22 22 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47103 * 300.05630 * 1 2 3 24 24 H 1.09005 * 109.47094 * 60.05501 * 1 2 3 25 25 H 1.08996 * 109.47245 * 60.00273 * 6 4 2 26 26 H 1.09007 * 109.46919 * 180.02562 * 6 4 2 27 27 H 1.09001 * 109.47155 * 299.99763 * 6 4 2 28 28 H 1.09008 * 109.46668 * 309.99948 * 8 7 4 29 29 H 1.09001 * 109.47293 * 69.99587 * 8 7 4 30 30 H 1.08998 * 109.46992 * 299.99843 * 9 8 7 31 31 H 1.09001 * 109.47231 * 59.99467 * 9 8 7 32 32 H 0.96997 * 119.99844 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.48664 * 179.28533 * 18 7 4 34 34 H 1.08996 * 109.48726 * 299.32581 * 18 7 4 35 35 H 1.08997 * 109.49005 * 181.63076 * 19 18 7 36 36 H 1.09011 * 109.49357 * 61.56649 * 19 18 7 37 37 H 1.09001 * 109.46544 * 60.00042 * 21 20 2 38 38 H 1.09001 * 109.47272 * 179.97438 * 21 20 2 39 39 H 1.09000 * 109.47033 * 300.00098 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 1.2488 5 1 1.6543 -1.7417 1.2628 6 6 1.5651 0.0206 2.4988 7 7 3.5096 -0.7553 1.2266 8 6 4.0410 -1.3752 2.4477 9 6 5.5561 -1.1697 2.5063 10 6 6.1011 -1.8052 3.7593 11 1 5.4337 -2.3052 4.4455 12 6 7.4519 -1.7482 4.0297 13 7 8.2647 -1.1388 3.1943 14 14 8.1277 -2.5365 5.5825 15 1 7.8250 -3.9902 5.5719 16 1 9.5981 -2.3369 5.6395 17 1 7.4970 -1.9083 6.7713 18 6 3.9999 -1.4492 0.0274 19 6 3.4893 -0.7266 -1.2214 20 7 2.0203 -0.6939 -1.1990 21 6 1.4889 -0.0740 -2.4203 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5147 0.8895 24 1 -0.3633 0.5130 -0.8905 25 1 0.4755 0.0460 2.5140 26 1 1.9293 -0.4941 3.3881 27 1 1.9522 1.0394 2.4850 28 1 3.5778 -0.9144 3.3202 29 1 3.8191 -2.4424 2.4396 30 1 6.0192 -1.6305 1.6338 31 1 5.7780 -0.1026 2.5143 32 1 9.2150 -1.0991 3.3843 33 1 5.0899 -1.4492 0.0274 34 1 3.6363 -2.4767 0.0277 35 1 3.8278 -1.2562 -2.1119 36 1 3.8756 0.2927 -1.2353 37 1 1.8049 0.9682 -2.4657 38 1 1.8677 -0.6066 -3.2926 39 1 0.4000 -0.1233 -2.4085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334448262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:03 Heat of formation + Delta-G solvation = 4.020152 kcal Electronic energy + Delta-G solvation = -16525.289038 eV Core-core repulsion = 14081.612820 eV Total energy + Delta-G solvation = -2443.676218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50364 -35.80704 -33.45679 -32.81211 -30.13872 -28.57993 -27.44237 -25.72132 -24.37254 -22.16377 -21.48709 -19.85016 -19.25381 -16.46806 -15.75498 -15.30402 -15.06537 -14.57350 -14.42974 -13.81397 -13.56422 -13.09542 -12.94968 -12.53223 -12.24983 -12.06835 -11.75666 -11.53345 -11.51645 -11.32455 -11.06704 -10.89641 -10.71819 -10.59546 -10.45617 -10.11864 -9.66650 -9.27330 -9.08251 -8.30023 -8.22874 -7.64361 -5.96970 -3.99196 3.35140 3.39406 3.41818 3.99881 4.36607 4.54593 4.90854 5.12285 5.20515 5.38777 5.39503 5.44734 5.55222 5.60057 5.65191 5.66882 5.74515 5.81699 5.83269 6.01131 6.01876 6.13410 6.22798 6.35709 6.37311 6.43925 6.52997 6.61360 7.04287 7.14389 7.18831 7.58657 7.64420 7.84828 7.94307 8.12193 8.47056 9.07943 9.64218 11.14432 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.047270 B = 0.005930 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.197011 B = 4720.514973 C = 5147.464804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.047 0.953 4 C 0.087 3.913 5 H 0.041 0.959 6 C -0.148 4.148 7 N -0.537 5.537 8 C 0.059 3.941 9 C 0.029 3.971 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.057 3.943 19 C 0.058 3.942 20 N -0.543 5.543 21 C 0.023 3.977 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 2.262 -8.127 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 H 0.065 0.935 4 C -0.022 4.022 5 H 0.059 0.941 6 C -0.206 4.206 7 N -0.262 5.262 8 C -0.067 4.067 9 C -0.008 4.008 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.071 4.071 19 C -0.070 4.070 20 N -0.268 5.268 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.727 2.307 -8.155 16.132 hybrid contribution 0.531 -0.442 0.783 1.044 sum -13.196 1.865 -7.372 15.230 Atomic orbital electron populations 1.21949 0.94599 1.02348 1.01579 1.21681 0.94599 0.96033 0.89697 0.93494 1.21592 0.89079 0.97717 0.93800 0.94133 1.21959 0.99935 1.01324 0.97358 1.62268 1.06131 1.54494 1.03274 1.22412 0.99557 0.95001 0.89740 1.19080 0.87499 0.97662 0.96581 1.21163 0.92629 1.35541 1.06699 0.92892 1.24986 0.97119 0.95461 0.96692 1.69964 1.03788 1.43206 1.36366 0.86665 0.77787 0.79830 0.83744 1.20304 1.21291 1.20249 1.22151 1.00978 0.95115 0.88863 1.22198 0.86512 0.99874 0.98387 1.62179 1.09052 1.53552 1.01998 1.22386 1.00618 0.96906 0.92592 0.92023 0.91815 0.92683 0.92534 0.91723 0.91962 0.91477 0.96358 0.96593 0.95850 0.92980 0.89140 0.94788 0.90737 0.94101 0.95902 0.91717 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.54 37.16 0.32 -1.30 16 2 C 0.09 1.24 2.07 -67.66 -0.14 1.10 16 3 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.09 1.39 2.07 -67.66 -0.14 1.25 16 5 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -2.12 8.58 37.16 0.32 -1.80 16 7 N -0.54 -10.20 4.53 -226.50 -1.03 -11.23 16 8 C 0.06 1.29 4.66 -3.82 -0.02 1.27 16 9 C 0.03 0.77 4.91 -27.88 -0.14 0.63 16 10 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.06 1.03 5.41 -3.77 -0.02 1.01 16 19 C 0.06 0.88 5.62 -3.77 -0.02 0.86 16 20 N -0.54 -7.60 4.78 -234.73 -1.12 -8.73 16 21 C 0.02 0.26 9.13 60.07 0.55 0.81 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.64 6.48 -51.93 -0.34 0.30 16 24 H 0.05 0.54 6.36 -51.93 -0.33 0.20 16 25 H 0.06 0.66 6.47 -51.93 -0.34 0.32 16 26 H 0.06 0.98 6.15 -51.93 -0.32 0.66 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.42 5.73 -51.92 -0.30 1.13 16 29 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.02 0.44 6.49 -51.93 -0.34 0.10 16 31 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.07 0.67 6.25 -51.93 -0.32 0.35 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -30.20 294.86 -8.49 -38.69 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.80 Total: -3.77 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.30 Total: -9.83 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.41 Total: -46.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.20 -8.49 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334448262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.713 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds