Wall clock time and date at job start Sun Mar 29 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 N 1.46902 * 109.47294 * 239.99772 * 2 1 3 5 5 C 1.46855 * 110.99662 * 55.79137 * 4 2 1 6 6 C 1.53041 * 109.52192 * 185.84168 * 5 4 2 7 7 C 1.53115 * 109.27600 * 300.82139 * 6 5 4 8 8 N 1.46500 * 109.52092 * 177.56230 * 7 6 5 9 9 C 1.46495 * 120.00120 * 300.31331 * 8 7 6 10 10 C 1.36943 * 120.00143 * 120.31494 * 8 7 6 11 11 H 1.08003 * 119.99800 * 23.25455 * 10 8 7 12 12 C 1.38809 * 119.99777 * 203.25283 * 10 8 7 13 13 N 1.31615 * 120.00098 * 11.66611 * 12 10 8 14 14 Si 1.86796 * 119.99866 * 191.66322 * 12 10 8 15 15 H 1.48503 * 109.47150 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47563 * 120.00218 * 14 12 10 17 17 H 1.48508 * 109.47373 * 240.00248 * 14 12 10 18 18 C 1.53115 * 109.16481 * 57.65598 * 7 6 5 19 19 C 1.46846 * 111.00323 * 179.97438 * 4 2 1 20 20 H 1.08995 * 109.47030 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47042 * 59.99955 * 1 2 3 22 22 H 1.08996 * 109.46671 * 300.00184 * 1 2 3 23 23 H 1.09001 * 109.47516 * 120.00286 * 2 1 3 24 24 H 1.08996 * 109.47456 * 60.00296 * 3 2 1 25 25 H 1.08998 * 109.47142 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47157 * 299.99975 * 3 2 1 27 27 H 1.08998 * 109.46072 * 305.85787 * 5 4 2 28 28 H 1.08999 * 109.46249 * 65.82140 * 5 4 2 29 29 H 1.09000 * 109.50072 * 180.87686 * 6 5 4 30 30 H 1.08997 * 109.49978 * 60.75938 * 6 5 4 31 31 H 1.09004 * 109.57696 * 297.71404 * 7 6 5 32 32 H 1.09001 * 109.47494 * 94.00916 * 9 8 7 33 33 H 1.08996 * 109.47921 * 214.01372 * 9 8 7 34 34 H 1.09008 * 109.46788 * 334.00938 * 9 8 7 35 35 H 0.97005 * 120.00136 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.50523 * 182.40935 * 18 7 6 37 37 H 1.08994 * 109.53818 * 62.30210 * 18 7 6 38 38 H 1.08995 * 109.46435 * 294.18530 * 19 4 2 39 39 H 1.09007 * 109.45660 * 54.15780 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.4684 -0.0872 -2.4185 6 6 1.8811 -0.9197 -3.6346 7 6 3.4092 -0.9737 -3.7151 8 7 3.8103 -1.8175 -4.8436 9 6 3.3987 -3.2226 -4.8903 10 6 4.5702 -1.2927 -5.8548 11 1 5.1806 -0.4201 -5.6745 12 6 4.5558 -1.8822 -7.1114 13 7 3.6514 -2.7936 -7.4004 14 14 5.8201 -1.3819 -8.3922 15 1 6.7186 -0.3457 -7.8226 16 1 6.6205 -2.5686 -8.7878 17 1 5.1261 -0.8330 -9.5849 18 6 3.9606 -1.5633 -2.4141 19 6 3.4877 -0.7116 -1.2337 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 0.5139 0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6768 1.9564 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 0.3810 -0.0586 -2.3500 28 1 1.8521 0.9274 -2.5257 29 1 1.4848 -0.4615 -4.5407 30 1 1.4860 -1.9306 -3.5345 31 1 3.8034 0.0329 -3.8548 32 1 2.4781 -3.3126 -5.4670 33 1 4.1823 -3.8154 -5.3621 34 1 3.2293 -3.5855 -3.8765 35 1 3.6411 -3.2053 -8.2787 36 1 5.0500 -1.5648 -2.4482 37 1 3.5988 -2.5844 -2.2945 38 1 3.8616 0.3059 -1.3466 39 1 3.8671 -1.1369 -0.3045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334617087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:00 Heat of formation + Delta-G solvation = 2.067562 kcal Electronic energy + Delta-G solvation = -16749.760185 eV Core-core repulsion = 14305.999297 eV Total energy + Delta-G solvation = -2443.760888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50403 -37.76246 -35.04478 -32.74479 -31.79042 -30.10974 -28.07809 -28.00633 -25.74516 -23.99643 -23.19403 -21.04876 -19.83047 -18.74271 -17.31927 -16.78707 -15.92929 -15.67761 -15.50010 -15.22554 -14.77376 -14.52657 -14.30534 -13.95764 -13.50145 -13.25448 -12.97485 -12.87259 -12.63083 -12.55961 -12.42803 -12.21309 -12.14775 -12.02306 -11.90784 -11.68405 -11.57520 -11.22562 -11.03668 -10.61134 -9.11169 -8.73379 -7.80899 -5.29437 1.45316 1.46054 1.56872 2.50866 3.02409 3.31748 3.64768 3.97518 4.01920 4.18641 4.20413 4.33646 4.43435 4.48415 4.53421 4.70403 4.73538 4.79025 4.81030 4.89155 4.94705 4.98539 5.01094 5.09726 5.16531 5.26466 5.28807 5.38792 5.43699 5.50293 5.60083 5.65065 5.73323 6.24908 6.31964 6.37161 7.17239 7.90733 8.35825 9.22439 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.006290 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.902332 B = 4450.632101 C = 4553.304567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.541 5.541 5 C 0.067 3.933 6 C -0.117 4.117 7 C 0.173 3.827 8 N -0.613 5.613 9 C 0.185 3.815 10 C -0.262 4.262 11 H 0.068 0.932 12 C -0.055 4.055 13 N -0.941 5.941 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.291 1.291 17 H -0.292 1.292 18 C -0.118 4.118 19 C 0.068 3.932 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.046 0.954 32 H -0.001 1.001 33 H 0.012 0.988 34 H 0.027 0.973 35 H 0.247 0.753 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 6.503 15.534 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.266 5.266 5 C -0.062 4.062 6 C -0.157 4.157 7 C 0.067 3.933 8 N -0.336 5.336 9 C 0.040 3.960 10 C -0.392 4.392 11 H 0.085 0.915 12 C -0.250 4.250 13 N -0.588 5.588 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.217 1.217 17 H -0.219 1.219 18 C -0.158 4.158 19 C -0.060 4.060 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.212 5.928 15.412 17.042 hybrid contribution 0.845 0.714 -1.368 1.760 sum -3.367 6.642 14.044 15.896 Atomic orbital electron populations 1.21892 0.93716 1.02252 1.02284 1.21798 0.96278 0.92593 0.92723 1.22443 1.01366 0.97807 1.02567 1.62177 1.08012 1.54113 1.02276 1.22021 1.00100 0.95138 0.88898 1.21952 0.97511 0.99808 0.96452 1.20555 0.92745 0.93033 0.87011 1.44199 1.60701 1.06819 1.21848 1.20388 0.96906 0.84154 0.94558 1.19604 1.17984 1.11981 0.89624 0.91473 1.25805 1.00192 1.00096 0.98894 1.70252 1.35814 1.31659 1.21060 0.85168 0.78685 0.77473 0.78909 1.19102 1.21747 1.21883 1.21948 0.99530 0.99844 0.94476 1.21985 0.87482 0.98220 0.98317 0.92484 0.92828 0.90545 0.89317 0.90583 0.92793 0.93243 0.89678 0.94932 0.94152 0.93205 0.93616 0.98281 0.96908 0.95487 0.94361 0.92564 0.92562 0.94579 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.84 71.98 0.64 -1.96 16 2 C 0.07 1.51 3.03 44.92 0.14 1.64 16 3 C -0.18 -3.39 8.51 71.98 0.61 -2.78 16 4 N -0.54 -14.57 4.68 -871.06 -4.08 -18.65 16 5 C 0.07 1.97 4.67 86.33 0.40 2.37 16 6 C -0.12 -4.53 5.41 30.65 0.17 -4.37 16 7 C 0.17 7.33 2.66 45.07 0.12 7.45 16 8 N -0.61 -32.09 2.82 -702.34 -1.98 -34.06 16 9 C 0.18 9.69 7.95 127.77 1.02 10.70 16 10 C -0.26 -14.91 9.59 84.03 0.81 -14.10 16 11 H 0.07 3.73 7.82 -2.91 -0.02 3.70 16 12 C -0.06 -3.19 5.12 84.86 0.43 -2.76 16 13 N -0.94 -57.56 10.66 21.65 0.23 -57.33 16 14 Si 0.97 46.26 29.57 68.60 2.03 48.29 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 17 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 18 C -0.12 -4.20 5.41 30.65 0.17 -4.03 16 19 C 0.07 1.89 4.89 86.33 0.42 2.31 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.01 6.22 -2.39 -0.01 1.00 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.04 6.53 -2.39 -0.02 1.03 16 26 H 0.05 1.00 6.63 -2.39 -0.02 0.99 16 27 H 0.09 2.27 5.90 -2.39 -0.01 2.26 16 28 H 0.03 0.95 6.71 -2.39 -0.02 0.93 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 2.04 7.59 -2.39 -0.02 2.03 16 31 H 0.05 1.99 7.87 -2.38 -0.02 1.97 16 32 H 0.00 -0.06 7.41 -2.39 -0.02 -0.08 16 33 H 0.01 0.70 7.25 -2.39 -0.02 0.68 16 34 H 0.03 1.24 6.40 -2.38 -0.02 1.22 16 35 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.10 6.58 -2.39 -0.02 2.08 16 38 H 0.04 0.98 6.63 -2.39 -0.02 0.96 16 39 H 0.09 2.05 8.12 -2.38 -0.02 2.03 16 Total: -1.00 -63.78 289.94 2.12 -61.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.00 Total: 5.61 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 4.92 Total: -5.52 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -5.83 Total: -110.04 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -63.78 2.12 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334617087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.728 kcal (2) G-P(sol) polarization free energy of solvation -63.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds