Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09010 * 109.47512 * 54.65505 * 3 2 1 5 5 C 1.50701 * 109.47321 * 174.65225 * 3 2 1 6 6 H 1.07995 * 119.99815 * 120.00004 * 5 3 2 7 7 C 1.37874 * 120.00222 * 300.00331 * 5 3 2 8 8 N 1.31519 * 119.99943 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00115 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47376 * 59.99836 * 9 7 5 11 11 H 1.48501 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47223 * 299.99570 * 9 7 5 13 13 N 1.46901 * 109.47145 * 294.65675 * 3 2 1 14 14 C 1.46900 * 111.00135 * 154.88494 * 13 3 2 15 15 H 1.09001 * 110.64293 * 36.85522 * 14 13 3 16 16 C 1.54597 * 110.72404 * 273.70264 * 14 13 3 17 17 C 1.53991 * 105.13858 * 219.68407 * 16 14 13 18 18 N 1.47909 * 107.06138 * 358.77713 * 17 16 14 19 19 C 1.46897 * 111.00327 * 145.84131 * 18 17 16 20 20 C 1.52998 * 109.47129 * 183.94838 * 19 18 17 21 21 C 1.48730 * 105.93841 * 25.19990 * 18 17 16 22 22 H 1.09000 * 109.46564 * 175.70995 * 1 2 3 23 23 H 1.08995 * 109.47009 * 295.71246 * 1 2 3 24 24 H 1.09005 * 109.46804 * 55.71394 * 1 2 3 25 25 H 1.09000 * 109.47195 * 119.99734 * 2 1 3 26 26 H 1.08996 * 109.47841 * 239.99776 * 2 1 3 27 27 H 0.96999 * 120.00313 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99725 * 278.83770 * 13 3 2 29 29 H 1.08999 * 110.30869 * 338.59980 * 16 14 13 30 30 H 1.09001 * 110.30728 * 100.66896 * 16 14 13 31 31 H 1.08997 * 109.91872 * 118.12679 * 17 16 14 32 32 H 1.08997 * 109.91921 * 239.22649 * 17 16 14 33 33 H 1.08999 * 109.47076 * 303.94836 * 19 18 17 34 34 H 1.09002 * 109.46915 * 63.94958 * 19 18 17 35 35 H 1.08998 * 109.46969 * 305.56268 * 20 19 18 36 36 H 1.09002 * 109.47022 * 65.56053 * 20 19 18 37 37 H 1.09000 * 109.46699 * 185.56154 * 20 19 18 38 38 H 1.09005 * 110.83397 * 202.58114 * 21 18 17 39 39 H 1.08999 * 110.58886 * 79.39274 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9833 0.8383 5 6 3.5412 1.4446 0.1324 6 1 4.1508 1.8877 -0.6411 7 6 4.1363 0.8810 1.2410 8 7 3.3938 0.3418 2.1833 9 14 5.9970 0.8830 1.4048 10 1 6.4925 2.2829 1.4045 11 1 6.3827 0.2222 2.6776 12 1 6.5953 0.1459 0.2629 13 7 1.6585 2.0968 -1.2587 14 6 1.5760 3.5538 -1.0908 15 1 2.3542 3.9073 -0.4144 16 6 0.1770 3.9672 -0.5790 17 6 -0.1661 5.2583 -1.3450 18 7 0.9900 5.5675 -2.2141 19 6 0.5518 6.1813 -3.4747 20 6 1.7624 6.3958 -4.3854 21 6 1.6738 4.2700 -2.4612 22 1 -0.3632 -1.0248 -0.0769 23 1 -0.3633 0.4458 0.9259 24 1 -0.3633 0.5789 -0.8491 25 1 1.8934 -0.5138 0.8900 26 1 1.8935 -0.5138 -0.8899 27 1 3.8124 -0.0544 2.9634 28 1 2.2977 1.8539 -2.0007 29 1 -0.5528 3.1892 -0.8027 30 1 0.2080 4.1588 0.4936 31 1 -1.0570 5.1033 -1.9535 32 1 -0.3343 6.0738 -0.6416 33 1 -0.1632 5.5241 -3.9695 34 1 0.0792 7.1412 -3.2663 35 1 2.5200 6.9710 -3.8532 36 1 2.1759 5.4294 -4.6737 37 1 1.4536 6.9399 -5.2780 38 1 2.7159 4.4278 -2.7393 39 1 1.1511 3.7017 -3.2305 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393223924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = -26.137528 kcal Electronic energy + Delta-G solvation = -16449.173820 eV Core-core repulsion = 14004.189867 eV Total energy + Delta-G solvation = -2444.983953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14167 -37.60447 -34.77255 -33.51087 -32.19145 -29.40620 -29.22752 -27.39677 -24.62512 -23.59591 -21.90964 -21.24986 -20.91442 -18.61342 -17.13231 -16.97920 -16.66685 -15.73632 -15.23950 -15.02195 -14.80007 -14.56246 -14.12171 -13.84941 -13.33061 -13.28790 -13.11923 -13.00665 -12.67018 -12.53583 -12.34847 -12.22234 -12.15080 -11.83064 -11.76627 -11.54706 -11.48156 -11.29417 -10.96099 -10.45009 -9.35134 -9.09211 -8.05619 -6.27613 1.38910 1.39183 1.46824 2.40001 2.98922 3.14805 3.73499 3.78214 3.89556 4.22146 4.29071 4.39852 4.42365 4.61522 4.63250 4.68664 4.73006 4.77415 4.94416 4.96448 4.97790 5.01827 5.12534 5.19082 5.22454 5.27881 5.34687 5.43455 5.53652 5.64926 5.78085 5.91499 6.12090 6.15168 6.22771 6.40601 6.82614 7.01704 7.43804 8.90986 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.007412 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.285449 B = 3776.746435 C = 4420.166448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.002 1.002 5 C -0.561 4.561 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.669 5.669 14 C 0.086 3.914 15 H 0.021 0.979 16 C -0.116 4.116 17 C 0.047 3.953 18 N -0.532 5.532 19 C 0.042 3.958 20 C -0.147 4.147 21 C 0.052 3.948 22 H 0.045 0.955 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 8.426 -9.813 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.016 0.984 5 C -0.600 4.600 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.299 5.299 14 C -0.025 4.025 15 H 0.039 0.961 16 C -0.155 4.155 17 C -0.081 4.081 18 N -0.257 5.257 19 C -0.086 4.086 20 C -0.205 4.205 21 C -0.076 4.076 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.243 8.624 -9.299 14.136 hybrid contribution 1.567 -0.548 0.299 1.687 sum -4.677 8.076 -9.000 12.964 Atomic orbital electron populations 1.21570 0.96410 0.99915 1.00353 1.21359 0.94435 0.98354 1.00009 1.18882 0.91428 0.91442 0.86534 0.98398 1.22165 0.94203 1.38136 1.05527 0.93289 1.25654 1.02045 0.94778 0.95512 1.69999 1.36419 1.38868 1.09684 0.85757 0.81126 0.78142 0.77478 1.20225 1.20828 1.19586 1.60929 1.54448 1.06065 1.08418 1.22216 0.96001 0.88500 0.95768 0.96054 1.22362 0.96941 0.97054 0.99161 1.22782 0.92422 0.96761 0.96143 1.64767 1.23458 1.22326 1.15152 1.22328 0.97417 0.99726 0.89111 1.21782 0.97737 1.01807 0.99131 1.23168 0.99399 0.89307 0.95769 0.93592 0.95216 0.92249 0.92170 0.95267 0.92889 0.85386 0.90982 0.93107 0.92496 0.89941 0.94442 0.89688 0.92618 0.93280 0.90366 0.90773 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.97 5.45 30.60 0.17 -4.80 16 3 C 0.23 11.33 1.84 44.17 0.08 11.41 16 4 H 0.00 -0.11 7.74 -2.38 -0.02 -0.13 16 5 C -0.56 -30.73 8.30 25.60 0.21 -30.52 16 6 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -52.56 11.29 21.45 0.24 -52.32 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.67 -27.77 5.45 -467.13 -2.54 -30.32 16 14 C 0.09 3.29 3.13 46.12 0.14 3.44 16 15 H 0.02 0.97 7.75 -2.39 -0.02 0.96 16 16 C -0.12 -3.93 6.49 31.47 0.20 -3.73 16 17 C 0.05 1.27 6.70 86.44 0.58 1.85 16 18 N -0.53 -14.83 5.35 -882.47 -4.72 -19.54 16 19 C 0.04 0.90 5.55 86.30 0.48 1.38 16 20 C -0.15 -2.84 9.59 71.98 0.69 -2.15 16 21 C 0.05 1.60 4.83 86.61 0.42 2.02 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 2.26 7.65 -2.38 -0.02 2.24 16 25 H 0.06 3.29 5.95 -2.39 -0.01 3.27 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.33 13.43 8.18 -89.69 -0.73 12.70 16 29 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.35 7.67 -2.39 -0.02 1.33 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 0.78 7.98 -2.39 -0.02 0.76 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.00 7.22 -2.39 -0.02 0.99 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 2.30 7.80 -2.38 -0.02 2.28 16 39 H 0.06 1.64 8.01 -2.39 -0.02 1.62 16 Total: -1.00 -58.44 305.16 -0.60 -59.04 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.26 Total: 21.16 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.13 Total: -23.89 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -7.02 Total: -102.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.44 -0.60 -59.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393223924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.903 kcal (2) G-P(sol) polarization free energy of solvation -58.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds