Wall clock time and date at job start Sun Mar 29 2020 21:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99527 * 2 1 4 4 C 1.46899 * 111.00403 * 123.95764 * 2 1 3 5 5 H 1.09007 * 110.43160 * 301.74907 * 4 2 1 6 6 C 1.54260 * 110.48797 * 179.06740 * 4 2 1 7 7 C 1.53878 * 106.59849 * 217.70905 * 6 4 2 8 8 C 1.54263 * 106.59719 * 359.97438 * 7 6 4 9 9 C 1.54885 * 110.48792 * 64.28736 * 4 2 1 10 10 H 1.09008 * 110.75351 * 38.12762 * 9 4 2 11 11 N 1.46495 * 110.76047 * 274.93920 * 9 4 2 12 12 C 1.34780 * 120.00277 * 154.99646 * 11 9 4 13 13 O 1.21692 * 119.99738 * 0.02562 * 12 11 9 14 14 C 1.46377 * 120.00088 * 179.72387 * 12 11 9 15 15 H 1.07992 * 120.00136 * 0.28360 * 14 12 11 16 16 C 1.40049 * 119.99426 * 180.27781 * 14 12 11 17 17 N 1.30667 * 120.00579 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99461 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46943 * 119.99884 * 18 16 14 21 21 H 1.48497 * 109.47085 * 239.99833 * 18 16 14 22 22 H 1.08997 * 109.47325 * 296.03900 * 1 2 3 23 23 H 1.08999 * 109.47480 * 56.04669 * 1 2 3 24 24 H 1.09002 * 109.47200 * 176.04572 * 1 2 3 25 25 H 1.09005 * 109.46473 * 189.58342 * 3 2 1 26 26 H 1.08995 * 109.47785 * 309.57933 * 3 2 1 27 27 H 1.09001 * 109.46965 * 69.58703 * 3 2 1 28 28 H 1.09000 * 110.03463 * 336.99876 * 6 4 2 29 29 H 1.09003 * 110.03438 * 98.37480 * 6 4 2 30 30 H 1.08997 * 110.03198 * 119.28852 * 7 6 4 31 31 H 1.09007 * 110.03103 * 240.71333 * 7 6 4 32 32 H 1.08994 * 110.48589 * 264.93259 * 8 7 6 33 33 H 1.08997 * 110.48535 * 142.28737 * 8 7 6 34 34 H 0.97004 * 119.99937 * 335.00154 * 11 9 4 35 35 H 0.97000 * 120.00342 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6301 -0.3516 2.0772 6 6 3.5379 -0.7778 1.1129 7 6 3.9742 -2.1783 1.5778 8 6 2.6818 -2.9684 1.8693 9 6 1.6022 -2.2590 1.0142 10 1 1.6505 -2.5867 -0.0243 11 7 0.2661 -2.4914 1.5682 12 6 -0.4691 -3.5363 1.1388 13 8 -0.0229 -4.2868 0.2912 14 6 -1.8017 -3.7720 1.6968 15 1 -2.1977 -3.1061 2.4491 16 6 -2.5632 -4.8610 1.2547 17 7 -2.0845 -5.6664 0.3439 18 14 -4.2641 -5.1614 1.9662 19 1 -4.5720 -4.1135 2.9724 20 1 -5.2721 -5.1123 0.8768 21 1 -4.3007 -6.4969 2.6145 22 1 -0.3634 0.4511 0.9233 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0716 1.3475 -0.1711 26 1 1.5143 1.9454 -0.7920 27 1 1.7908 1.8391 0.9631 28 1 3.8966 -0.5918 0.1006 29 1 3.9280 -0.0197 1.7921 30 1 4.5447 -2.6719 0.7911 31 1 4.5761 -2.1004 2.4833 32 1 2.4297 -2.9101 2.9281 33 1 2.7917 -4.0074 1.5590 34 1 -0.0895 -1.8933 2.2441 35 1 -2.6118 -6.4209 0.0380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597532870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:38 Heat of formation + Delta-G solvation = -66.919835 kcal Electronic energy + Delta-G solvation = -16345.266248 eV Core-core repulsion = 13762.680747 eV Total energy + Delta-G solvation = -2582.585501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56661 -38.61598 -36.24686 -34.72796 -33.89574 -29.52615 -28.99324 -28.17265 -27.30166 -24.00832 -22.16093 -21.17742 -20.73686 -19.04070 -17.57573 -17.16762 -16.92307 -15.89449 -15.57849 -15.45045 -14.86447 -14.63687 -14.46922 -13.99058 -13.51856 -13.44003 -13.17160 -12.87997 -12.75569 -12.61863 -12.53247 -12.32834 -12.01079 -11.97463 -11.83333 -11.61435 -11.31263 -10.94156 -9.82427 -9.38235 -9.21829 -8.27732 -6.84145 1.39093 1.39347 1.56924 2.24313 2.49324 2.96428 3.17409 3.56402 3.65310 3.91868 4.11614 4.28953 4.42749 4.45541 4.52934 4.56693 4.62240 4.72521 4.77522 4.81895 5.03821 5.06730 5.14354 5.14889 5.24540 5.26541 5.32578 5.44007 5.89755 6.10305 6.23143 6.25193 6.36374 6.88175 7.58138 8.53124 8.70615 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.007459 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.504409 B = 3752.965631 C = 4202.547428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.555 5.555 3 C 0.025 3.975 4 C 0.081 3.919 5 H 0.054 0.946 6 C -0.105 4.105 7 C -0.110 4.110 8 C -0.134 4.134 9 C 0.155 3.845 10 H 0.047 0.953 11 N -0.744 5.744 12 C 0.544 3.456 13 O -0.631 6.631 14 C -0.574 4.574 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.822 5.822 18 Si 0.996 3.004 19 H -0.247 1.247 20 H -0.269 1.269 21 H -0.269 1.269 22 H 0.031 0.969 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.389 0.611 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 12.853 4.400 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.122 4.122 4 C -0.029 4.029 5 H 0.072 0.928 6 C -0.143 4.143 7 C -0.148 4.148 8 C -0.173 4.173 9 C 0.049 3.951 10 H 0.066 0.934 11 N -0.396 5.396 12 C 0.348 3.652 13 O -0.519 6.519 14 C -0.610 4.610 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.816 3.184 19 H -0.170 1.170 20 H -0.194 1.194 21 H -0.194 1.194 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.222 0.778 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.484 11.961 3.233 14.475 hybrid contribution -1.298 -0.018 0.955 1.611 sum 6.186 11.942 4.188 14.086 Atomic orbital electron populations 1.22351 0.87548 1.01732 1.00446 1.62023 1.07935 1.15078 1.42931 1.22459 1.01648 0.87381 1.00744 1.22731 0.96644 0.91820 0.91657 0.92839 1.22112 0.91872 0.97539 1.02756 1.22009 0.95840 0.94901 1.02075 1.22674 0.96207 0.98615 0.99853 1.21602 0.82825 0.94210 0.96458 0.93446 1.45827 1.16803 1.31605 1.45401 1.18514 0.86096 0.79315 0.81280 1.90557 1.74367 1.49461 1.37470 1.21447 1.00581 1.13660 1.25359 0.89736 1.26951 1.04043 0.94062 0.93559 1.70201 1.38360 1.12207 1.24441 0.85001 0.75505 0.79125 0.78817 1.17039 1.19380 1.19376 0.95078 0.90950 0.93545 0.89957 0.90971 0.95025 0.90460 0.89088 0.91655 0.89378 0.91346 0.94581 0.77776 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.07 127.69 1.16 2.06 16 2 N -0.56 -16.69 4.85 -916.94 -4.45 -21.13 16 3 C 0.03 0.54 9.20 127.69 1.17 1.71 16 4 C 0.08 2.41 2.24 45.99 0.10 2.51 16 5 H 0.05 1.52 8.02 -2.38 -0.02 1.50 16 6 C -0.10 -2.44 5.35 31.32 0.17 -2.27 16 7 C -0.11 -2.79 6.80 31.32 0.21 -2.58 16 8 C -0.13 -4.76 6.51 31.68 0.21 -4.55 16 9 C 0.16 6.28 2.30 46.29 0.11 6.39 16 10 H 0.05 2.36 7.55 -2.38 -0.02 2.35 16 11 N -0.74 -34.10 3.46 -440.66 -1.52 -35.62 16 12 C 0.54 32.07 7.62 86.36 0.66 32.72 16 13 O -0.63 -43.39 14.66 -4.32 -0.06 -43.46 16 14 C -0.57 -33.01 9.54 24.83 0.24 -32.77 16 15 H 0.08 4.38 7.85 -2.91 -0.02 4.35 16 16 C 0.03 1.63 5.50 85.31 0.47 2.10 16 17 N -0.82 -51.37 11.83 21.84 0.26 -51.11 16 18 Si 1.00 41.64 29.56 68.60 2.03 43.67 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 24 H 0.05 1.94 6.10 -2.39 -0.01 1.93 16 25 H 0.08 1.50 6.93 -2.38 -0.02 1.49 16 26 H 0.07 1.41 8.02 -2.39 -0.02 1.39 16 27 H 0.03 0.61 8.13 -2.39 -0.02 0.59 16 28 H 0.08 1.79 7.44 -2.39 -0.02 1.78 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.39 15.67 8.55 -92.71 -0.79 14.88 16 35 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 Total: -1.00 -75.82 283.57 1.02 -74.79 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.28 Total: 27.54 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.49 Total: 5.32 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -5.71 Total: -107.86 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.06 Total: -43.46 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.82 1.02 -74.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597532870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.873 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds