Wall clock time and date at job start Sun Mar 29 2020 22:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 111.00101 * 2 1 4 4 C 1.50705 * 109.46979 * 293.95468 * 3 2 1 5 5 H 1.07997 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99769 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00216 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00071 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47378 * 270.00387 * 8 6 4 10 10 H 1.48508 * 109.46760 * 29.99856 * 8 6 4 11 11 H 1.48500 * 109.47314 * 149.99795 * 8 6 4 12 12 C 1.46902 * 111.00333 * 123.95514 * 2 1 3 13 13 C 1.52999 * 109.46826 * 66.04208 * 12 2 1 14 14 C 1.52999 * 109.47031 * 185.58983 * 13 12 2 15 15 H 1.08993 * 109.91235 * 54.09599 * 14 13 12 16 16 C 1.53995 * 109.91872 * 175.20229 * 14 13 12 17 17 C 1.54596 * 105.14112 * 120.57637 * 16 14 13 18 18 C 1.54934 * 102.92293 * 21.95655 * 17 16 14 19 19 N 1.47903 * 109.91451 * 292.79060 * 14 13 12 20 20 C 1.46897 * 111.00322 * 94.80469 * 19 14 13 21 21 H 1.08993 * 109.47093 * 59.99891 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46901 * 300.00291 * 1 2 3 24 24 H 1.08998 * 109.46702 * 173.95637 * 3 2 1 25 25 H 1.08992 * 109.46947 * 53.95756 * 3 2 1 26 26 H 0.97003 * 120.00240 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47569 * 186.04339 * 12 2 1 28 28 H 1.09004 * 109.46918 * 306.04905 * 12 2 1 29 29 H 1.09000 * 109.47491 * 305.58798 * 13 12 2 30 30 H 1.09001 * 109.47128 * 65.58686 * 13 12 2 31 31 H 1.09003 * 110.30760 * 239.49263 * 16 14 13 32 32 H 1.08994 * 110.31132 * 1.65963 * 16 14 13 33 33 H 1.08996 * 110.72605 * 140.31603 * 17 16 14 34 34 H 1.08998 * 110.72270 * 263.59874 * 17 16 14 35 35 H 1.09002 * 110.66942 * 81.01775 * 18 17 16 36 36 H 1.08995 * 110.66661 * 204.15216 * 18 17 16 37 37 H 1.08997 * 109.47132 * 65.90370 * 20 19 14 38 38 H 1.08998 * 109.47327 * 185.90643 * 20 19 14 39 39 H 1.09006 * 109.46994 * 305.90616 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0015 -0.6154 8 14 1.5840 4.1865 -3.1387 9 1 2.6607 3.9493 -4.1334 10 1 0.3059 3.6295 -3.6504 11 1 1.4322 5.6462 -2.9120 12 6 1.9956 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 6 2.0568 -3.0174 2.2192 15 1 1.6284 -2.5535 3.1076 16 6 1.5884 -4.4806 2.1137 17 6 2.8810 -5.3250 2.1925 18 6 3.8786 -4.3671 2.8908 19 7 3.5322 -3.0403 2.3197 20 6 4.0183 -1.9536 3.1803 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.0798 1.3443 0.1082 25 1 1.5612 1.9273 0.8309 26 1 2.9881 4.9174 -0.7777 27 1 3.0798 -0.6612 1.1756 28 1 1.5612 -0.3873 2.0628 29 1 0.5544 -2.3380 0.8328 30 1 2.1462 -2.6472 0.0988 31 1 0.9249 -4.7261 2.9429 32 1 1.0842 -4.6487 1.1622 33 1 2.7209 -6.2201 2.7935 34 1 3.2320 -5.5869 1.1944 35 1 3.7263 -4.3728 3.9701 36 1 4.9060 -4.6355 2.6447 37 1 3.6839 -2.1234 4.2037 38 1 5.1077 -1.9284 3.1535 39 1 3.6240 -1.0025 2.8222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611243718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:43 Heat of formation + Delta-G solvation = -18.462249 kcal Electronic energy + Delta-G solvation = -16123.494813 eV Core-core repulsion = 13678.843685 eV Total energy + Delta-G solvation = -2444.651128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28806 -38.23225 -34.86072 -33.11270 -32.88429 -29.40869 -28.30185 -26.84622 -26.21168 -23.69224 -22.13510 -21.46182 -20.98696 -18.50247 -17.12815 -16.81922 -16.46537 -16.26285 -15.78049 -15.14514 -15.02808 -14.54440 -14.08152 -13.96781 -13.72169 -13.38334 -13.08484 -12.98630 -12.75737 -12.65706 -12.47645 -12.26838 -12.21653 -12.04420 -11.91800 -11.68434 -11.41503 -11.32575 -11.07550 -10.62028 -9.35633 -9.01047 -8.20719 -6.31542 1.40975 1.43419 1.54352 2.40628 3.07723 3.11372 3.31496 3.73031 3.85078 4.08443 4.18660 4.26679 4.38113 4.45674 4.50045 4.53434 4.60808 4.68067 4.75522 4.77389 4.89218 4.98453 4.99883 5.04236 5.09561 5.14687 5.16209 5.25363 5.31165 5.34604 5.44530 5.65529 6.04371 6.05120 6.12811 6.34705 6.65858 6.84873 7.38458 8.90716 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048737 B = 0.005183 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.375117 B = 5401.085229 C = 5699.511590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.552 5.552 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.973 3.027 9 H -0.273 1.273 10 H -0.263 1.263 11 H -0.281 1.281 12 C 0.062 3.938 13 C -0.086 4.086 14 C 0.067 3.933 15 H 0.046 0.954 16 C -0.124 4.124 17 C -0.118 4.118 18 C 0.032 3.968 19 N -0.535 5.535 20 C 0.012 3.988 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.005 0.995 24 H -0.001 1.001 25 H -0.041 1.041 26 H 0.265 0.735 27 H 0.058 0.942 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -17.459 7.427 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.276 5.276 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.187 1.187 11 H -0.206 1.206 12 C -0.066 4.066 13 C -0.124 4.124 14 C -0.042 4.042 15 H 0.064 0.936 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.096 4.096 19 N -0.260 5.260 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.024 0.976 24 H 0.017 0.983 25 H -0.024 1.024 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.079 -17.434 6.531 18.648 hybrid contribution -0.448 1.470 1.031 1.851 sum -1.528 -15.964 7.562 17.731 Atomic orbital electron populations 1.22247 0.87659 1.01212 0.99677 1.62042 1.08235 1.15076 1.42221 1.19372 0.93389 0.84052 0.95010 1.21489 1.34946 0.97599 1.02301 0.91780 1.25967 0.94929 0.98005 1.00893 1.70098 1.39393 1.11941 1.36276 0.85331 0.79036 0.77201 0.78736 1.19801 1.18676 1.20643 1.22192 0.99205 0.94808 0.90414 1.21528 1.00698 0.92270 0.97879 1.22425 0.87992 0.96986 0.96839 0.93583 1.22453 0.98266 0.92191 1.03264 1.22472 0.93983 0.97711 1.01411 1.23331 1.00565 0.88446 0.97210 1.64639 1.10792 1.03290 1.47236 1.22623 1.01407 0.95001 0.94666 0.92506 0.89772 0.97607 0.98316 1.02382 0.92661 0.92316 0.97183 0.90816 0.91761 0.90147 0.90389 0.89059 0.91064 0.93204 0.89768 0.94612 0.90838 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.17 127.69 1.17 2.79 16 2 N -0.55 -25.51 4.75 -927.04 -4.41 -29.92 16 3 C 0.21 11.79 4.72 85.56 0.40 12.20 16 4 C -0.53 -31.01 8.52 25.60 0.22 -30.79 16 5 H 0.06 3.69 7.10 -2.91 -0.02 3.67 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.06 2.39 3.68 86.30 0.32 2.70 16 13 C -0.09 -2.58 4.72 30.59 0.14 -2.43 16 14 C 0.07 1.65 2.60 45.06 0.12 1.77 16 15 H 0.05 1.17 7.78 -2.39 -0.02 1.15 16 16 C -0.12 -2.29 6.57 31.47 0.21 -2.08 16 17 C -0.12 -1.95 7.06 31.80 0.22 -1.72 16 18 C 0.03 0.61 6.56 86.65 0.57 1.18 16 19 N -0.53 -13.81 5.06 -884.07 -4.47 -18.28 16 20 C 0.01 0.30 9.11 127.69 1.16 1.46 16 21 H 0.06 2.43 6.86 -2.39 -0.02 2.42 16 22 H 0.08 2.73 6.20 -2.39 -0.01 2.71 16 23 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.00 -0.08 7.93 -2.39 -0.02 -0.10 16 25 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 27 H 0.06 2.44 6.09 -2.39 -0.01 2.42 16 28 H 0.01 0.39 8.11 -2.38 -0.02 0.37 16 29 H 0.07 2.03 6.24 -2.39 -0.01 2.02 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.42 7.69 -2.39 -0.02 1.40 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.87 7.87 -2.39 -0.02 0.86 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 0.81 7.93 -2.39 -0.02 0.79 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.70 5.26 -2.38 -0.01 1.69 16 Total: -1.00 -66.63 300.59 -0.58 -67.21 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.99 Total: 5.91 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.00 Total: -14.48 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -8.59 Total: -105.96 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -66.63 -0.58 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611243718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.749 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds