Wall clock time and date at job start Sun Mar 29 2020 21:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99999 * 2 1 4 4 C 1.46906 * 111.00456 * 123.95877 * 2 1 3 5 5 C 1.52993 * 109.47189 * 170.00350 * 4 2 1 6 6 H 1.09002 * 110.89348 * 51.11267 * 5 4 2 7 7 C 1.55159 * 111.00392 * 175.00189 * 5 4 2 8 8 C 1.54321 * 102.94434 * 153.61040 * 7 5 4 9 9 N 1.47027 * 107.27333 * 337.80418 * 8 7 5 10 10 C 1.34773 * 125.64926 * 178.90194 * 9 8 7 11 11 O 1.21693 * 119.99830 * 180.02562 * 10 9 8 12 12 C 1.46368 * 120.00188 * 359.75149 * 10 9 8 13 13 H 1.08001 * 120.00155 * 0.27756 * 12 10 9 14 14 C 1.40047 * 120.00322 * 180.27118 * 12 10 9 15 15 N 1.30674 * 119.99675 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00219 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47294 * 90.00321 * 16 14 12 18 18 H 1.48499 * 109.47218 * 210.00181 * 16 14 12 19 19 H 1.48496 * 109.47166 * 330.00013 * 16 14 12 20 20 C 1.47430 * 108.69819 * 359.16900 * 9 8 7 21 21 H 1.08999 * 109.47127 * 296.04279 * 1 2 3 22 22 H 1.08997 * 109.47762 * 56.04695 * 1 2 3 23 23 H 1.09003 * 109.46911 * 176.04496 * 1 2 3 24 24 H 1.08997 * 109.47533 * 183.95211 * 3 2 1 25 25 H 1.08999 * 109.47249 * 303.96064 * 3 2 1 26 26 H 1.09002 * 109.47100 * 63.95594 * 3 2 1 27 27 H 1.08995 * 109.46884 * 49.99533 * 4 2 1 28 28 H 1.09000 * 109.46543 * 289.99950 * 4 2 1 29 29 H 1.08999 * 110.71900 * 35.24283 * 7 5 4 30 30 H 1.09004 * 110.86487 * 272.04352 * 7 5 4 31 31 H 1.08993 * 109.88315 * 218.38747 * 8 7 5 32 32 H 1.09003 * 110.01236 * 97.29054 * 8 7 5 33 33 H 0.96999 * 119.99862 * 179.97438 * 15 14 12 34 34 H 1.09006 * 110.36425 * 142.74028 * 20 9 8 35 35 H 1.08998 * 110.36592 * 265.06015 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9553 0.9702 6 1 3.9962 -0.0027 0.7731 7 6 4.1188 -1.6516 2.2132 8 6 5.3682 -2.3499 1.6361 9 7 5.1467 -2.5175 0.1923 10 6 6.0168 -3.0684 -0.6771 11 8 5.7265 -3.1556 -1.8557 12 6 7.3135 -3.5563 -0.2048 13 1 7.5712 -3.4790 0.8412 14 6 8.2199 -4.1236 -1.1091 15 7 7.9083 -4.2168 -2.3747 16 14 9.8744 -4.7469 -0.5062 17 1 9.7531 -6.1746 -0.1157 18 1 10.8789 -4.6144 -1.5919 19 1 10.3065 -3.9475 0.6682 20 6 3.8178 -1.9774 -0.1479 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9163 -0.8523 26 1 1.7043 1.8723 0.9233 27 1 1.5090 -1.7407 1.1755 28 1 1.7976 -0.2249 2.0627 29 1 3.4251 -2.3831 2.6277 30 1 4.4013 -0.9186 2.9689 31 1 5.4988 -3.3243 2.1066 32 1 6.2516 -1.7346 1.8066 33 1 8.5363 -4.6094 -3.0012 34 1 3.8469 -1.4817 -1.1183 35 1 3.0738 -2.7739 -0.1500 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688550942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:07 Heat of formation + Delta-G solvation = -32.740154 kcal Electronic energy + Delta-G solvation = -15935.380060 eV Core-core repulsion = 13354.276701 eV Total energy + Delta-G solvation = -2581.103359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83300 -37.08941 -35.36613 -32.44605 -31.08286 -28.64417 -27.60405 -26.90137 -25.20224 -22.74100 -21.34373 -19.83011 -18.98973 -16.68251 -15.87101 -15.45599 -15.16107 -14.93982 -14.37879 -13.98269 -13.49339 -13.11006 -12.73953 -12.42494 -12.22597 -11.92004 -11.82872 -11.66713 -11.45104 -11.16354 -11.01069 -10.78062 -10.65116 -10.40242 -10.23654 -10.14619 -10.08458 -8.80725 -8.30446 -7.55939 -7.07156 -6.14313 -4.58782 3.16878 3.23287 3.26962 3.95174 4.13133 4.60797 4.68057 4.96885 5.09128 5.12157 5.22786 5.31611 5.46546 5.50930 5.63812 5.68169 5.76025 5.81633 5.86884 5.94592 6.05701 6.09147 6.21821 6.49874 6.67363 6.75109 6.80048 7.04653 7.06971 7.47809 7.51750 8.17860 8.50019 9.07059 9.59158 10.64241 10.83748 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051177 B = 0.005987 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.991323 B = 4675.679025 C = 4988.059621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.022 3.978 4 C 0.069 3.931 5 C -0.101 4.101 6 H 0.080 0.920 7 C -0.127 4.127 8 C 0.122 3.878 9 N -0.648 5.648 10 C 0.571 3.429 11 O -0.576 6.576 12 C -0.539 4.539 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.133 3.867 21 H 0.021 0.979 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.066 0.934 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 7.677 9.232 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.126 4.126 4 C -0.059 4.059 5 C -0.121 4.121 6 H 0.098 0.902 7 C -0.166 4.166 8 C -0.003 4.003 9 N -0.389 5.389 10 C 0.377 3.623 11 O -0.459 6.459 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C 0.009 3.991 21 H 0.039 0.961 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.620 7.292 7.874 14.413 hybrid contribution 0.517 0.116 1.168 1.283 sum -9.103 7.408 9.043 14.816 Atomic orbital electron populations 1.22362 0.87590 1.02217 1.00045 1.61910 1.07443 1.13899 1.43627 1.22434 1.01572 0.88637 0.99928 1.22096 0.95095 0.98071 0.90625 1.22367 0.93845 0.99535 0.96305 0.90223 1.22673 0.97722 0.99303 0.96886 1.21535 0.95999 0.98855 0.83878 1.48741 1.17140 1.66015 1.06976 1.18013 0.83391 0.76958 0.83929 1.90610 1.78052 1.60599 1.16609 1.20907 0.99310 1.42038 0.95379 0.91349 1.25731 0.99218 0.93986 0.94346 1.70031 1.34389 1.32765 1.02589 0.86376 0.81728 0.79564 0.79114 1.19739 1.20450 1.18917 1.21638 0.86206 0.93941 0.97290 0.96084 0.91519 0.91368 0.90793 0.91598 0.96016 0.90590 0.94913 0.91375 0.91251 0.93047 0.93010 0.92128 0.91570 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.85 16 2 N -0.55 -7.07 4.96 -251.27 -1.25 -8.31 16 3 C 0.02 0.26 9.35 60.06 0.56 0.82 16 4 C 0.07 0.88 4.42 -3.82 -0.02 0.87 16 5 C -0.10 -1.55 2.97 -88.59 -0.26 -1.82 16 6 H 0.08 1.24 6.30 -51.93 -0.33 0.92 16 7 C -0.13 -1.83 6.42 -24.90 -0.16 -1.99 16 8 C 0.12 2.33 6.05 -3.06 -0.02 2.31 16 9 N -0.65 -15.69 3.33 -172.31 -0.57 -16.26 16 10 C 0.57 17.14 7.78 -12.99 -0.10 17.04 16 11 O -0.58 -19.61 15.28 5.20 0.08 -19.54 16 12 C -0.54 -15.75 9.06 -35.63 -0.32 -16.08 16 13 H 0.07 1.84 7.16 -52.49 -0.38 1.46 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.65 11.83 55.55 0.66 -22.99 16 16 Si 0.91 20.53 29.56 -169.99 -5.02 15.51 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 20 C 0.13 2.75 6.32 -2.64 -0.02 2.74 16 21 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 23 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 24 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 25 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 28 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 34 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 35 H 0.04 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -35.18 286.86 -7.27 -42.45 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.62 Total: -2.30 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 0.14 Total: 7.12 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -1.16 Total: -47.57 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.08 Total: -19.54 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.18 -7.27 -42.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688550942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.710 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds