Wall clock time and date at job start Sun Mar 29 2020 21:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99999 * 2 1 4 4 C 1.46906 * 111.00456 * 123.95877 * 2 1 3 5 5 C 1.52993 * 109.47189 * 170.00350 * 4 2 1 6 6 H 1.09002 * 110.89348 * 51.11267 * 5 4 2 7 7 C 1.55159 * 111.00392 * 175.00189 * 5 4 2 8 8 C 1.54321 * 102.94434 * 153.61040 * 7 5 4 9 9 N 1.47027 * 107.27333 * 337.80418 * 8 7 5 10 10 C 1.34773 * 125.64926 * 178.90194 * 9 8 7 11 11 O 1.21693 * 119.99830 * 180.02562 * 10 9 8 12 12 C 1.46368 * 120.00188 * 359.75149 * 10 9 8 13 13 H 1.08001 * 120.00155 * 0.27756 * 12 10 9 14 14 C 1.40047 * 120.00322 * 180.27118 * 12 10 9 15 15 N 1.30674 * 119.99675 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00219 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47294 * 90.00321 * 16 14 12 18 18 H 1.48499 * 109.47218 * 210.00181 * 16 14 12 19 19 H 1.48496 * 109.47166 * 330.00013 * 16 14 12 20 20 C 1.47430 * 108.69819 * 359.16900 * 9 8 7 21 21 H 1.08999 * 109.47127 * 296.04279 * 1 2 3 22 22 H 1.08997 * 109.47762 * 56.04695 * 1 2 3 23 23 H 1.09003 * 109.46911 * 176.04496 * 1 2 3 24 24 H 1.08997 * 109.47533 * 183.95211 * 3 2 1 25 25 H 1.08999 * 109.47249 * 303.96064 * 3 2 1 26 26 H 1.09002 * 109.47100 * 63.95594 * 3 2 1 27 27 H 1.08995 * 109.46884 * 49.99533 * 4 2 1 28 28 H 1.09000 * 109.46543 * 289.99950 * 4 2 1 29 29 H 1.08999 * 110.71900 * 35.24283 * 7 5 4 30 30 H 1.09004 * 110.86487 * 272.04352 * 7 5 4 31 31 H 1.08993 * 109.88315 * 218.38747 * 8 7 5 32 32 H 1.09003 * 110.01236 * 97.29054 * 8 7 5 33 33 H 0.96999 * 119.99862 * 179.97438 * 15 14 12 34 34 H 1.09006 * 110.36425 * 142.74028 * 20 9 8 35 35 H 1.08998 * 110.36592 * 265.06015 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9553 0.9702 6 1 3.9962 -0.0027 0.7731 7 6 4.1188 -1.6516 2.2132 8 6 5.3682 -2.3499 1.6361 9 7 5.1467 -2.5175 0.1923 10 6 6.0168 -3.0684 -0.6771 11 8 5.7265 -3.1556 -1.8557 12 6 7.3135 -3.5563 -0.2048 13 1 7.5712 -3.4790 0.8412 14 6 8.2199 -4.1236 -1.1091 15 7 7.9083 -4.2168 -2.3747 16 14 9.8744 -4.7469 -0.5062 17 1 9.7531 -6.1746 -0.1157 18 1 10.8789 -4.6144 -1.5919 19 1 10.3065 -3.9475 0.6682 20 6 3.8178 -1.9774 -0.1479 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9163 -0.8523 26 1 1.7043 1.8723 0.9233 27 1 1.5090 -1.7407 1.1755 28 1 1.7976 -0.2249 2.0627 29 1 3.4251 -2.3831 2.6277 30 1 4.4013 -0.9186 2.9689 31 1 5.4988 -3.3243 2.1066 32 1 6.2516 -1.7346 1.8066 33 1 8.5363 -4.6094 -3.0012 34 1 3.8469 -1.4817 -1.1183 35 1 3.0738 -2.7739 -0.1500 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688550942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:07 Heat of formation + Delta-G solvation = -59.432455 kcal Electronic energy + Delta-G solvation = -15936.537525 eV Core-core repulsion = 13354.276701 eV Total energy + Delta-G solvation = -2582.260824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38691 -38.59252 -37.10826 -34.66324 -32.69816 -30.12371 -28.81814 -28.45414 -26.76078 -24.26516 -22.55204 -21.32373 -20.76497 -18.59168 -17.63651 -17.17638 -16.20427 -16.10985 -16.03280 -15.41043 -15.21812 -14.68845 -14.25090 -13.72398 -13.55916 -13.36894 -13.16360 -12.99392 -12.85431 -12.69361 -12.60005 -12.48957 -12.28571 -12.02613 -11.80291 -11.70455 -11.38673 -10.94721 -9.89050 -9.20093 -9.07323 -8.30742 -6.87123 1.38556 1.40994 1.56494 2.23455 2.43722 2.89940 3.04232 3.56309 3.77503 3.83929 3.94237 4.28696 4.39624 4.44217 4.50067 4.56774 4.63478 4.74974 4.81201 4.83674 4.90877 5.01020 5.03430 5.04498 5.11264 5.24508 5.30108 5.43020 5.67566 6.03897 6.13785 6.18040 6.42892 6.84618 7.49359 8.44921 8.66101 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051177 B = 0.005987 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.991323 B = 4675.679025 C = 4988.059621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.576 5.576 3 C 0.024 3.976 4 C 0.077 3.923 5 C -0.085 4.085 6 H 0.077 0.923 7 C -0.109 4.109 8 C 0.112 3.888 9 N -0.658 5.658 10 C 0.548 3.452 11 O -0.636 6.636 12 C -0.565 4.565 13 H 0.087 0.913 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.001 2.999 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.247 1.247 20 C 0.131 3.869 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.275 0.725 34 H 0.028 0.972 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 8.227 12.194 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.300 5.300 3 C -0.124 4.124 4 C -0.051 4.051 5 C -0.105 4.105 6 H 0.095 0.905 7 C -0.147 4.147 8 C -0.012 4.012 9 N -0.396 5.396 10 C 0.354 3.646 11 O -0.524 6.524 12 C -0.602 4.602 13 H 0.105 0.895 14 C -0.189 4.189 15 N -0.454 5.454 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.170 1.170 20 C 0.007 3.993 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.580 7.875 10.903 16.513 hybrid contribution 0.413 -0.026 0.220 0.468 sum -9.168 7.848 11.123 16.412 Atomic orbital electron populations 1.22372 0.85960 1.02517 1.01136 1.61870 1.09142 1.14780 1.44256 1.22407 1.00543 0.88274 1.01152 1.22006 0.92606 0.98719 0.91809 1.22272 0.96293 0.97571 0.94334 0.90454 1.22655 0.95412 1.00004 0.96655 1.21849 0.98762 0.99679 0.80862 1.48612 1.17466 1.64578 1.08894 1.18483 0.84829 0.77308 0.83940 1.90545 1.79527 1.63081 1.19211 1.21406 0.99640 1.42537 0.96586 0.89466 1.27073 1.04283 0.93401 0.94114 1.70212 1.36691 1.33811 1.04649 0.84975 0.74785 0.79259 0.78988 1.18411 1.19613 1.17039 1.21754 0.84625 0.94997 0.97882 0.94430 0.91004 0.91444 0.92398 0.91051 0.94173 0.90432 0.92070 0.89256 0.87490 0.92926 0.93058 0.91506 0.95346 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.57 127.69 1.22 1.74 16 2 N -0.58 -14.03 4.96 -948.88 -4.71 -18.74 16 3 C 0.02 0.52 9.35 127.69 1.19 1.71 16 4 C 0.08 1.75 4.42 86.30 0.38 2.13 16 5 C -0.09 -2.48 2.97 -9.48 -0.03 -2.51 16 6 H 0.08 2.32 6.30 -2.39 -0.02 2.30 16 7 C -0.11 -2.77 6.42 31.78 0.20 -2.56 16 8 C 0.11 4.14 6.05 86.73 0.52 4.66 16 9 N -0.66 -32.66 3.33 -817.28 -2.72 -35.38 16 10 C 0.55 34.35 7.78 86.36 0.67 35.02 16 11 O -0.64 -45.95 15.28 -4.33 -0.07 -46.02 16 12 C -0.57 -33.66 9.06 24.83 0.22 -33.43 16 13 H 0.09 4.67 7.16 -2.91 -0.02 4.65 16 14 C 0.03 1.50 5.50 85.30 0.47 1.97 16 15 N -0.82 -52.47 11.83 21.84 0.26 -52.21 16 16 Si 1.00 42.04 29.56 68.60 2.03 44.06 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 20 C 0.13 5.57 6.32 86.78 0.55 6.12 16 21 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 23 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 24 H 0.06 1.40 6.33 -2.39 -0.02 1.38 16 25 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.76 7.89 -2.39 -0.02 1.75 16 28 H 0.06 1.10 8.12 -2.39 -0.02 1.09 16 29 H 0.09 1.95 8.04 -2.39 -0.02 1.93 16 30 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.28 15.76 8.29 -92.71 -0.77 14.99 16 34 H 0.03 1.39 8.04 -2.38 -0.02 1.37 16 35 H 0.04 1.61 7.90 -2.39 -0.02 1.60 16 Total: -1.00 -81.51 286.86 1.25 -80.26 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.05 Total: 13.18 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 5.41 Total: 14.85 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -7.17 Total: -106.33 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.07 Total: -46.02 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -81.51 1.25 -80.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688550942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.825 kcal (2) G-P(sol) polarization free energy of solvation -81.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds