Wall clock time and date at job start Sun Mar 29 2020 22:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47390 * 2 1 4 4 H 1.08996 * 109.47314 * 56.91847 * 3 2 1 5 5 C 1.50700 * 109.47582 * 176.92294 * 3 2 1 6 6 H 1.07997 * 119.99608 * 95.22128 * 5 3 2 7 7 C 1.37869 * 119.99934 * 275.22943 * 5 3 2 8 8 N 1.31515 * 120.00144 * 355.19262 * 7 5 3 9 9 Si 1.86796 * 120.00247 * 175.19681 * 7 5 3 10 10 H 1.48500 * 109.47122 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47611 * 119.99499 * 9 7 5 12 12 H 1.48500 * 109.47244 * 239.99949 * 9 7 5 13 13 N 1.46906 * 109.46755 * 296.92241 * 3 2 1 14 14 C 1.46840 * 110.99872 * 299.20924 * 13 3 2 15 15 C 1.53040 * 109.52439 * 174.15920 * 14 13 3 16 16 C 1.53123 * 109.27431 * 59.18176 * 15 14 13 17 17 C 1.53000 * 109.52082 * 182.44084 * 16 15 14 18 18 N 1.46893 * 109.57920 * 62.28287 * 16 15 14 19 19 C 1.53118 * 109.15853 * 302.34255 * 16 15 14 20 20 C 1.46843 * 111.00057 * 174.99834 * 13 3 2 21 21 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47091 * 300.00585 * 1 2 3 23 23 H 1.09006 * 109.46585 * 60.00371 * 1 2 3 24 24 H 1.08996 * 109.47598 * 239.99344 * 2 1 3 25 25 H 1.09006 * 109.46585 * 119.99628 * 2 1 3 26 26 H 0.97003 * 120.00177 * 5.23097 * 8 7 5 27 27 H 1.09005 * 109.46490 * 294.17395 * 14 13 3 28 28 H 1.09003 * 109.46434 * 54.14368 * 14 13 3 29 29 H 1.08994 * 109.50330 * 299.24093 * 15 14 13 30 30 H 1.08998 * 109.53526 * 179.13557 * 15 14 13 31 31 H 1.09000 * 109.47172 * 179.67868 * 17 16 15 32 32 H 1.09003 * 109.47202 * 299.68096 * 17 16 15 33 33 H 1.09005 * 109.47077 * 59.68377 * 17 16 15 34 34 H 1.00899 * 111.00162 * 60.28269 * 18 16 15 35 35 H 1.00895 * 111.00656 * 184.24019 * 18 16 15 36 36 H 1.09002 * 109.50682 * 297.71673 * 19 16 15 37 37 H 1.09003 * 109.53109 * 177.61575 * 19 16 15 38 38 H 1.08996 * 109.46548 * 305.85836 * 20 13 3 39 39 H 1.09003 * 109.46078 * 65.83126 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6324 1.9720 0.8610 5 6 3.5452 1.4432 0.0763 6 1 4.1316 1.5119 -0.8280 7 6 4.1734 1.3560 1.3004 8 7 3.4624 1.3675 2.4067 9 14 6.0345 1.2216 1.3877 10 1 6.5964 1.2294 0.0131 11 1 6.5787 2.3727 2.1519 12 1 6.4080 -0.0448 2.0674 13 7 1.6121 2.1131 -1.2350 14 6 2.1591 1.4367 -2.4179 15 6 1.5780 2.0703 -3.6839 16 6 1.9348 3.5591 -3.7136 17 6 1.3051 4.2113 -4.9461 18 7 3.3945 3.7144 -3.7678 19 6 1.3954 4.2304 -2.4476 20 6 1.9818 3.5341 -1.2174 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.4935 1.3607 2.3607 27 1 3.2443 1.5394 -2.4257 28 1 1.8948 0.3796 -2.3866 29 1 0.4941 1.9558 -3.6835 30 1 1.9956 1.5785 -4.5624 31 1 1.5548 5.2721 -4.9634 32 1 1.6896 3.7327 -5.8468 33 1 0.2221 4.0936 -4.9061 34 1 3.7740 3.2791 -4.5952 35 1 3.6567 4.6875 -3.7186 36 1 0.3085 4.1499 -2.4277 37 1 1.6826 5.2819 -2.4420 38 1 1.5887 4.0006 -0.3142 39 1 3.0678 3.6270 -1.2309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704556932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:28 Heat of formation + Delta-G solvation = -14.918069 kcal Electronic energy + Delta-G solvation = -17173.899284 eV Core-core repulsion = 14729.401844 eV Total energy + Delta-G solvation = -2444.497441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.00406 -36.04850 -32.67790 -31.47980 -30.11718 -29.27778 -27.69894 -25.24368 -23.01112 -22.62056 -21.28573 -19.41462 -18.48833 -16.56144 -15.56138 -15.11848 -14.32844 -14.05650 -13.87707 -13.65776 -13.18201 -12.92568 -12.78512 -12.38692 -12.06366 -11.84933 -11.60184 -11.33954 -10.97422 -10.83382 -10.74492 -10.51740 -10.38074 -10.10685 -9.91538 -9.82060 -9.46202 -9.31435 -8.82666 -8.33719 -8.25510 -6.81632 -6.22702 -3.97799 3.48032 3.50555 3.65208 4.59277 4.71889 4.99878 5.17726 5.20692 5.34726 5.46134 5.70914 5.72740 5.97973 5.99735 6.14797 6.18997 6.22448 6.25655 6.28220 6.36174 6.44534 6.50053 6.63381 6.77523 6.91998 6.97254 7.06076 7.20830 7.23026 7.46755 7.48270 7.49530 7.73585 8.11936 8.35703 8.50321 8.70330 8.95540 9.75557 11.11202 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.009935 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.798415 B = 2817.760357 C = 3424.292235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C 0.195 3.805 4 H 0.038 0.962 5 C -0.612 4.612 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.530 5.530 14 C 0.066 3.934 15 C -0.100 4.100 16 C 0.117 3.883 17 C -0.178 4.178 18 N -0.829 5.829 19 C -0.101 4.101 20 C 0.075 3.925 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.270 0.730 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.333 0.667 35 H 0.335 0.665 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 3.634 -11.884 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.089 3.911 4 H 0.056 0.944 5 C -0.652 4.652 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.254 5.254 14 C -0.062 4.062 15 C -0.139 4.139 16 C 0.024 3.976 17 C -0.237 4.237 18 N -0.359 5.359 19 C -0.140 4.140 20 C -0.054 4.054 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.857 3.122 -10.162 11.008 hybrid contribution -0.547 0.634 -1.932 2.105 sum -3.404 3.756 -12.094 13.113 Atomic orbital electron populations 1.21732 0.98156 0.98712 1.01217 1.21700 0.93025 0.99730 1.00209 1.19405 0.93888 0.90085 0.87770 0.94429 1.22570 0.92397 1.54799 0.95397 0.92629 1.25675 1.06508 0.93601 0.92342 1.70735 1.08417 1.46925 1.29160 0.83583 0.75045 0.76736 0.75000 1.21632 1.21596 1.21612 1.62379 1.58319 1.01517 1.03199 1.21799 0.98623 0.96740 0.89064 1.21631 1.00416 0.93560 0.98277 1.20835 0.87139 0.96033 0.93599 1.22649 1.01871 1.00313 0.98905 1.58790 1.10089 1.20417 1.46559 1.21646 0.99984 0.97701 0.94636 1.21638 0.99602 0.89429 0.94738 0.95354 0.94104 0.92615 0.93652 0.93091 0.91843 0.93009 0.92409 0.91974 0.93144 0.93213 0.93210 0.92314 0.85429 0.85288 0.91915 0.93036 0.93091 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.78 37.16 0.36 -2.41 16 2 C -0.11 -2.48 5.17 -26.73 -0.14 -2.62 16 3 C 0.20 4.84 1.49 -68.86 -0.10 4.74 16 4 H 0.04 1.04 6.61 -51.93 -0.34 0.70 16 5 C -0.61 -16.78 6.91 -34.44 -0.24 -17.01 16 6 H 0.06 1.58 6.07 -52.49 -0.32 1.26 16 7 C 0.02 0.66 5.45 -17.82 -0.10 0.57 16 8 N -0.92 -27.51 13.63 55.43 0.76 -26.76 16 9 Si 1.07 25.76 29.91 -169.99 -5.08 20.68 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.53 -11.33 4.01 -228.08 -0.91 -12.25 16 14 C 0.07 1.31 4.66 -3.84 -0.02 1.29 16 15 C -0.10 -1.59 5.05 -26.65 -0.13 -1.73 16 16 C 0.12 1.67 0.83 -131.48 -0.11 1.57 16 17 C -0.18 -2.07 8.77 37.16 0.33 -1.74 16 18 N -0.83 -11.79 7.57 0.84 0.01 -11.78 16 19 C -0.10 -1.63 5.01 -26.65 -0.13 -1.76 16 20 C 0.07 1.53 4.98 -3.84 -0.02 1.51 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 1.07 7.69 -51.93 -0.40 0.67 16 24 H 0.04 1.02 6.14 -51.93 -0.32 0.70 16 25 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.27 8.10 6.66 -40.82 -0.27 7.83 16 27 H 0.05 1.16 5.91 -51.93 -0.31 0.85 16 28 H 0.06 1.17 5.97 -51.93 -0.31 0.86 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.33 4.18 9.00 -39.29 -0.35 3.82 16 35 H 0.33 4.26 8.99 -39.29 -0.35 3.91 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.05 1.24 6.99 -51.93 -0.36 0.88 16 LS Contribution 294.08 15.07 4.43 4.43 Total: -1.00 -29.07 294.08 -7.89 -36.96 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.78 Total: 6.32 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.30 Total: -17.60 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.15 Total: -50.79 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.07 -7.89 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704556932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.040 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds