Wall clock time and date at job start Sun Mar 29 2020 22:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99949 * 2 1 4 4 C 1.46905 * 111.00042 * 123.95541 * 2 1 3 5 5 H 1.08993 * 109.46704 * 300.00208 * 4 2 1 6 6 C 1.53001 * 109.46664 * 60.00204 * 4 2 1 7 7 C 1.53005 * 109.46490 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47090 * 299.99867 * 7 6 4 9 9 C 1.52993 * 109.47250 * 60.00224 * 8 7 6 10 10 H 1.08994 * 109.47356 * 60.00021 * 9 8 7 11 11 N 1.46904 * 109.47308 * 179.97438 * 9 8 7 12 12 C 1.46899 * 111.00029 * 275.00154 * 11 9 8 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99923 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00006 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47093 * 90.00088 * 17 15 13 19 19 H 1.48495 * 109.46891 * 210.00496 * 17 15 13 20 20 H 1.48504 * 109.47189 * 330.00185 * 17 15 13 21 21 C 1.52998 * 109.47013 * 179.97438 * 4 2 1 22 22 H 1.08994 * 109.47257 * 296.04420 * 1 2 3 23 23 H 1.09001 * 109.46913 * 56.04448 * 1 2 3 24 24 H 1.09002 * 109.47175 * 176.04301 * 1 2 3 25 25 H 1.09003 * 109.46913 * 183.95452 * 3 2 1 26 26 H 1.08995 * 109.47131 * 303.95357 * 3 2 1 27 27 H 1.09003 * 109.47287 * 63.95701 * 3 2 1 28 28 H 1.09002 * 109.47089 * 299.99605 * 6 4 2 29 29 H 1.08994 * 109.47661 * 59.99985 * 6 4 2 30 30 H 1.09007 * 109.47338 * 59.99961 * 7 6 4 31 31 H 1.09005 * 109.47110 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46927 * 299.99756 * 8 7 6 33 33 H 1.09001 * 109.47079 * 180.02562 * 8 7 6 34 34 H 1.00902 * 111.00190 * 151.03855 * 11 9 8 35 35 H 1.09002 * 109.47043 * 299.99792 * 12 11 9 36 36 H 1.09001 * 109.47354 * 59.99854 * 12 11 9 37 37 H 0.97000 * 119.99684 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46987 * 59.99951 * 21 4 2 39 39 H 1.08998 * 109.47427 * 300.00454 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6459 -0.3201 2.0687 6 6 1.5049 -2.2126 1.0490 7 6 2.0527 -3.0102 2.2342 8 6 3.5821 -2.9874 2.2010 9 6 4.0727 -1.5409 2.2895 10 1 3.7228 -1.0949 3.2204 11 7 5.5412 -1.5191 2.2582 12 6 6.0995 -1.7242 3.6014 13 6 7.6045 -1.6961 3.5295 14 1 8.0970 -1.5418 2.5808 15 6 8.3528 -1.8685 4.6747 16 7 9.6662 -1.8435 4.6120 17 14 7.5009 -2.1360 6.3155 18 1 7.2900 -3.5899 6.5324 19 1 8.3467 -1.5901 7.4071 20 1 6.1887 -1.4407 6.3112 21 6 3.5249 -0.7437 1.1033 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0828 1.3432 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 0.4152 -2.2288 1.0732 29 1 1.8543 -2.6585 0.1179 30 1 1.7028 -2.5642 3.1653 31 1 1.7029 -4.0407 2.1715 32 1 3.9320 -3.4335 1.2700 33 1 3.9724 -3.5560 3.0451 34 1 5.8815 -0.6603 1.8523 35 1 5.7522 -0.9315 4.2641 36 1 5.7725 -2.6897 3.9873 37 1 10.1925 -1.9651 5.4176 38 1 3.8747 0.2867 1.1661 39 1 3.8740 -1.1898 0.1721 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715489044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:58 Heat of formation + Delta-G solvation = -29.584823 kcal Electronic energy + Delta-G solvation = -16251.621654 eV Core-core repulsion = 13806.488216 eV Total energy + Delta-G solvation = -2445.133439 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45765 -37.67431 -35.63572 -34.26580 -31.48599 -30.41106 -28.80414 -27.50865 -25.10359 -23.36603 -22.88977 -21.36633 -20.67705 -18.98286 -17.14154 -16.70690 -16.08722 -16.00509 -15.75415 -15.42402 -15.10409 -14.77745 -14.50424 -14.32078 -13.82104 -13.65867 -13.25936 -12.88601 -12.75630 -12.61691 -12.34498 -12.27751 -12.26291 -12.09202 -11.87303 -11.52305 -11.47202 -11.16858 -10.96769 -10.82135 -9.29218 -9.15492 -8.32012 -6.36485 1.32670 1.34018 1.45071 2.31926 2.91732 3.01836 3.38058 3.75259 3.97613 4.07592 4.26012 4.31126 4.36641 4.47048 4.48880 4.50277 4.53592 4.63525 4.72188 4.74815 4.77671 4.95535 5.00470 5.04282 5.09666 5.14519 5.18893 5.26817 5.29773 5.34468 5.48776 5.56951 5.97781 6.10621 6.14995 6.55885 6.65499 6.75932 7.28689 8.84852 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041810 B = 0.005771 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.538100 B = 4851.018070 C = 5147.759201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.554 5.554 3 C 0.019 3.981 4 C 0.093 3.907 5 H 0.033 0.967 6 C -0.104 4.104 7 C -0.110 4.110 8 C -0.106 4.106 9 C 0.086 3.914 10 H 0.025 0.975 11 N -0.685 5.685 12 C 0.179 3.821 13 C -0.529 4.529 14 H 0.037 0.963 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.254 1.254 21 C -0.102 4.102 22 H 0.024 0.976 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.335 0.665 35 H -0.018 1.018 36 H 0.023 0.977 37 H 0.268 0.732 38 H 0.059 0.941 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.753 2.625 -6.169 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.278 5.278 3 C -0.129 4.129 4 C -0.016 4.016 5 H 0.051 0.949 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.144 4.144 9 C -0.024 4.024 10 H 0.043 0.957 11 N -0.315 5.315 12 C 0.050 3.950 13 C -0.567 4.567 14 H 0.056 0.944 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.178 1.178 21 C -0.141 4.141 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.153 0.847 35 H 0.000 1.000 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.386 1.734 -6.683 22.473 hybrid contribution 0.136 1.211 1.909 2.265 sum -21.250 2.945 -4.774 21.978 Atomic orbital electron populations 1.22491 0.86293 1.03096 1.00800 1.62026 1.08895 1.13997 1.42841 1.22472 1.01119 0.88548 1.00782 1.21556 0.93729 0.95072 0.91247 0.94869 1.21577 1.00751 0.93078 0.98792 1.21493 0.93772 1.01128 0.98466 1.21521 0.95940 0.95367 1.01621 1.21574 0.87414 0.96684 0.96740 0.95660 1.60419 1.06371 1.41892 1.22856 1.19743 0.93276 0.94802 0.87193 1.21350 0.91266 1.49272 0.94850 0.94434 1.25866 0.95335 0.94332 1.03286 1.70051 1.06466 1.51760 1.30417 0.85675 0.79137 0.79442 0.78431 1.18914 1.20381 1.17774 1.21689 0.94911 0.99290 0.98175 0.95733 0.90401 0.90277 0.91572 0.90098 0.95873 0.90201 0.91312 0.92150 0.90015 0.91921 0.93752 0.84709 1.00041 0.95938 0.92289 0.92198 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.21 127.69 1.18 1.51 16 2 N -0.55 -11.50 4.89 -923.28 -4.51 -16.01 16 3 C 0.02 0.36 9.11 127.69 1.16 1.53 16 4 C 0.09 2.13 1.94 44.91 0.09 2.22 16 5 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.10 -2.13 4.97 30.60 0.15 -1.98 16 7 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 8 C -0.11 -3.23 5.42 30.59 0.17 -3.07 16 9 C 0.09 2.88 2.50 44.93 0.11 2.99 16 10 H 0.03 0.89 7.80 -2.39 -0.02 0.87 16 11 N -0.68 -29.02 6.30 -495.49 -3.12 -32.14 16 12 C 0.18 8.84 4.31 85.56 0.37 9.21 16 13 C -0.53 -31.52 9.87 25.60 0.25 -31.27 16 14 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 15 C 0.01 0.56 5.47 84.65 0.46 1.02 16 16 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 17 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 21 C -0.10 -2.84 4.12 30.61 0.13 -2.71 16 22 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 23 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 24 H 0.08 1.12 6.30 -2.39 -0.02 1.11 16 25 H 0.07 1.39 6.24 -2.39 -0.01 1.37 16 26 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 27 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.08 1.32 6.40 -2.39 -0.02 1.31 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.49 7.45 -2.39 -0.02 1.47 16 34 H 0.34 13.98 8.34 -89.69 -0.75 13.23 16 35 H -0.02 -0.89 7.11 -2.39 -0.02 -0.90 16 36 H 0.02 1.12 6.86 -2.39 -0.02 1.10 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.06 1.65 6.33 -2.38 -0.02 1.63 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.06 296.78 -1.00 -67.07 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.20 Total: 16.89 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.25 Total: -22.84 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -7.33 Total: -107.88 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -66.06 -1.00 -67.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715489044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.481 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds