Wall clock time and date at job start Sun Mar 29 2020 21:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 120.00018 * 2 1 4 4 N 1.34770 * 120.00124 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00039 * 180.02562 * 4 2 1 6 6 H 1.09000 * 110.88865 * 31.12068 * 5 4 2 7 7 C 1.55129 * 111.22316 * 267.20480 * 5 4 2 8 8 N 1.47421 * 104.72458 * 279.17476 * 7 5 4 9 9 C 1.36945 * 125.64870 * 155.81551 * 8 7 5 10 10 H 1.07999 * 120.00077 * 179.69717 * 9 8 7 11 11 C 1.38812 * 119.99637 * 359.69551 * 9 8 7 12 12 N 1.31617 * 120.00227 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99854 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46819 * 59.99973 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47086 * 300.00269 * 13 11 9 17 17 C 1.47018 * 108.70379 * 335.55582 * 8 7 5 18 18 C 1.54320 * 107.27210 * 1.28563 * 17 8 7 19 19 C 1.52997 * 110.72279 * 140.55498 * 18 17 8 20 20 C 1.52998 * 110.71901 * 263.65347 * 18 17 8 21 21 H 1.08996 * 109.47495 * 239.99898 * 1 2 3 22 22 H 1.08998 * 109.47345 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47206 * 119.99726 * 1 2 3 24 24 H 0.96995 * 120.00280 * 0.02562 * 4 2 1 25 25 H 1.08996 * 110.49705 * 160.33692 * 7 5 4 26 26 H 1.08997 * 110.34301 * 37.94297 * 7 5 4 27 27 H 0.97005 * 120.00046 * 179.97438 * 12 11 9 28 28 H 1.09010 * 109.88204 * 120.70275 * 17 8 7 29 29 H 1.09004 * 109.88434 * 241.70985 * 17 8 7 30 30 H 1.09001 * 109.47256 * 61.45461 * 19 18 17 31 31 H 1.08996 * 109.47517 * 181.45410 * 19 18 17 32 32 H 1.09000 * 109.47363 * 301.45217 * 19 18 17 33 33 H 1.08998 * 109.47281 * 58.54506 * 20 18 17 34 34 H 1.09002 * 109.46979 * 178.54492 * 20 18 17 35 35 H 1.08999 * 109.47256 * 298.54167 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0343 -0.2952 0.5274 7 6 4.2080 -1.2379 -1.4430 8 7 4.1319 -2.6650 -1.8052 9 6 4.0653 -3.1626 -3.0793 10 1 4.0172 -4.2294 -3.2405 11 6 4.0597 -2.2958 -4.1635 12 7 4.1188 -0.9957 -3.9670 13 14 3.9696 -2.9746 -5.9014 14 1 2.7187 -3.7586 -6.0624 15 1 3.9775 -1.8513 -6.8726 16 1 5.1403 -3.8535 -6.1509 17 6 4.1456 -3.4656 -0.5722 18 6 4.2018 -2.4798 0.6137 19 6 3.3112 -2.9614 1.7607 20 6 5.6426 -2.2905 1.0924 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3633 -0.5138 -0.8900 24 1 1.6959 -2.0072 0.0005 25 1 5.2424 -0.8952 -1.4672 26 1 3.5941 -0.6419 -2.1183 27 1 4.1152 -0.3900 -4.7247 28 1 3.2389 -4.0678 -0.5111 29 1 5.0221 -4.1135 -0.5606 30 1 3.6682 -3.9278 2.1168 31 1 3.3458 -2.2386 2.5758 32 1 2.2851 -3.0610 1.4069 33 1 6.2531 -1.9191 0.2693 34 1 5.6617 -1.5720 1.9119 35 1 6.0394 -3.2454 1.4370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972702237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:06 Heat of formation + Delta-G solvation = -18.353239 kcal Electronic energy + Delta-G solvation = -16711.788895 eV Core-core repulsion = 14131.309400 eV Total energy + Delta-G solvation = -2580.479495 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55062 -37.74325 -33.78339 -32.94531 -30.69653 -29.75434 -27.75311 -26.52454 -25.58016 -23.27182 -20.60220 -19.71340 -18.60070 -16.74439 -16.32733 -15.84214 -14.79545 -14.39222 -13.87957 -13.80930 -13.46958 -13.20799 -12.63844 -12.34881 -12.26252 -11.92463 -11.80661 -11.67900 -11.25674 -11.13799 -10.95603 -10.75515 -10.37179 -10.19519 -9.92851 -9.78320 -9.66392 -9.32875 -8.66528 -8.27706 -6.79622 -5.61322 -3.04920 3.19175 3.40473 3.44806 3.46943 3.82831 4.49786 5.03208 5.23523 5.29251 5.32138 5.51984 5.53678 5.63671 5.65573 5.84789 5.90360 6.02216 6.07328 6.14138 6.22944 6.29774 6.46016 6.50897 6.64332 6.72606 6.81698 7.05340 7.52938 7.63574 7.90666 8.13149 8.41238 8.81296 9.23576 9.85167 10.49655 11.40924 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.010556 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.907059 B = 2651.830153 C = 3354.231632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.508 3.492 3 O -0.555 6.555 4 N -0.703 5.703 5 C 0.122 3.878 6 H 0.086 0.914 7 C 0.146 3.854 8 N -0.601 5.601 9 C -0.226 4.226 10 H 0.076 0.924 11 C -0.009 4.009 12 N -0.918 5.918 13 Si 0.913 3.087 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.143 3.857 18 C -0.088 4.088 19 C -0.130 4.130 20 C -0.128 4.128 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.396 0.604 25 H 0.019 0.981 26 H 0.112 0.888 27 H 0.253 0.747 28 H 0.021 0.979 29 H 0.023 0.977 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -2.819 10.427 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.434 6.434 4 N -0.353 5.353 5 C 0.016 3.984 6 H 0.104 0.896 7 C 0.020 3.980 8 N -0.327 5.327 9 C -0.354 4.354 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.566 5.566 13 Si 0.744 3.256 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.017 3.983 18 C -0.089 4.089 19 C -0.187 4.187 20 C -0.186 4.186 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.231 0.769 25 H 0.037 0.963 26 H 0.130 0.870 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.025 -1.988 10.193 11.137 hybrid contribution -0.191 -0.865 -1.011 1.345 sum -4.216 -2.853 9.181 10.498 Atomic orbital electron populations 1.21885 0.92727 1.04829 1.03766 1.20604 0.90186 0.83797 0.75913 1.90685 1.70833 1.31489 1.50401 1.45825 1.07409 1.08101 1.73948 1.22512 0.79310 0.96419 1.00136 0.89586 1.22358 0.98441 0.86850 0.90365 1.44469 1.86577 1.01410 1.00286 1.18990 1.43403 0.91748 0.81252 0.90639 1.24797 1.02380 0.95429 0.97919 1.69799 1.56994 1.00810 1.28988 0.86185 0.77823 0.77443 0.84197 1.21249 1.21614 1.21267 1.21399 0.97812 0.92933 0.86115 1.21841 0.95729 0.96242 0.95135 1.21707 0.99076 1.00497 0.97459 1.21685 0.94997 1.01037 1.00869 0.90107 0.89508 0.89561 0.76902 0.96275 0.87000 0.93637 0.96131 0.95954 0.92846 0.92937 0.92885 0.91810 0.93138 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.32 36.00 0.37 -1.82 16 2 C 0.51 9.21 7.94 -10.99 -0.09 9.13 16 3 O -0.56 -12.49 16.73 5.55 0.09 -12.40 16 4 N -0.70 -12.43 4.53 -51.61 -0.23 -12.67 16 5 C 0.12 2.40 2.67 -65.66 -0.18 2.23 16 6 H 0.09 1.76 7.44 -51.93 -0.39 1.37 16 7 C 0.15 3.62 5.30 -2.41 -0.01 3.61 16 8 N -0.60 -15.12 3.39 -169.94 -0.58 -15.69 16 9 C -0.23 -6.24 10.27 -15.06 -0.15 -6.40 16 10 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 11 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 12 N -0.92 -27.35 10.08 55.49 0.56 -26.79 16 13 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.14 2.89 6.40 -3.07 -0.02 2.87 16 18 C -0.09 -1.49 0.80 -152.68 -0.12 -1.61 16 19 C -0.13 -1.73 8.15 37.16 0.30 -1.43 16 20 C -0.13 -1.98 8.44 37.16 0.31 -1.67 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.09 1.07 8.12 -51.93 -0.42 0.64 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.40 6.22 7.13 -40.82 -0.29 5.93 16 25 H 0.02 0.52 7.71 -51.93 -0.40 0.12 16 26 H 0.11 3.24 5.86 -51.93 -0.30 2.94 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.40 7.82 -51.92 -0.41 0.00 16 29 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.67 6.34 -51.93 -0.33 0.34 16 33 H 0.06 1.11 7.44 -51.93 -0.39 0.73 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -32.37 282.09 -6.02 -38.40 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.42 Total: 3.14 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 0.32 Total: 4.55 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.25 Total: -55.15 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.37 -6.02 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972702237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.045 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds