Wall clock time and date at job start Sun Mar 29 2020 21:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 120.00171 * 2 1 4 4 N 1.34780 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99994 * 179.97438 * 4 2 1 6 6 H 1.09012 * 109.47047 * 325.00525 * 5 4 2 7 7 C 1.53001 * 109.47061 * 85.00342 * 5 4 2 8 8 C 1.53001 * 109.47030 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46991 * 300.00257 * 8 7 5 10 10 C 1.52992 * 109.47566 * 59.99965 * 9 8 7 11 11 H 1.09007 * 109.46988 * 59.99465 * 10 9 8 12 12 N 1.46499 * 109.47400 * 180.02562 * 10 9 8 13 13 C 1.36935 * 119.99938 * 274.99969 * 12 10 9 14 14 H 1.07999 * 120.00083 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99632 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99535 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00576 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00326 * 17 15 13 20 20 H 1.48498 * 109.47210 * 150.00037 * 17 15 13 21 21 C 1.52997 * 109.47285 * 205.00782 * 5 4 2 22 22 H 1.09007 * 109.46946 * 270.00454 * 1 2 3 23 23 H 1.09003 * 109.47314 * 29.99891 * 1 2 3 24 24 H 1.08990 * 109.47292 * 150.00493 * 1 2 3 25 25 H 0.97002 * 119.99634 * 0.02562 * 4 2 1 26 26 H 1.08995 * 109.46954 * 60.00282 * 7 5 4 27 27 H 1.09000 * 109.47052 * 299.99447 * 7 5 4 28 28 H 1.08997 * 109.47459 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47570 * 60.00029 * 8 7 5 30 30 H 1.09005 * 109.46675 * 299.99798 * 9 8 7 31 31 H 1.09005 * 109.46931 * 180.02562 * 9 8 7 32 32 H 0.96999 * 119.99984 * 95.00587 * 12 10 9 33 33 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.47383 * 59.99930 * 21 5 4 35 35 H 1.09005 * 109.46516 * 299.99693 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0090 -0.3257 -0.5902 7 6 4.1564 -1.0407 1.4367 8 6 5.6864 -1.0401 1.4360 9 6 6.1966 -2.3475 0.8267 10 6 5.6861 -2.4741 -0.6099 11 1 6.0488 -1.6323 -1.1999 12 7 6.1742 -3.7263 -1.1931 13 6 7.4155 -3.7752 -1.7692 14 1 8.0345 -2.8905 -1.7940 15 6 7.8777 -4.9615 -2.3222 16 7 9.0711 -5.0086 -2.8755 17 14 6.8067 -6.4914 -2.2800 18 1 7.0816 -7.2539 -1.0357 19 1 5.3759 -6.0950 -2.3118 20 1 7.1111 -7.3415 -3.4589 21 6 4.1556 -2.4749 -0.6092 22 1 -0.3633 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5137 25 1 1.6958 -2.0073 0.0005 26 1 3.7933 -1.8821 2.0267 27 1 3.7933 -0.1090 1.8705 28 1 6.0502 -0.9503 2.4596 29 1 6.0492 -0.1984 0.8461 30 1 5.8338 -3.1892 1.4168 31 1 7.2867 -2.3472 0.8267 32 1 5.6180 -4.5207 -1.1712 33 1 9.3942 -5.8378 -3.2617 34 1 3.7919 -2.5651 -1.6327 35 1 3.7925 -3.3164 -0.0190 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980830105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:36 Heat of formation + Delta-G solvation = -45.848364 kcal Electronic energy + Delta-G solvation = -15892.971191 eV Core-core repulsion = 13311.299417 eV Total energy + Delta-G solvation = -2581.671773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92238 -37.99140 -34.77641 -33.40137 -31.36188 -30.63241 -28.85256 -27.85118 -23.51654 -22.20410 -21.34166 -20.34349 -19.55445 -17.62193 -16.75403 -16.31809 -15.30309 -14.65905 -14.54098 -13.92989 -13.83764 -13.50736 -13.29820 -12.78474 -12.75133 -12.47933 -12.19543 -12.09489 -11.27060 -11.03308 -10.98477 -10.86218 -10.40613 -10.33254 -10.21768 -10.03420 -9.68551 -9.58636 -9.02923 -8.89560 -7.27918 -5.77308 -3.13018 2.60020 3.19933 3.35591 3.38208 3.44002 4.58020 4.69424 4.85573 4.98532 5.04579 5.19447 5.26118 5.45260 5.51305 5.53279 5.61497 5.67601 5.78228 5.81779 5.93927 6.06290 6.20516 6.26372 6.37828 6.46480 6.56111 6.64364 6.88451 7.02505 7.49096 7.99505 8.19794 8.41844 9.20161 9.92550 10.12297 11.41127 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039421 B = 0.006198 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.104202 B = 4516.703996 C = 4883.241975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.726 5.726 5 C 0.146 3.854 6 H 0.088 0.912 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.187 3.813 11 H 0.057 0.943 12 N -0.748 5.748 13 C -0.242 4.242 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.291 1.291 21 C -0.132 4.132 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.399 0.601 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 5.954 8.107 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.427 6.427 4 N -0.376 5.376 5 C 0.042 3.958 6 H 0.107 0.893 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.177 4.177 10 C 0.078 3.922 11 H 0.075 0.925 12 N -0.390 5.390 13 C -0.372 4.372 14 H 0.109 0.891 15 C -0.192 4.192 16 N -0.582 5.582 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.218 1.218 21 C -0.171 4.171 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.233 0.767 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.009 6.760 7.980 19.123 hybrid contribution -0.909 -1.711 0.020 1.938 sum -16.918 5.049 8.000 19.383 Atomic orbital electron populations 1.21888 0.92117 1.04739 1.04529 1.20787 0.90465 0.83724 0.75599 1.90722 1.70807 1.31434 1.49732 1.46263 1.07785 1.08502 1.75090 1.21013 0.78405 0.99460 0.96950 0.89345 1.21883 0.96665 1.01522 0.96177 1.21485 0.94122 0.99121 1.00644 1.22250 1.01655 0.95618 0.98166 1.20089 0.89459 0.90290 0.92407 0.92469 1.42764 1.18270 1.07640 1.70369 1.19089 0.91156 0.97729 1.29246 0.89137 1.24672 0.96517 0.97455 1.00522 1.69706 1.17782 1.26729 1.43995 0.86544 0.80235 0.84371 0.77327 1.21137 1.20412 1.21789 1.22132 0.98344 0.95741 1.00918 0.89074 0.89057 0.90286 0.76748 0.92150 0.92137 0.92346 0.91964 0.92787 0.91375 0.80745 0.93073 0.91276 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.30 36.00 0.37 -0.88 16 2 C 0.51 6.08 7.90 -10.99 -0.09 6.00 16 3 O -0.55 -9.15 16.76 5.56 0.09 -9.05 16 4 N -0.73 -7.99 5.08 -53.80 -0.27 -8.26 16 5 C 0.15 1.98 2.45 -67.93 -0.17 1.81 16 6 H 0.09 1.39 7.58 -51.92 -0.39 1.00 16 7 C -0.12 -1.63 5.49 -26.73 -0.15 -1.77 16 8 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 9 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 10 C 0.19 3.50 2.77 -67.91 -0.19 3.31 16 11 H 0.06 1.14 8.08 -51.92 -0.42 0.72 16 12 N -0.75 -17.32 4.92 -53.40 -0.26 -17.58 16 13 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 16 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 17 Si 0.88 21.88 27.74 -169.99 -4.71 17.17 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 C -0.13 -1.97 4.86 -26.71 -0.13 -2.09 16 22 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.40 3.25 8.60 -40.82 -0.35 2.90 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -33.17 286.18 -6.61 -39.78 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.64 Total: 6.93 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.91 Total: -4.78 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.24 Total: -54.35 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.17 -6.61 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980830105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.071 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds