Wall clock time and date at job start Sun Mar 29 2020 21:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 120.00171 * 2 1 4 4 N 1.34780 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99994 * 179.97438 * 4 2 1 6 6 H 1.09012 * 109.47047 * 325.00525 * 5 4 2 7 7 C 1.53001 * 109.47061 * 85.00342 * 5 4 2 8 8 C 1.53001 * 109.47030 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46991 * 300.00257 * 8 7 5 10 10 C 1.52992 * 109.47566 * 59.99965 * 9 8 7 11 11 H 1.09007 * 109.46988 * 59.99465 * 10 9 8 12 12 N 1.46499 * 109.47400 * 180.02562 * 10 9 8 13 13 C 1.36935 * 119.99938 * 274.99969 * 12 10 9 14 14 H 1.07999 * 120.00083 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99632 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99535 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00576 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00326 * 17 15 13 20 20 H 1.48498 * 109.47210 * 150.00037 * 17 15 13 21 21 C 1.52997 * 109.47285 * 205.00782 * 5 4 2 22 22 H 1.09007 * 109.46946 * 270.00454 * 1 2 3 23 23 H 1.09003 * 109.47314 * 29.99891 * 1 2 3 24 24 H 1.08990 * 109.47292 * 150.00493 * 1 2 3 25 25 H 0.97002 * 119.99634 * 0.02562 * 4 2 1 26 26 H 1.08995 * 109.46954 * 60.00282 * 7 5 4 27 27 H 1.09000 * 109.47052 * 299.99447 * 7 5 4 28 28 H 1.08997 * 109.47459 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47570 * 60.00029 * 8 7 5 30 30 H 1.09005 * 109.46675 * 299.99798 * 9 8 7 31 31 H 1.09005 * 109.46931 * 180.02562 * 9 8 7 32 32 H 0.96999 * 119.99984 * 95.00587 * 12 10 9 33 33 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.47383 * 59.99930 * 21 5 4 35 35 H 1.09005 * 109.46516 * 299.99693 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0090 -0.3257 -0.5902 7 6 4.1564 -1.0407 1.4367 8 6 5.6864 -1.0401 1.4360 9 6 6.1966 -2.3475 0.8267 10 6 5.6861 -2.4741 -0.6099 11 1 6.0488 -1.6323 -1.1999 12 7 6.1742 -3.7263 -1.1931 13 6 7.4155 -3.7752 -1.7692 14 1 8.0345 -2.8905 -1.7940 15 6 7.8777 -4.9615 -2.3222 16 7 9.0711 -5.0086 -2.8755 17 14 6.8067 -6.4914 -2.2800 18 1 7.0816 -7.2539 -1.0357 19 1 5.3759 -6.0950 -2.3118 20 1 7.1111 -7.3415 -3.4589 21 6 4.1556 -2.4749 -0.6092 22 1 -0.3633 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5137 25 1 1.6958 -2.0073 0.0005 26 1 3.7933 -1.8821 2.0267 27 1 3.7933 -0.1090 1.8705 28 1 6.0502 -0.9503 2.4596 29 1 6.0492 -0.1984 0.8461 30 1 5.8338 -3.1892 1.4168 31 1 7.2867 -2.3472 0.8267 32 1 5.6180 -4.5207 -1.1712 33 1 9.3942 -5.8378 -3.2617 34 1 3.7919 -2.5651 -1.6327 35 1 3.7925 -3.3164 -0.0190 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980830105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:36 Heat of formation + Delta-G solvation = -70.341628 kcal Electronic energy + Delta-G solvation = -15894.033298 eV Core-core repulsion = 13311.299417 eV Total energy + Delta-G solvation = -2582.733881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97721 -39.27187 -36.32328 -34.81811 -33.28848 -31.57672 -30.27033 -28.98718 -25.42071 -23.41780 -22.72845 -21.41331 -20.97639 -19.57872 -17.75023 -17.49838 -16.45857 -16.26613 -15.89997 -15.41619 -15.13321 -14.89969 -14.60609 -14.48266 -13.81248 -13.62092 -13.19603 -13.07917 -12.95915 -12.83266 -12.39653 -12.18599 -12.00043 -11.81584 -11.70022 -11.50250 -11.45535 -10.92078 -10.80289 -10.03825 -9.31119 -8.01198 -5.35225 1.38344 1.43320 1.50539 1.69558 2.28911 2.50116 3.30080 3.45416 3.83974 3.91332 4.01350 4.17531 4.26824 4.37183 4.50007 4.54869 4.56540 4.64499 4.71671 4.74184 4.96513 5.06798 5.13917 5.17390 5.19998 5.34145 5.47607 5.50764 5.62285 5.78651 6.22744 6.64937 7.09220 7.33356 7.84221 8.05348 9.20682 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039421 B = 0.006198 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.104202 B = 4516.703996 C = 4883.241975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.713 5.713 5 C 0.153 3.847 6 H 0.060 0.940 7 C -0.115 4.115 8 C -0.109 4.109 9 C -0.128 4.128 10 C 0.179 3.821 11 H 0.032 0.968 12 N -0.749 5.749 13 C -0.231 4.231 14 H 0.051 0.949 15 C -0.067 4.067 16 N -0.987 5.987 17 Si 0.959 3.041 18 H -0.278 1.278 19 H -0.246 1.246 20 H -0.298 1.298 21 C -0.117 4.117 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.417 0.583 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.067 0.933 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.138 4.766 9.489 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.290 3.710 3 O -0.485 6.485 4 N -0.365 5.365 5 C 0.047 3.953 6 H 0.078 0.922 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.168 4.168 10 C 0.070 3.930 11 H 0.050 0.950 12 N -0.392 5.392 13 C -0.362 4.362 14 H 0.069 0.931 15 C -0.258 4.258 16 N -0.638 5.638 17 Si 0.786 3.214 18 H -0.204 1.204 19 H -0.170 1.170 20 H -0.225 1.225 21 C -0.156 4.156 22 H 0.130 0.870 23 H 0.108 0.892 24 H 0.126 0.874 25 H 0.254 0.746 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.536 5.575 9.395 22.383 hybrid contribution 0.219 -1.225 -0.405 1.309 sum -19.318 4.350 8.990 21.747 Atomic orbital electron populations 1.21895 0.87941 1.06129 1.06247 1.21688 0.92396 0.82824 0.74066 1.90706 1.72252 1.33349 1.52214 1.46103 1.06538 1.09453 1.74426 1.20723 0.80229 0.97569 0.96796 0.92166 1.21800 0.95350 1.02245 0.95934 1.21422 0.95228 0.96905 1.01182 1.22079 0.99715 0.97749 0.97220 1.20297 0.92436 0.87606 0.92643 0.94956 1.42711 1.16678 1.09469 1.70374 1.19009 0.92469 0.96303 1.28398 0.93107 1.25556 0.98122 1.01320 1.00800 1.69908 1.20309 1.27646 1.45942 0.85345 0.79759 0.79261 0.77013 1.20388 1.17033 1.22544 1.21925 0.94830 0.97301 1.01555 0.87028 0.89152 0.87421 0.74584 0.90075 0.92383 0.90516 0.93046 0.91586 0.94468 0.79915 0.93397 0.91445 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.30 71.23 0.73 -1.04 16 2 C 0.50 10.89 7.90 87.66 0.69 11.58 16 3 O -0.60 -19.76 16.76 -3.03 -0.05 -19.81 16 4 N -0.71 -13.58 5.08 -442.53 -2.25 -15.82 16 5 C 0.15 3.86 2.45 44.99 0.11 3.97 16 6 H 0.06 1.90 7.58 -2.38 -0.02 1.88 16 7 C -0.11 -2.74 5.49 30.59 0.17 -2.57 16 8 C -0.11 -2.94 5.92 30.60 0.18 -2.76 16 9 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 10 C 0.18 6.61 2.77 45.01 0.12 6.74 16 11 H 0.03 1.35 8.08 -2.38 -0.02 1.33 16 12 N -0.75 -34.16 4.92 -322.87 -1.59 -35.75 16 13 C -0.23 -13.20 10.41 84.03 0.87 -12.32 16 14 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.99 -63.84 13.97 21.65 0.30 -63.54 16 17 Si 0.96 44.75 27.74 68.60 1.90 46.66 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 C -0.12 -3.21 4.86 30.61 0.15 -3.06 16 22 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 25 H 0.42 4.98 8.60 -92.71 -0.80 4.19 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.37 15.64 5.66 -92.71 -0.52 15.11 16 33 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -74.97 286.18 1.68 -73.29 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.31 Total: 22.00 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 3.67 Total: -7.03 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -3.53 Total: -115.11 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.66 kcal Total: -74.97 1.68 -73.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980830105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.950 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds