Wall clock time and date at job start Sun Mar 29 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 119.99770 * 2 1 4 4 N 1.34777 * 119.99843 * 180.02562 * 2 1 3 5 5 C 1.48415 * 127.82800 * 0.04052 * 4 2 1 6 6 C 1.54385 * 104.48688 * 219.57293 * 5 4 2 7 7 H 1.09002 * 110.34590 * 95.02774 * 6 5 4 8 8 N 1.46501 * 110.34265 * 217.17988 * 6 5 4 9 9 C 1.36932 * 120.00202 * 272.12526 * 8 6 5 10 10 H 1.08004 * 120.00142 * 359.97438 * 9 8 6 11 11 C 1.38814 * 120.00464 * 180.02562 * 9 8 6 12 12 N 1.31622 * 119.99375 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00370 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46847 * 59.99943 * 13 11 9 15 15 H 1.48498 * 109.47015 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47218 * 299.99931 * 13 11 9 17 17 C 1.54281 * 105.05132 * 336.10309 * 6 5 4 18 18 C 1.53002 * 110.34627 * 118.92618 * 17 6 5 19 19 C 1.53006 * 110.34372 * 241.08161 * 17 6 5 20 20 C 1.48150 * 127.83389 * 179.97438 * 4 2 1 21 21 H 1.09004 * 109.46941 * 269.99899 * 1 2 3 22 22 H 1.09003 * 109.47682 * 29.99597 * 1 2 3 23 23 H 1.09001 * 109.47393 * 149.99783 * 1 2 3 24 24 H 1.08997 * 110.44874 * 100.83535 * 5 4 2 25 25 H 1.09004 * 110.48780 * 338.32063 * 5 4 2 26 26 H 0.97004 * 119.99809 * 92.11640 * 8 6 5 27 27 H 0.96999 * 119.99854 * 180.02562 * 12 11 9 28 28 H 1.08998 * 109.46945 * 59.99812 * 18 17 6 29 29 H 1.09000 * 109.47393 * 180.02562 * 18 17 6 30 30 H 1.08997 * 109.46826 * 300.00147 * 18 17 6 31 31 H 1.08999 * 109.47065 * 59.99948 * 19 17 6 32 32 H 1.09001 * 109.47278 * 180.02562 * 19 17 6 33 33 H 1.09001 * 109.46875 * 299.99750 * 19 17 6 34 34 H 1.08999 * 110.41112 * 21.63668 * 20 4 2 35 35 H 1.09001 * 110.40746 * 259.20389 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.6207 -2.5416 -0.0020 6 6 2.5413 -3.3349 0.9502 7 1 2.1175 -3.3592 1.9542 8 7 2.7399 -4.6971 0.4491 9 6 1.8600 -5.6883 0.7932 10 1 1.0198 -5.4659 1.4343 11 6 2.0484 -6.9792 0.3188 12 7 3.0726 -7.2503 -0.4622 13 14 0.8485 -8.3314 0.7887 14 1 -0.5129 -7.9710 0.3172 15 1 1.2689 -9.6078 0.1569 16 1 0.8351 -8.4902 2.2652 17 6 3.8774 -2.5635 0.9506 18 6 4.2038 -2.0657 2.3601 19 6 5.0061 -3.4542 0.4275 20 6 3.6485 -1.3692 -0.0011 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 1.6553 -2.9659 -1.0054 25 1 0.5977 -2.5371 0.3746 26 1 3.4946 -4.8969 -0.1266 27 1 3.2041 -8.1522 -0.7940 28 1 4.2845 -2.9167 3.0363 29 1 5.1490 -1.5230 2.3440 30 1 3.4103 -1.4023 2.7040 31 1 4.7779 -3.7694 -0.5907 32 1 5.9423 -2.8961 0.4342 33 1 5.1022 -4.3319 1.0666 34 1 4.1546 -0.4804 0.3755 35 1 3.9985 -1.6104 -1.0048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995278990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:54 Heat of formation + Delta-G solvation = -41.103578 kcal Electronic energy + Delta-G solvation = -16388.002548 eV Core-core repulsion = 13806.536524 eV Total energy + Delta-G solvation = -2581.466024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21497 -39.26000 -35.82165 -34.63000 -32.64786 -30.89857 -29.13346 -28.23974 -26.74940 -25.68382 -23.22933 -20.39090 -19.80553 -19.16422 -17.90910 -17.06282 -16.43965 -16.32996 -15.70454 -15.49266 -15.11181 -14.73071 -14.18085 -13.93436 -13.44629 -13.34505 -13.16052 -13.06720 -12.92772 -12.77783 -12.68125 -12.48740 -12.09955 -12.05348 -11.86604 -11.44588 -11.31702 -10.99661 -10.86898 -9.75852 -8.97341 -7.90545 -5.18787 1.52293 1.53292 1.59371 1.60966 2.03330 2.60204 3.41815 3.46964 3.78328 3.86742 3.94338 4.13414 4.37126 4.42118 4.44418 4.57963 4.61968 4.64796 4.77065 4.85609 4.87196 4.99262 5.02255 5.04425 5.13907 5.17637 5.34075 5.43756 5.51821 5.61076 6.31417 6.61303 7.12703 7.39639 8.13416 8.37736 9.32425 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.007810 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.324229 B = 3584.339124 C = 4117.717304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.522 3.478 3 O -0.602 6.602 4 N -0.618 5.618 5 C 0.088 3.912 6 C 0.168 3.832 7 H 0.060 0.940 8 N -0.726 5.726 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.967 3.033 14 H -0.278 1.278 15 H -0.301 1.301 16 H -0.280 1.280 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.122 4.122 20 C 0.115 3.885 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.383 0.617 27 H 0.250 0.750 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 10.308 2.632 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.314 3.686 3 O -0.485 6.485 4 N -0.351 5.351 5 C -0.038 4.038 6 C 0.058 3.942 7 H 0.078 0.922 8 N -0.369 5.369 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.262 4.262 12 N -0.618 5.618 13 Si 0.797 3.203 14 H -0.204 1.204 15 H -0.227 1.227 16 H -0.207 1.207 17 C -0.083 4.083 18 C -0.182 4.182 19 C -0.180 4.180 20 C -0.008 4.008 21 H 0.129 0.871 22 H 0.120 0.880 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.219 0.781 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.277 10.835 2.707 11.398 hybrid contribution -0.194 -1.205 -0.235 1.242 sum -2.470 9.630 2.473 10.245 Atomic orbital electron populations 1.21893 0.88283 1.05797 1.06150 1.21209 0.91893 0.81062 0.74414 1.90660 1.72089 1.31989 1.53732 1.49224 1.08127 1.06203 1.71555 1.23411 0.99586 0.79761 1.00999 1.21298 0.93202 0.84171 0.95570 0.92200 1.42858 1.31487 1.03683 1.58845 1.19616 1.04905 0.89148 1.23577 0.90333 1.25458 1.00063 0.99721 1.01006 1.69793 1.32133 1.20152 1.39695 0.85310 0.78808 0.78632 0.77576 1.20361 1.22720 1.20678 1.21702 0.95859 0.94410 0.96375 1.21733 1.01614 1.00649 0.94174 1.21577 0.97167 0.98902 1.00368 1.22411 0.81270 0.97794 0.99295 0.87135 0.88033 0.88880 0.91951 0.89137 0.78071 0.94126 0.92647 0.91222 0.93005 0.93592 0.90974 0.93228 0.90321 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.72 71.23 0.69 -2.59 16 2 C 0.52 15.73 8.02 87.65 0.70 16.43 16 3 O -0.60 -22.58 17.37 -3.04 -0.05 -22.63 16 4 N -0.62 -18.74 3.32 -807.19 -2.68 -21.42 16 5 C 0.09 2.78 6.40 86.48 0.55 3.33 16 6 C 0.17 6.03 3.33 45.90 0.15 6.18 16 7 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 8 N -0.73 -33.19 4.61 -318.66 -1.47 -34.66 16 9 C -0.24 -12.29 9.96 84.03 0.84 -11.45 16 10 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 11 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 12 N -0.97 -56.29 13.06 21.65 0.28 -56.01 16 13 Si 0.97 43.87 29.55 68.60 2.03 45.90 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 C -0.08 -2.52 1.03 -51.26 -0.05 -2.57 16 18 C -0.12 -3.36 8.24 71.98 0.59 -2.77 16 19 C -0.12 -3.93 7.11 71.98 0.51 -3.41 16 20 C 0.12 3.47 6.15 86.54 0.53 4.00 16 21 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.09 1.68 7.05 -2.39 -0.02 1.66 16 24 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 25 H 0.09 2.51 7.06 -2.39 -0.02 2.50 16 26 H 0.38 18.76 5.05 -92.71 -0.47 18.29 16 27 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.61 6.95 -2.39 -0.02 1.59 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.82 7.74 -2.39 -0.02 1.80 16 34 H 0.08 2.34 7.60 -2.39 -0.02 2.33 16 35 H 0.07 2.05 7.84 -2.39 -0.02 2.03 16 Total: -1.00 -63.11 284.70 3.70 -59.41 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.60 Total: 25.57 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.99 Total: 3.83 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.87 Total: -112.09 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.11 3.70 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995278990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.309 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds