Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.46623 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99834 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47325 * 59.99531 * 10 8 6 12 12 H 1.48496 * 109.47425 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47183 * 299.99726 * 10 8 6 14 14 N 1.46901 * 109.47052 * 119.99792 * 2 1 3 15 15 C 1.46850 * 110.99875 * 59.21338 * 14 2 1 16 16 C 1.53032 * 109.52110 * 174.16071 * 15 14 2 17 17 C 1.53119 * 109.27994 * 59.18070 * 16 15 14 18 18 C 1.53113 * 109.15904 * 302.34148 * 17 16 15 19 19 H 1.08996 * 109.50816 * 297.71779 * 18 17 16 20 20 N 1.46897 * 109.50352 * 177.59700 * 18 17 16 21 21 C 1.46845 * 110.99910 * 295.00595 * 14 2 1 22 22 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 25 25 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 26 26 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 5 4 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 5 4 2 29 29 H 0.96992 * 120.00032 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46138 * 294.17790 * 15 14 2 31 31 H 1.08994 * 109.46267 * 54.13972 * 15 14 2 32 32 H 1.08998 * 109.50143 * 299.23297 * 16 15 14 33 33 H 1.09004 * 109.53256 * 179.13646 * 16 15 14 34 34 H 1.09001 * 109.52086 * 182.43854 * 17 16 15 35 35 H 1.09002 * 109.57563 * 62.28186 * 17 16 15 36 36 H 1.00902 * 111.00239 * 60.19679 * 20 18 17 37 37 H 1.00903 * 110.99931 * 184.15239 * 20 18 17 38 38 H 1.09002 * 109.46019 * 305.85343 * 21 14 2 39 39 H 1.08991 * 109.46771 * 65.82069 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 6 4.0673 -1.3241 -2.5438 7 1 3.3689 -1.8052 -3.2125 8 6 5.4186 -1.3612 -2.8150 9 7 6.2692 -0.7758 -2.0004 10 14 6.0414 -2.2418 -4.3401 11 1 5.4498 -1.6154 -5.5496 12 1 7.5213 -2.1371 -4.4026 13 1 5.6480 -3.6725 -4.2810 14 7 2.0197 -0.6925 1.1995 15 6 1.5336 -2.0775 1.2429 16 6 2.1777 -2.8088 2.4227 17 6 1.8222 -2.0824 3.7229 18 6 2.2965 -0.6294 3.6325 19 1 3.3809 -0.6065 3.5254 20 7 1.9082 0.0900 4.8530 21 6 1.6488 0.0389 2.4176 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6055 -0.2617 -2.1370 26 1 1.7518 -1.7715 -1.2056 27 1 3.8532 0.4370 -1.3572 28 1 3.9995 -1.0727 -0.4259 29 1 7.2198 -0.8016 -2.1914 30 1 0.4501 -2.0784 1.3627 31 1 1.7965 -2.5839 0.3142 32 1 3.2603 -2.8203 2.2965 33 1 1.8053 -3.8324 2.4642 34 1 2.3145 -2.5748 4.5615 35 1 0.7424 -2.1047 3.8702 36 1 2.3237 -0.3326 5.6696 37 1 2.1502 1.0675 4.7890 38 1 1.9955 1.0696 2.3422 39 1 0.5649 0.0280 2.5319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = -17.019904 kcal Electronic energy + Delta-G solvation = -16514.094111 eV Core-core repulsion = 14069.505528 eV Total energy + Delta-G solvation = -2444.588583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31284 -35.86640 -33.24783 -32.51342 -30.76065 -28.80723 -27.95344 -25.22750 -23.85257 -22.39401 -21.18683 -19.65758 -18.70978 -16.14979 -15.95767 -15.58180 -15.06014 -14.52610 -14.33300 -14.20317 -13.55912 -13.30066 -12.76254 -12.45277 -12.17098 -12.02748 -11.80033 -11.44262 -11.39219 -11.12079 -10.83578 -10.64652 -10.48868 -10.41248 -10.11903 -9.96574 -9.54001 -9.17345 -8.88132 -8.70445 -8.22606 -7.70248 -5.87973 -3.89479 3.38533 3.42841 3.45279 4.11819 4.54153 4.70550 4.92791 5.07041 5.30174 5.39770 5.47245 5.50489 5.60041 5.63435 5.70847 5.76323 5.91257 5.94882 6.05137 6.11115 6.20227 6.20527 6.34478 6.38766 6.43474 6.59078 6.70963 6.91225 7.10667 7.29991 7.38337 7.62989 7.65411 7.85443 8.07806 8.22890 8.57504 9.19410 9.73134 11.22963 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.006483 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.551972 B = 4317.882795 C = 4590.532129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.518 5.518 15 C 0.051 3.949 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.091 3.909 19 H 0.047 0.953 20 N -0.850 5.850 21 C 0.064 3.936 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.009 0.991 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.339 0.661 37 H 0.340 0.660 38 H 0.066 0.934 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -0.111 10.956 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.242 5.242 15 C -0.076 4.076 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.021 4.021 19 H 0.065 0.935 20 N -0.380 5.380 21 C -0.065 4.065 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.672 -0.302 10.758 14.470 hybrid contribution 0.585 -0.193 -0.696 0.930 sum -9.087 -0.496 10.062 13.567 Atomic orbital electron populations 1.22506 0.98921 1.01626 1.01327 1.21848 0.91066 0.98564 0.91019 0.90561 1.21767 1.00816 0.98369 0.93247 1.18992 0.88072 0.96695 0.96941 1.21308 0.91835 1.34114 1.08537 0.93177 1.24993 0.97130 0.95772 0.96472 1.69972 1.02202 1.44288 1.36954 0.86746 0.77584 0.80269 0.83873 1.20416 1.21406 1.20385 1.61975 1.59498 1.01623 1.01058 1.22149 0.96128 0.89804 0.99551 1.21574 1.02219 0.98010 0.93740 1.21565 1.01117 0.94417 0.97626 1.21341 0.97796 0.93654 0.89264 0.93541 1.58711 1.67905 1.06831 1.04503 1.21962 0.97784 0.97284 0.89468 0.92718 0.93373 0.92364 0.93289 0.93205 0.97277 0.95061 0.93194 0.95446 0.89499 0.90778 0.91735 0.92567 0.91900 0.84849 0.84804 0.91537 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.50 37.16 0.32 -2.38 16 2 C 0.08 1.46 2.35 -67.71 -0.16 1.30 16 3 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 4 C -0.10 -2.18 4.44 -26.73 -0.12 -2.30 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 10 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.52 -8.81 4.10 -226.69 -0.93 -9.74 16 15 C 0.05 0.81 4.64 -3.84 -0.02 0.79 16 16 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 17 C -0.11 -1.38 5.58 -26.61 -0.15 -1.53 16 18 C 0.09 1.20 3.41 -67.63 -0.23 0.97 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 N -0.85 -9.23 9.25 -4.60 -0.04 -9.27 16 21 C 0.06 0.93 4.57 -3.83 -0.02 0.92 16 22 H 0.05 0.78 6.52 -51.93 -0.34 0.44 16 23 H 0.05 0.65 6.65 -51.93 -0.35 0.31 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.02 6.05 -51.93 -0.31 0.71 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.41 6.62 -51.93 -0.34 0.06 16 31 H 0.09 1.52 5.93 -51.93 -0.31 1.22 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.34 3.12 9.04 -39.29 -0.36 2.77 16 37 H 0.34 3.32 8.99 -39.29 -0.35 2.96 16 38 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.04 0.54 6.73 -51.93 -0.35 0.19 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -30.48 298.14 -8.72 -39.20 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.87 Total: 2.12 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.09 Total: -17.11 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.23 Total: -45.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.48 -8.72 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.183 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds