Wall clock time and date at job start Sun Mar 29 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.46623 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99834 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47325 * 59.99531 * 10 8 6 12 12 H 1.48496 * 109.47425 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47183 * 299.99726 * 10 8 6 14 14 N 1.46901 * 109.47052 * 119.99792 * 2 1 3 15 15 C 1.46850 * 110.99875 * 59.21338 * 14 2 1 16 16 C 1.53032 * 109.52110 * 174.16071 * 15 14 2 17 17 C 1.53119 * 109.27994 * 59.18070 * 16 15 14 18 18 C 1.53113 * 109.15904 * 302.34148 * 17 16 15 19 19 H 1.08996 * 109.50816 * 297.71779 * 18 17 16 20 20 N 1.46897 * 109.50352 * 177.59700 * 18 17 16 21 21 C 1.46845 * 110.99910 * 295.00595 * 14 2 1 22 22 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 25 25 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 26 26 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 5 4 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 5 4 2 29 29 H 0.96992 * 120.00032 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46138 * 294.17790 * 15 14 2 31 31 H 1.08994 * 109.46267 * 54.13972 * 15 14 2 32 32 H 1.08998 * 109.50143 * 299.23297 * 16 15 14 33 33 H 1.09004 * 109.53256 * 179.13646 * 16 15 14 34 34 H 1.09001 * 109.52086 * 182.43854 * 17 16 15 35 35 H 1.09002 * 109.57563 * 62.28186 * 17 16 15 36 36 H 1.00902 * 111.00239 * 60.19679 * 20 18 17 37 37 H 1.00903 * 110.99931 * 184.15239 * 20 18 17 38 38 H 1.09002 * 109.46019 * 305.85343 * 21 14 2 39 39 H 1.08991 * 109.46771 * 65.82069 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 6 4.0673 -1.3241 -2.5438 7 1 3.3689 -1.8052 -3.2125 8 6 5.4186 -1.3612 -2.8150 9 7 6.2692 -0.7758 -2.0004 10 14 6.0414 -2.2418 -4.3401 11 1 5.4498 -1.6154 -5.5496 12 1 7.5213 -2.1371 -4.4026 13 1 5.6480 -3.6725 -4.2810 14 7 2.0197 -0.6925 1.1995 15 6 1.5336 -2.0775 1.2429 16 6 2.1777 -2.8088 2.4227 17 6 1.8222 -2.0824 3.7229 18 6 2.2965 -0.6294 3.6325 19 1 3.3809 -0.6065 3.5254 20 7 1.9082 0.0900 4.8530 21 6 1.6488 0.0389 2.4176 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6055 -0.2617 -2.1370 26 1 1.7518 -1.7715 -1.2056 27 1 3.8532 0.4370 -1.3572 28 1 3.9995 -1.0727 -0.4259 29 1 7.2198 -0.8016 -2.1914 30 1 0.4501 -2.0784 1.3627 31 1 1.7965 -2.5839 0.3142 32 1 3.2603 -2.8203 2.2965 33 1 1.8053 -3.8324 2.4642 34 1 2.3145 -2.5748 4.5615 35 1 0.7424 -2.1047 3.8702 36 1 2.3237 -0.3326 5.6696 37 1 2.1502 1.0675 4.7890 38 1 1.9955 1.0696 2.3422 39 1 0.5649 0.0280 2.5319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:34 Heat of formation + Delta-G solvation = -38.307617 kcal Electronic energy + Delta-G solvation = -16515.017215 eV Core-core repulsion = 14069.505528 eV Total energy + Delta-G solvation = -2445.511688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56498 -37.17379 -35.18457 -33.80395 -32.43103 -30.34201 -29.04371 -27.06927 -25.23091 -23.56086 -23.05683 -20.97761 -20.04113 -18.35825 -17.29178 -16.63786 -16.49360 -16.12435 -15.63119 -15.43128 -14.87325 -14.64010 -14.51981 -13.86123 -13.68989 -13.31903 -13.24038 -13.14488 -12.79656 -12.68570 -12.50489 -12.35591 -11.87430 -11.72732 -11.67087 -11.37296 -11.17040 -11.12904 -10.89412 -10.48142 -9.64560 -8.98936 -8.13487 -6.24272 1.39878 1.43168 1.50862 2.43754 2.93479 3.18755 3.66820 3.81122 3.96250 4.08113 4.15879 4.28215 4.39037 4.43654 4.44962 4.59835 4.74226 4.78747 4.82174 4.85930 4.94751 5.06214 5.07532 5.10177 5.11850 5.24312 5.31109 5.41055 5.49470 5.59369 5.88228 6.01763 6.14645 6.32445 6.33707 6.40844 6.61810 6.95306 7.43913 8.97680 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.006483 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.551972 B = 4317.882795 C = 4590.532129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.064 0.936 4 C -0.093 4.093 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.267 1.267 14 N -0.543 5.543 15 C 0.053 3.947 16 C -0.115 4.115 17 C -0.101 4.101 18 C 0.095 3.905 19 H 0.023 0.977 20 N -0.844 5.844 21 C 0.068 3.932 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.053 0.947 27 H -0.023 1.023 28 H 0.002 0.998 29 H 0.261 0.739 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.347 0.653 38 H 0.061 0.939 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -0.829 11.168 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.267 5.267 15 C -0.075 4.075 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.017 4.017 19 H 0.041 0.959 20 N -0.375 5.375 21 C -0.060 4.060 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.071 0.929 27 H -0.005 1.005 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.068 -1.019 10.983 15.626 hybrid contribution 1.045 0.059 -0.729 1.276 sum -10.023 -0.960 10.254 14.371 Atomic orbital electron populations 1.22355 0.95950 1.02304 1.02506 1.21659 0.93303 0.97272 0.89895 0.91797 1.21574 0.96811 0.99219 0.95429 1.18795 0.91863 0.93943 0.95016 1.21764 0.92495 1.34401 1.09420 0.92608 1.25950 0.97393 0.96491 0.99964 1.70122 1.02569 1.45602 1.39054 0.85569 0.76982 0.79275 0.79610 1.19252 1.20938 1.19234 1.61906 1.60618 1.02487 1.01736 1.22121 0.97136 0.89033 0.99165 1.21559 1.00507 0.99258 0.93988 1.21502 1.01591 0.93683 0.97168 1.21215 0.96282 0.94450 0.89765 0.95871 1.58678 1.67693 1.07221 1.03904 1.21951 0.98234 0.96893 0.88956 0.92209 0.91902 0.91481 0.92972 0.92864 1.00467 0.97949 0.93045 0.93791 0.91902 0.93305 0.89683 0.90999 0.91147 0.83540 0.84045 0.92019 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.50 71.99 0.61 -4.07 16 2 C 0.09 3.05 2.35 44.92 0.11 3.15 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 C -0.09 -3.92 4.44 30.60 0.14 -3.78 16 5 C 0.04 2.25 4.86 29.85 0.15 2.39 16 6 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 10 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 N -0.54 -18.55 4.10 -871.11 -3.57 -22.12 16 15 C 0.05 1.64 4.64 86.32 0.40 2.04 16 16 C -0.11 -3.13 6.09 30.64 0.19 -2.95 16 17 C -0.10 -2.38 5.58 30.67 0.17 -2.20 16 18 C 0.09 2.41 3.41 44.97 0.15 2.57 16 19 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 20 N -0.84 -16.75 9.25 -168.47 -1.56 -18.31 16 21 C 0.07 1.94 4.57 86.33 0.39 2.33 16 22 H 0.06 1.57 6.52 -2.39 -0.02 1.55 16 23 H 0.06 1.54 6.65 -2.39 -0.02 1.52 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.21 6.05 -2.39 -0.01 2.19 16 27 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 28 H 0.00 0.12 7.75 -2.39 -0.02 0.11 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.04 1.21 6.62 -2.39 -0.02 1.20 16 31 H 0.06 2.23 5.93 -2.39 -0.01 2.21 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.35 5.71 9.04 -89.69 -0.81 4.90 16 37 H 0.35 6.22 8.99 -89.69 -0.81 5.41 16 38 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 39 H 0.04 1.21 6.73 -2.39 -0.02 1.19 16 Total: -1.00 -66.22 298.14 -0.41 -66.63 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.59 Total: 16.54 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.00 Total: -31.77 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.84 Total: -98.84 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.22 -0.41 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.319 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds