Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.46889 * 2 1 4 4 C 1.52997 * 109.47010 * 120.00306 * 2 1 3 5 5 C 1.53006 * 109.47252 * 297.70371 * 4 2 1 6 6 C 1.50700 * 109.46988 * 185.62318 * 5 4 2 7 7 H 1.08000 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99505 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99816 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00295 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47280 * 89.99858 * 10 8 6 12 12 H 1.48500 * 109.47564 * 210.00026 * 10 8 6 13 13 H 1.48497 * 109.47088 * 330.00375 * 10 8 6 14 14 N 1.46899 * 109.47110 * 240.00276 * 2 1 3 15 15 C 1.46843 * 111.00044 * 186.58578 * 14 2 1 16 16 C 1.53039 * 109.52483 * 174.16035 * 15 14 2 17 17 C 1.53121 * 109.27838 * 59.17795 * 16 15 14 18 18 C 1.53127 * 109.15983 * 302.34511 * 17 16 15 19 19 H 1.09000 * 109.50402 * 297.71568 * 18 17 16 20 20 N 1.46897 * 109.50186 * 177.59750 * 18 17 16 21 21 C 1.46848 * 111.00038 * 62.37011 * 14 2 1 22 22 H 1.09005 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46930 * 299.99666 * 1 2 3 24 24 H 1.08994 * 109.47048 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47802 * 57.70651 * 4 2 1 26 26 H 1.09006 * 109.46960 * 177.70422 * 4 2 1 27 27 H 1.09000 * 109.46865 * 305.62383 * 5 4 2 28 28 H 1.08997 * 109.47013 * 65.62180 * 5 4 2 29 29 H 0.97003 * 120.00134 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.46261 * 294.17612 * 15 14 2 31 31 H 1.09005 * 109.46476 * 54.14283 * 15 14 2 32 32 H 1.09004 * 109.50119 * 299.23565 * 16 15 14 33 33 H 1.08999 * 109.53666 * 179.13827 * 16 15 14 34 34 H 1.08999 * 109.52067 * 182.44357 * 17 16 15 35 35 H 1.08998 * 109.57568 * 62.28440 * 17 16 15 36 36 H 1.00902 * 111.00210 * 60.19687 * 20 18 17 37 37 H 1.00903 * 110.99533 * 184.15445 * 20 18 17 38 38 H 1.08995 * 109.46395 * 305.85916 * 21 14 2 39 39 H 1.08996 * 109.45898 * 65.82937 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5777 0.0325 2.4979 6 6 2.1931 -0.5968 3.7211 7 1 2.8481 -1.4494 3.6183 8 6 1.9191 -0.0847 4.9716 9 7 2.4565 -0.6336 6.0391 10 14 0.7858 1.3894 5.1495 11 1 -0.6146 0.9211 5.3074 12 1 1.1819 2.1772 6.3444 13 1 0.8888 2.2420 3.9381 14 7 2.0197 -0.6924 -1.1995 15 6 3.4791 -0.8497 -1.1574 16 6 3.9364 -1.6990 -2.3455 17 6 3.5155 -1.0138 -3.6485 18 6 1.9968 -0.8183 -3.6457 19 1 1.5048 -1.7903 -3.6078 20 7 1.5913 -0.1098 -4.8670 21 6 1.5957 0.0055 -2.4200 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6435 -1.7364 1.2700 26 1 3.1293 -0.7571 1.2288 27 1 1.8897 1.0746 2.4294 28 1 0.4913 -0.0175 2.5710 29 1 2.2641 -0.2731 6.9188 30 1 3.9517 0.1312 -1.2089 31 1 3.7647 -1.3419 -0.2277 32 1 3.4750 -2.6849 -2.2871 33 1 5.0212 -1.8031 -2.3230 34 1 3.8010 -1.6367 -4.4963 35 1 4.0075 -0.0444 -3.7268 36 1 1.8455 -0.6343 -5.6907 37 1 0.6025 0.0910 -4.8570 38 1 0.5135 0.1343 -2.4073 39 1 2.0771 0.9823 -2.4656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = -14.957360 kcal Electronic energy + Delta-G solvation = -16262.482974 eV Core-core repulsion = 13817.983830 eV Total energy + Delta-G solvation = -2444.499144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35400 -36.06205 -33.56044 -32.68698 -31.22584 -28.81976 -28.35321 -25.47491 -24.01694 -22.12887 -21.14158 -19.63512 -19.22995 -16.81401 -15.99133 -15.78535 -15.26453 -14.76847 -14.30082 -14.18486 -13.59311 -13.35274 -13.17368 -12.73113 -12.53560 -12.35877 -11.73121 -11.67392 -11.33695 -11.26806 -10.96996 -10.90760 -10.66889 -10.35323 -10.16516 -9.81142 -9.63499 -9.48884 -9.09578 -8.87673 -8.50539 -8.05164 -6.01650 -3.98998 3.32046 3.39425 3.43214 3.90848 4.47471 4.49888 4.73669 4.87724 5.10154 5.25923 5.32298 5.39152 5.43085 5.55568 5.57708 5.70499 5.82554 5.83845 5.92154 5.95289 6.03143 6.15769 6.21205 6.30888 6.33532 6.50513 6.58591 6.65603 6.92328 6.96823 7.20954 7.33219 7.37947 7.44214 7.51241 7.83896 8.57742 9.03932 9.61282 11.12013 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.047895 B = 0.005679 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.471492 B = 4929.217276 C = 5349.156284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 H 0.035 0.965 4 C -0.097 4.097 5 C -0.012 4.012 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.533 5.533 15 C 0.048 3.952 16 C -0.115 4.115 17 C -0.112 4.112 18 C 0.093 3.907 19 H 0.043 0.957 20 N -0.849 5.849 21 C 0.060 3.940 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.340 0.660 37 H 0.340 0.660 38 H 0.073 0.927 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 0.400 -19.720 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.053 0.947 4 C -0.135 4.135 5 C -0.050 4.050 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.259 5.259 15 C -0.080 4.080 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.018 4.018 19 H 0.061 0.939 20 N -0.379 5.379 21 C -0.069 4.069 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.192 0.524 -19.281 19.325 hybrid contribution -0.835 0.760 0.076 1.132 sum -2.028 1.284 -19.204 19.354 Atomic orbital electron populations 1.21892 0.94836 1.02262 1.01006 1.21787 0.95463 0.95579 0.89928 0.94695 1.21613 1.00040 0.99499 0.92316 1.19606 0.96238 0.95704 0.93479 1.21160 1.29059 1.15818 0.89548 0.91088 1.25028 0.95777 0.96813 0.95894 1.69917 1.44728 1.41556 0.98237 0.86791 0.81373 0.83510 0.77698 1.20283 1.21446 1.19060 1.61920 1.11493 1.50860 1.01586 1.22208 0.87656 0.98701 0.99456 1.21573 1.00330 0.99644 0.93799 1.21596 0.94929 1.00916 0.97581 1.21324 0.95792 0.95257 0.89441 0.93913 1.58670 1.22680 1.52488 1.04100 1.22032 1.00464 0.95215 0.89191 0.92014 0.91591 0.93760 0.92070 0.92452 0.96952 0.96766 0.92805 0.95151 0.89275 0.91225 0.91425 0.92446 0.91594 0.84737 0.84743 0.90891 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.74 37.16 0.32 -1.90 16 2 C 0.08 1.36 2.18 -67.71 -0.15 1.21 16 3 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -1.96 4.30 -26.73 -0.11 -2.07 16 5 C -0.01 -0.30 3.58 -27.88 -0.10 -0.40 16 6 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 7 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 10 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 14 N -0.53 -7.95 4.52 -226.70 -1.03 -8.98 16 15 C 0.05 0.68 5.08 -3.84 -0.02 0.66 16 16 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 17 C -0.11 -1.21 5.58 -26.60 -0.15 -1.36 16 18 C 0.09 1.03 3.41 -67.63 -0.23 0.80 16 19 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 20 N -0.85 -7.83 9.25 -4.60 -0.04 -7.87 16 21 C 0.06 0.78 4.80 -3.83 -0.02 0.76 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 1.09 6.61 -51.93 -0.34 0.74 16 24 H 0.04 0.60 6.33 -51.93 -0.33 0.27 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.17 6.06 -51.93 -0.31 0.85 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 28 H 0.01 0.34 6.21 -51.93 -0.32 0.01 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.37 5.81 -51.93 -0.30 1.07 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.34 2.54 9.04 -39.29 -0.36 2.19 16 37 H 0.34 2.73 8.99 -39.29 -0.35 2.38 16 38 H 0.07 0.92 6.08 -51.93 -0.32 0.60 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -30.55 294.91 -8.39 -38.94 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.82 Total: 0.88 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.05 Total: -17.24 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.29 Total: -44.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.55 -8.39 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.978 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds