Wall clock time and date at job start Sun Mar 29 2020 22:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47054 * 2 1 4 4 C 1.52998 * 109.46798 * 120.00468 * 2 1 3 5 5 C 1.53004 * 109.46938 * 184.02020 * 4 2 1 6 6 C 1.50697 * 109.47338 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00168 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99955 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00210 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47161 * 89.99924 * 10 8 6 12 12 H 1.48498 * 109.47101 * 210.00161 * 10 8 6 13 13 H 1.48500 * 109.46818 * 329.99930 * 10 8 6 14 14 N 1.46900 * 109.46677 * 240.00157 * 2 1 3 15 15 C 1.46842 * 111.00303 * 306.67780 * 14 2 1 16 16 C 1.53039 * 109.52412 * 185.84064 * 15 14 2 17 17 C 1.53120 * 109.28192 * 300.82399 * 16 15 14 18 18 C 1.53117 * 109.15946 * 57.65175 * 17 16 15 19 19 H 1.09004 * 109.50248 * 62.29101 * 18 17 16 20 20 N 1.46899 * 109.50299 * 182.40487 * 18 17 16 21 21 C 1.46842 * 111.00384 * 70.89370 * 14 2 1 22 22 H 1.08994 * 109.47316 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47041 * 299.99912 * 1 2 3 24 24 H 1.09000 * 109.46879 * 59.99409 * 1 2 3 25 25 H 1.08994 * 109.47154 * 304.02227 * 4 2 1 26 26 H 1.08998 * 109.47258 * 64.02154 * 4 2 1 27 27 H 1.08994 * 109.47367 * 300.00076 * 5 4 2 28 28 H 1.09003 * 109.46688 * 60.00306 * 5 4 2 29 29 H 0.96997 * 119.99931 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.46858 * 305.85823 * 15 14 2 31 31 H 1.09004 * 109.46111 * 65.83089 * 15 14 2 32 32 H 1.09000 * 109.50498 * 60.76561 * 16 15 14 33 33 H 1.09003 * 109.50357 * 180.84153 * 16 15 14 34 34 H 1.09000 * 109.52422 * 177.56233 * 17 16 15 35 35 H 1.09000 * 109.51828 * 297.68627 * 17 16 15 36 36 H 1.00898 * 111.00273 * 299.80432 * 20 18 17 37 37 H 1.00906 * 110.99769 * 63.75937 * 20 18 17 38 38 H 1.09006 * 109.46162 * 294.17712 * 21 14 2 39 39 H 1.09009 * 109.46460 * 54.13836 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5666 -0.6344 1.3008 6 6 4.0689 -1.3443 2.5315 7 1 3.3693 -1.8113 3.2090 8 6 5.4216 -1.3978 2.7928 9 7 5.8599 -2.0169 3.8671 10 14 6.6318 -0.5896 1.6216 11 1 6.8592 0.8176 2.0381 12 1 7.9192 -1.3291 1.6520 13 1 6.0789 -0.6147 0.2436 14 7 2.0196 -0.6925 -1.1995 15 6 1.4230 -2.0292 -1.3159 16 6 2.0622 -2.7741 -2.4900 17 6 1.8335 -1.9787 -3.7782 18 6 2.4216 -0.5747 -3.6130 19 1 3.4976 -0.6472 -3.4544 20 7 2.1557 0.2139 -4.8235 21 6 1.7719 0.1065 -2.4064 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6189 -0.2509 2.1377 26 1 1.7366 -1.7677 1.2138 27 1 3.9876 -1.1048 0.4123 28 1 3.8699 0.4120 1.3363 29 1 6.8116 -2.0542 4.0511 30 1 1.5964 -2.5858 -0.3949 31 1 0.3505 -1.9346 -1.4865 32 1 3.1325 -2.8813 -2.3136 33 1 1.6086 -3.7607 -2.5853 34 1 2.3243 -2.4838 -4.6102 35 1 0.7641 -1.9058 -3.9762 36 1 2.5749 -0.2159 -5.6345 37 1 1.1646 0.3483 -4.9571 38 1 0.6978 0.1911 -2.5718 39 1 2.1988 1.1012 -2.2775 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:45 Heat of formation + Delta-G solvation = -37.956569 kcal Electronic energy + Delta-G solvation = -16596.746606 eV Core-core repulsion = 14151.250141 eV Total energy + Delta-G solvation = -2445.496465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60267 -37.27656 -35.17596 -33.78859 -32.64049 -30.62937 -28.89331 -27.19840 -25.20024 -23.50402 -22.73129 -21.17348 -20.16508 -18.79321 -17.30864 -17.03191 -16.32139 -15.68376 -15.50517 -15.14365 -15.08751 -14.69292 -14.63414 -14.08593 -14.01221 -13.53401 -13.25169 -13.20122 -12.84209 -12.73464 -12.32389 -12.02582 -11.82819 -11.74281 -11.65120 -11.38292 -11.34527 -11.30979 -10.99071 -10.71630 -9.57170 -9.02918 -8.26359 -6.28109 1.36186 1.38329 1.53560 2.39549 2.92187 3.10178 3.69945 3.84796 3.93331 4.01732 4.12525 4.25545 4.36944 4.38143 4.42494 4.61401 4.69780 4.71711 4.74098 4.87137 4.91830 5.00874 5.01635 5.07469 5.14594 5.20672 5.26342 5.34040 5.45755 5.59971 5.70971 5.76968 6.21249 6.28675 6.34954 6.37319 6.64717 6.80413 7.36425 8.90693 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.007670 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.232851 B = 3649.706219 C = 4045.459505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.075 0.925 4 C -0.087 4.087 5 C 0.003 3.997 6 C -0.527 4.527 7 H 0.029 0.971 8 C 0.004 3.996 9 N -0.955 5.955 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.248 1.248 14 N -0.543 5.543 15 C 0.052 3.948 16 C -0.114 4.114 17 C -0.141 4.141 18 C 0.096 3.904 19 H 0.066 0.934 20 N -0.845 5.845 21 C 0.069 3.931 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.005 0.995 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.352 0.648 37 H 0.346 0.654 38 H 0.041 0.959 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 2.908 -18.584 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 H 0.093 0.907 4 C -0.125 4.125 5 C -0.034 4.034 6 C -0.566 4.566 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.773 3.227 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.172 1.172 14 N -0.268 5.268 15 C -0.075 4.075 16 C -0.153 4.153 17 C -0.180 4.180 18 C -0.016 4.016 19 H 0.084 0.916 20 N -0.376 5.376 21 C -0.059 4.059 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.059 0.941 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.276 3.406 -18.099 21.090 hybrid contribution -0.460 -0.742 -0.012 0.873 sum -10.735 2.664 -18.111 21.221 Atomic orbital electron populations 1.22356 0.96031 1.02274 1.02561 1.21692 0.93409 0.97532 0.89601 0.90713 1.21407 0.96112 0.99275 0.95697 1.19342 0.94346 0.95018 0.94731 1.21629 0.92403 1.34239 1.08282 0.95267 1.25972 1.00666 0.95739 0.96870 1.70080 1.15047 1.45815 1.28707 0.85666 0.77682 0.78616 0.80753 1.19423 1.21098 1.17195 1.61893 1.59605 1.03079 1.02211 1.22125 0.96494 0.89902 0.98999 1.21526 1.00987 0.98727 0.94059 1.22339 1.01326 0.96640 0.97701 1.21314 0.99642 0.90638 0.89999 0.91599 1.58764 1.19364 1.54131 1.05316 1.21959 0.98288 0.96603 0.89077 0.92316 0.91626 0.91700 0.93108 0.93392 0.95627 0.97654 0.92693 0.92120 0.93675 0.92906 0.90281 0.90927 0.91311 0.83459 0.84093 0.94068 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 8.44 71.98 0.61 -3.66 16 2 C 0.09 2.70 2.32 44.92 0.10 2.80 16 3 H 0.07 2.38 7.97 -2.39 -0.02 2.36 16 4 C -0.09 -3.49 4.55 30.59 0.14 -3.35 16 5 C 0.00 0.15 3.92 29.85 0.12 0.27 16 6 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 7 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 8 C 0.00 0.21 5.47 84.65 0.46 0.68 16 9 N -0.95 -62.01 13.96 21.45 0.30 -61.71 16 10 Si 0.95 46.95 27.47 68.60 1.88 48.83 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.25 -11.73 6.54 99.48 0.65 -11.08 16 14 N -0.54 -16.39 4.01 -871.11 -3.49 -19.88 16 15 C 0.05 1.44 4.52 86.33 0.39 1.83 16 16 C -0.11 -2.72 6.09 30.65 0.19 -2.53 16 17 C -0.14 -2.66 5.57 30.67 0.17 -2.49 16 18 C 0.10 2.11 3.41 44.97 0.15 2.27 16 19 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 20 N -0.85 -14.58 9.26 -168.46 -1.56 -16.14 16 21 C 0.07 1.71 4.69 86.33 0.40 2.11 16 22 H 0.06 1.42 6.45 -2.39 -0.02 1.41 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.38 6.85 -2.39 -0.02 1.36 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.96 6.29 -2.39 -0.02 1.94 16 27 H 0.03 1.28 6.78 -2.39 -0.02 1.27 16 28 H 0.01 0.25 7.57 -2.39 -0.02 0.23 16 29 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 30 H 0.06 1.95 6.18 -2.39 -0.01 1.94 16 31 H 0.05 1.08 6.57 -2.38 -0.02 1.07 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.35 4.88 9.04 -89.70 -0.81 4.07 16 37 H 0.35 4.83 8.98 -89.69 -0.81 4.02 16 38 H 0.04 0.90 6.90 -2.38 -0.02 0.88 16 39 H 0.07 1.81 8.01 -2.38 -0.02 1.79 16 Total: -1.00 -68.01 294.97 -0.53 -68.54 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.65 Total: 13.94 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 2.98 Total: -33.58 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.75 Total: -97.73 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.83 kcal Total: -68.01 -0.53 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.584 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds