Wall clock time and date at job start Sun Mar 29 2020 21:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00014 * 2 1 4 4 H 1.08008 * 119.99848 * 203.04626 * 3 2 1 5 5 C 1.38806 * 120.00367 * 23.04554 * 3 2 1 6 6 N 1.31622 * 119.99919 * 12.92560 * 5 3 2 7 7 Si 1.86799 * 120.00236 * 192.92865 * 5 3 2 8 8 H 1.48501 * 109.47008 * 59.99812 * 7 5 3 9 9 H 1.48500 * 109.47210 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47085 * 299.99759 * 7 5 3 11 11 C 1.46506 * 119.99747 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46798 * 90.00290 * 11 2 1 13 13 C 1.53004 * 109.47182 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.47045 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99472 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00516 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99834 * 180.02562 * 15 14 13 18 18 C 1.52998 * 117.49738 * 248.62253 * 17 15 14 19 19 C 1.53001 * 117.50011 * 179.97438 * 17 15 14 20 20 H 1.08997 * 109.47317 * 275.12627 * 1 2 3 21 21 H 1.08998 * 109.47025 * 35.12473 * 1 2 3 22 22 H 1.08998 * 109.46889 * 155.12262 * 1 2 3 23 23 H 0.97003 * 120.00259 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47084 * 330.00367 * 11 2 1 25 25 H 1.08994 * 109.47158 * 209.99982 * 11 2 1 26 26 H 1.09001 * 109.47241 * 60.00172 * 12 11 2 27 27 H 1.08997 * 109.47497 * 299.99775 * 12 11 2 28 28 H 1.08997 * 109.46983 * 300.00411 * 13 12 11 29 29 H 1.09001 * 109.46630 * 60.00119 * 13 12 11 30 30 H 0.97000 * 120.00254 * 0.02562 * 14 13 12 31 31 H 1.09003 * 115.54935 * 34.32699 * 17 15 14 32 32 H 1.08994 * 117.50153 * 359.97438 * 18 17 15 33 33 H 1.09004 * 117.49820 * 145.02056 * 18 17 15 34 34 H 1.08998 * 117.50260 * 214.97750 * 19 17 15 35 35 H 1.08998 * 117.50008 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3400 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3160 4.0073 0.1455 8 1 2.4197 4.2279 -1.3193 9 1 1.4738 5.0719 0.7476 10 1 3.6721 4.0474 0.7494 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2180 -3.0358 -1.4412 14 7 3.4616 -3.4595 -2.8223 15 6 4.1240 -4.6072 -3.0681 16 8 4.5180 -5.2895 -2.1460 17 6 4.3752 -5.0429 -4.4887 18 6 3.6315 -6.2827 -4.9893 19 6 5.1330 -6.3548 -4.7019 20 1 -0.3634 0.0918 1.0235 21 1 -0.3633 0.8405 -0.5913 22 1 -0.3633 -0.9323 -0.4323 23 1 -0.0153 3.0663 1.4743 24 1 1.6083 -2.0282 0.5147 25 1 3.1499 -1.1383 0.5143 26 1 3.0416 -0.9516 -1.9559 27 1 1.5001 -1.8416 -1.9556 28 1 4.1704 -2.9049 -0.9275 29 1 2.6292 -3.7954 -0.9270 30 1 3.1462 -2.9141 -3.5598 31 1 4.5511 -4.2385 -5.2030 32 1 2.9610 -6.7835 -4.2911 33 1 3.3179 -6.2942 -6.0332 34 1 5.8068 -6.4137 -5.5566 35 1 5.4504 -6.9026 -3.8146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231065085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:46 Heat of formation + Delta-G solvation = 0.106828 kcal Electronic energy + Delta-G solvation = -15165.985497 eV Core-core repulsion = 12586.306490 eV Total energy + Delta-G solvation = -2579.679007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89581 -36.71217 -35.94291 -34.68578 -32.00182 -29.99930 -26.23518 -25.71341 -23.77871 -22.65341 -21.73903 -20.61533 -19.71322 -17.46548 -16.71600 -15.93938 -15.52748 -14.99017 -14.84338 -14.18158 -13.91119 -13.37951 -12.91718 -12.69447 -12.63244 -11.79802 -11.70294 -11.44736 -11.01590 -10.85656 -10.78523 -10.77765 -10.70365 -10.48680 -10.20536 -9.89129 -9.80649 -9.79326 -8.96001 -8.53516 -6.73134 -5.71032 -3.18322 2.48109 3.18440 3.39223 3.44366 3.45281 3.68359 4.50385 4.53593 4.63758 4.67184 4.97560 5.24183 5.34917 5.43974 5.46281 5.52967 5.71301 5.82723 5.90073 5.91140 6.11102 6.20051 6.42259 6.58806 6.75424 6.77204 6.94626 7.38052 7.56726 7.74078 7.81164 8.26133 8.41509 9.25214 9.88799 10.38016 11.33765 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051028 B = 0.004332 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.588969 B = 6462.170560 C = 6685.745313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.722 5.722 15 C 0.538 3.462 16 O -0.547 6.547 17 C -0.195 4.195 18 C -0.154 4.154 19 C -0.149 4.149 20 H 0.031 0.969 21 H 0.039 0.961 22 H -0.003 1.003 23 H 0.253 0.747 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.401 0.599 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -12.833 -11.921 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.372 5.372 15 C 0.324 3.676 16 O -0.425 6.425 17 C -0.216 4.216 18 C -0.191 4.191 19 C -0.187 4.187 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.016 0.984 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.987 -13.146 -11.126 17.930 hybrid contribution 0.161 1.411 -0.579 1.533 sum 5.148 -11.735 -11.705 17.356 Atomic orbital electron populations 1.20787 0.82675 0.95292 0.99470 1.43887 1.01846 1.00665 1.86179 1.19147 0.98274 0.85676 1.35559 0.91494 1.25031 0.97908 0.98553 0.98172 1.70063 1.19443 1.27294 1.38530 0.86332 0.78485 0.83813 0.77883 1.21128 1.21624 1.20904 1.20599 0.96363 0.88512 0.91849 1.22528 0.99451 0.94194 1.02911 1.21472 1.00400 0.96974 0.81565 1.46079 1.57601 1.23715 1.09854 1.19662 0.77476 0.80838 0.89669 1.90686 1.51445 1.54295 1.46033 1.22231 1.09369 0.94081 0.95922 1.22935 0.95666 0.98300 1.02222 1.22944 0.94424 0.97471 1.03842 0.95087 0.94179 0.98422 0.93707 0.94413 0.93271 0.91557 0.92223 0.91631 0.91832 0.76491 0.85913 0.88264 0.87850 0.88031 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.85 0.54 4.57 16 2 N -0.60 -15.26 2.92 -181.12 -0.53 -15.79 16 3 C -0.26 -7.09 9.65 -15.06 -0.15 -7.24 16 4 H 0.07 1.80 7.86 -52.48 -0.41 1.38 16 5 C 0.00 0.04 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.74 10.71 55.49 0.59 -26.14 16 7 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.16 3.16 5.64 -4.04 -0.02 3.13 16 12 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 13 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 14 N -0.72 -9.26 5.56 -60.29 -0.33 -9.60 16 15 C 0.54 7.35 7.61 -10.99 -0.08 7.26 16 16 O -0.55 -9.59 16.26 5.56 0.09 -9.50 16 17 C -0.19 -1.90 6.19 -91.77 -0.57 -2.47 16 18 C -0.15 -1.27 10.24 -26.71 -0.27 -1.54 16 19 C -0.15 -1.33 10.05 -26.70 -0.27 -1.60 16 20 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 21 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 22 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 31 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -32.13 297.40 -7.50 -39.64 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.69 Total: -1.12 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.09 Total: 1.18 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.27 Total: -51.53 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.13 -7.50 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231065085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.743 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds