Wall clock time and date at job start Sun Mar 29 2020 22:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 H 1.08993 * 109.47422 * 185.31041 * 3 2 1 5 5 C 1.50703 * 109.47183 * 305.31744 * 3 2 1 6 6 H 1.07997 * 120.00134 * 119.99854 * 5 3 2 7 7 C 1.37869 * 119.99781 * 299.99694 * 5 3 2 8 8 N 1.31515 * 120.00222 * 180.27698 * 7 5 3 9 9 Si 1.86805 * 120.00317 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46873 * 89.99584 * 9 7 5 11 11 H 1.48492 * 109.47226 * 209.99790 * 9 7 5 12 12 H 1.48502 * 109.46719 * 330.00390 * 9 7 5 13 13 N 1.46909 * 109.46788 * 65.31280 * 3 2 1 14 14 C 1.46900 * 110.99599 * 86.56767 * 13 3 2 15 15 C 1.53000 * 109.47033 * 174.80805 * 14 13 3 16 16 N 1.46897 * 110.01801 * 59.29690 * 15 14 13 17 17 C 1.54267 * 110.03208 * 297.90588 * 15 14 13 18 18 C 1.54959 * 104.16110 * 217.13513 * 17 15 14 19 19 C 1.54891 * 102.77748 * 37.88929 * 18 17 15 20 20 C 1.53872 * 110.03268 * 180.68895 * 15 14 13 21 21 H 1.09000 * 109.46924 * 183.13840 * 1 2 3 22 22 H 1.08998 * 109.46981 * 303.13650 * 1 2 3 23 23 H 1.08994 * 109.47553 * 63.13854 * 1 2 3 24 24 H 1.08993 * 109.46769 * 240.00146 * 2 1 3 25 25 H 1.09001 * 109.46931 * 119.99971 * 2 1 3 26 26 H 0.96997 * 120.00788 * 179.72594 * 8 7 5 27 27 H 1.00893 * 111.00268 * 322.61034 * 13 3 2 28 28 H 1.08998 * 109.47076 * 294.80876 * 14 13 3 29 29 H 1.09001 * 109.47216 * 54.80961 * 14 13 3 30 30 H 1.00907 * 111.00244 * 300.70610 * 16 15 14 31 31 H 1.00904 * 111.00079 * 64.65187 * 16 15 14 32 32 H 1.09000 * 110.48631 * 335.78673 * 17 15 14 33 33 H 1.09005 * 110.48319 * 98.42681 * 17 15 14 34 34 H 1.08999 * 110.71917 * 279.57157 * 18 17 15 35 35 H 1.08997 * 110.92426 * 156.29785 * 18 17 15 36 36 H 1.09001 * 110.48655 * 203.40698 * 19 18 17 37 37 H 1.09000 * 110.48553 * 80.76150 * 19 18 17 38 38 H 1.09002 * 110.03257 * 238.56935 * 20 15 14 39 39 H 1.08998 * 110.03543 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4440 -0.0951 5 6 1.4331 2.1899 -1.1593 6 1 0.8244 3.0637 -0.9793 7 6 1.6549 1.7583 -2.4498 8 7 1.1297 2.4136 -3.4619 9 14 2.7072 0.2465 -2.7612 10 1 1.8458 -0.9631 -2.7690 11 1 3.3870 0.3786 -4.0748 12 1 3.7252 0.1223 -1.6872 13 7 1.6578 2.0969 1.2585 14 6 2.6570 1.8476 2.3061 15 6 2.2933 2.6475 3.5585 16 7 0.9619 2.2533 4.0380 17 6 2.3165 4.1581 3.2461 18 6 2.8887 4.8028 4.5338 19 6 3.9668 3.7831 4.9775 20 6 3.3418 2.4091 4.6592 21 1 -0.3633 -1.0261 0.0563 22 1 -0.3633 0.5618 0.8605 23 1 -0.3634 0.4643 -0.9167 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.2890 2.1123 -4.3700 27 1 0.7404 1.8008 1.5560 28 1 2.6742 0.7845 2.5461 29 1 3.6404 2.1558 1.9510 30 1 0.2605 2.4142 3.3306 31 1 0.9567 1.2904 4.3397 32 1 2.9675 4.3618 2.3959 33 1 1.3079 4.5229 3.0516 34 1 2.1132 4.9003 5.2936 35 1 3.3390 5.7714 4.3171 36 1 4.1621 3.8750 6.0460 37 1 4.8847 3.9260 4.4073 38 1 2.8626 2.0016 5.5494 39 1 4.1101 1.7239 4.3010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246075179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:24 Heat of formation + Delta-G solvation = -32.371816 kcal Electronic energy + Delta-G solvation = -16673.559239 eV Core-core repulsion = 14228.304947 eV Total energy + Delta-G solvation = -2445.254292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17287 -38.07788 -34.68703 -33.68024 -32.08312 -29.59143 -29.13738 -27.82871 -25.09989 -24.50718 -21.65759 -21.26823 -19.97726 -18.52618 -17.12253 -16.96399 -16.53916 -16.09001 -15.59751 -15.33864 -15.01924 -14.79162 -14.57884 -14.15562 -13.80733 -13.38225 -13.00389 -12.75652 -12.50035 -12.31505 -12.14546 -11.90983 -11.84392 -11.80487 -11.75716 -11.52796 -11.33405 -11.28081 -11.14168 -10.70168 -9.59710 -8.98270 -8.25706 -6.25166 1.26310 1.31521 1.40273 2.30890 3.08863 3.34203 3.64436 3.84546 3.93326 4.07990 4.20252 4.25447 4.34017 4.42025 4.55160 4.66463 4.70832 4.77227 4.86362 4.92748 5.00424 5.04132 5.11778 5.14131 5.17034 5.23770 5.26455 5.35711 5.43403 5.52311 5.59232 5.70573 6.02415 6.35844 6.64677 6.67841 6.73631 6.80726 7.38094 8.91677 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.007156 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.938853 B = 3911.729694 C = 4056.160449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.156 4.156 3 C 0.192 3.808 4 H 0.019 0.981 5 C -0.485 4.485 6 H 0.037 0.963 7 C 0.015 3.985 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.256 1.256 13 N -0.675 5.675 14 C 0.034 3.966 15 C 0.124 3.876 16 N -0.832 5.832 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.110 4.110 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.340 0.660 31 H 0.342 0.658 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -3.282 16.783 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.195 4.195 3 C 0.082 3.918 4 H 0.037 0.963 5 C -0.524 4.524 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.229 1.229 12 H -0.180 1.180 13 N -0.307 5.307 14 C -0.097 4.097 15 C 0.031 3.969 16 N -0.363 5.363 17 C -0.135 4.135 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.149 4.149 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.099 16.998 17.642 hybrid contribution 0.130 -2.093 -1.669 2.680 sum 4.364 -4.192 15.329 16.480 Atomic orbital electron populations 1.21527 0.94787 1.00479 1.01815 1.22415 0.98111 0.99363 0.99629 1.19437 0.94594 0.89227 0.88558 0.96337 1.21102 1.29876 1.11399 0.89974 0.94481 1.25646 0.96937 0.99662 0.95967 1.70030 1.47357 1.42413 0.99329 0.85985 0.79856 0.80562 0.76721 1.19304 1.22851 1.18037 1.60441 1.04772 1.62684 1.02836 1.22881 0.96287 0.97251 0.93304 1.21435 0.89718 0.94706 0.91037 1.59095 1.05090 1.27792 1.44278 1.22161 1.00464 0.93702 0.97188 1.22452 0.98155 0.98078 0.96767 1.22301 0.97827 0.93941 1.01468 1.22194 0.96752 0.98176 0.97752 0.92342 0.92259 0.94142 0.94532 0.92084 0.92777 0.84673 0.95701 0.92529 0.84655 0.84507 0.93194 0.92787 0.91318 0.91619 0.90327 0.91858 0.90244 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.39 71.98 0.68 -4.13 16 2 C -0.16 -6.23 5.22 30.59 0.16 -6.07 16 3 C 0.19 8.67 1.93 44.17 0.09 8.76 16 4 H 0.02 0.90 6.75 -2.39 -0.02 0.88 16 5 C -0.48 -27.21 7.98 25.60 0.20 -27.00 16 6 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 7 C 0.01 0.84 5.40 84.65 0.46 1.30 16 8 N -0.95 -59.42 13.96 21.44 0.30 -59.12 16 9 Si 0.94 45.01 24.32 68.60 1.67 46.68 16 10 H -0.27 -12.14 6.92 99.48 0.69 -11.45 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.26 -11.49 6.53 99.48 0.65 -10.84 16 13 N -0.68 -25.68 5.80 -495.43 -2.88 -28.56 16 14 C 0.03 1.07 4.29 86.30 0.37 1.44 16 15 C 0.12 3.23 0.94 4.25 0.00 3.23 16 16 N -0.83 -19.66 8.69 -148.72 -1.29 -20.95 16 17 C -0.10 -2.78 5.76 31.69 0.18 -2.60 16 18 C -0.12 -2.66 6.91 31.91 0.22 -2.44 16 19 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 20 C -0.11 -2.36 6.20 31.32 0.19 -2.16 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.06 1.97 6.33 -2.39 -0.02 1.96 16 23 H 0.04 1.80 7.15 -2.39 -0.02 1.78 16 24 H 0.04 1.55 3.42 -2.39 -0.01 1.55 16 25 H 0.06 2.08 7.55 -2.39 -0.02 2.06 16 26 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.33 11.69 5.03 -89.70 -0.45 11.24 16 28 H 0.02 0.73 7.58 -2.39 -0.02 0.71 16 29 H 0.06 1.92 7.91 -2.39 -0.02 1.90 16 30 H 0.34 8.65 7.44 -89.69 -0.67 7.98 16 31 H 0.34 6.94 9.01 -89.69 -0.81 6.13 16 32 H 0.05 1.64 7.84 -2.39 -0.02 1.62 16 33 H 0.05 1.69 8.02 -2.38 -0.02 1.67 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.56 7.91 -2.39 -0.02 1.54 16 39 H 0.06 1.34 7.67 -2.39 -0.02 1.33 16 Total: -1.00 -62.77 290.86 -0.39 -63.16 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.96 Total: 30.59 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 2.77 Total: -31.81 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.87 Total: -108.63 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.68 kcal Total: -62.77 -0.39 -63.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246075179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.792 kcal (2) G-P(sol) polarization free energy of solvation -62.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds