Wall clock time and date at job start Sun Mar 29 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53006 * 109.47116 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47515 * 185.00209 * 4 2 1 6 6 C 1.50699 * 109.47396 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99599 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99932 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99923 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99906 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47023 * 89.99686 * 10 8 6 12 12 H 1.48496 * 109.47306 * 210.00281 * 10 8 6 13 13 H 1.48501 * 109.47025 * 330.00203 * 10 8 6 14 14 N 1.46903 * 109.47645 * 239.99304 * 2 1 3 15 15 C 1.46904 * 110.99386 * 84.22954 * 14 2 1 16 16 C 1.53120 * 109.52155 * 205.80711 * 15 14 2 17 17 C 1.53039 * 109.27674 * 182.50714 * 16 15 14 18 18 N 1.46844 * 109.57514 * 59.08338 * 17 16 15 19 19 C 1.46849 * 111.20116 * 298.29072 * 18 17 16 20 20 C 1.53039 * 109.51954 * 61.74128 * 19 18 17 21 21 H 1.09005 * 109.46962 * 64.70470 * 1 2 3 22 22 H 1.09006 * 109.46956 * 184.70324 * 1 2 3 23 23 H 1.08996 * 109.47160 * 304.70286 * 1 2 3 24 24 H 1.09007 * 109.46898 * 305.00235 * 4 2 1 25 25 H 1.09002 * 109.47068 * 64.99796 * 4 2 1 26 26 H 1.08994 * 109.47258 * 300.00218 * 5 4 2 27 27 H 1.09003 * 109.46837 * 59.99443 * 5 4 2 28 28 H 0.97005 * 119.99266 * 179.97438 * 9 8 6 29 29 H 1.00899 * 111.00001 * 208.18413 * 14 2 1 30 30 H 1.08997 * 109.52349 * 325.93438 * 15 14 2 31 31 H 1.09006 * 109.50154 * 302.38625 * 16 15 14 32 32 H 1.09000 * 109.50152 * 62.49862 * 16 15 14 33 33 H 1.08994 * 109.40909 * 299.06663 * 17 16 15 34 34 H 1.09002 * 109.45500 * 179.12630 * 17 16 15 35 35 H 1.00898 * 110.99926 * 62.38702 * 18 17 16 36 36 H 1.08997 * 109.46222 * 301.72863 * 19 18 17 37 37 H 1.08994 * 109.45687 * 181.74918 * 19 18 17 38 38 H 1.09004 * 109.50124 * 180.88668 * 20 19 18 39 39 H 1.08993 * 109.53944 * 60.78396 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3139 6 6 4.0670 -1.3230 2.5447 7 1 3.3684 -1.8027 3.2142 8 6 5.4182 -1.3590 2.8166 9 7 6.2687 -0.7735 2.0021 10 14 6.0407 -2.2382 4.3428 11 1 6.3212 -3.6593 4.0155 12 1 7.2866 -1.5843 4.8173 13 1 5.0091 -2.1701 5.4087 14 7 2.0198 -0.6926 -1.1993 15 6 2.0653 0.2179 -2.3513 16 6 1.9403 -0.5891 -3.6466 17 6 2.0511 0.3574 -4.8441 18 7 3.3426 1.0550 -4.8020 19 6 3.4644 1.8742 -3.5894 20 6 3.3974 0.9728 -2.3545 21 1 -0.3633 0.4391 -0.9292 22 1 -0.3633 -1.0243 0.0843 23 1 -0.3633 0.5850 0.8448 24 1 1.6053 -0.2616 2.1371 25 1 1.7516 -1.7715 1.2058 26 1 3.9995 -1.0727 0.4263 27 1 3.8531 0.4371 1.3574 28 1 7.2193 -0.7986 2.1937 29 1 2.9231 -1.1099 -1.0323 30 1 1.2430 0.9303 -2.2852 31 1 2.7398 -1.3286 -3.6931 32 1 0.9748 -1.0943 -3.6688 33 1 1.2426 1.0873 -4.8049 34 1 1.9781 -0.2162 -5.7681 35 1 4.1086 0.4024 -4.8760 36 1 2.6493 2.5970 -3.5561 37 1 4.4178 2.4022 -3.6023 38 1 3.4721 1.5828 -1.4542 39 1 4.2204 0.2586 -2.3794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246080474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:06 Heat of formation + Delta-G solvation = -48.815399 kcal Electronic energy + Delta-G solvation = -16266.506882 eV Core-core repulsion = 13820.539543 eV Total energy + Delta-G solvation = -2445.967339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26049 -37.87743 -35.27336 -33.46812 -31.77870 -31.19995 -29.10780 -27.03837 -24.03096 -23.74945 -23.06643 -21.39217 -20.97095 -18.54571 -17.31221 -16.83589 -16.56328 -15.61792 -15.59591 -15.16955 -14.94255 -14.65394 -14.42689 -14.19601 -13.55256 -13.29244 -13.17415 -13.13246 -12.86548 -12.61822 -12.50761 -12.38677 -12.20848 -11.98839 -11.75917 -11.50027 -11.48934 -11.27723 -10.97224 -10.57280 -9.46797 -9.20567 -8.22902 -6.33666 1.37830 1.38747 1.49877 2.38548 3.09741 3.17616 3.44333 3.72878 3.95695 4.07936 4.16661 4.26046 4.33163 4.39746 4.42232 4.50037 4.66663 4.73304 4.79878 4.94939 4.96502 4.98994 5.00733 5.05504 5.09320 5.18190 5.24018 5.30153 5.41463 5.50815 5.68196 5.81038 6.06312 6.22068 6.25964 6.41004 6.44128 6.82556 7.35650 8.88301 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.006175 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.870499 B = 4533.158257 C = 5125.402121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.025 0.975 4 C -0.103 4.103 5 C 0.032 3.968 6 C -0.544 4.544 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.684 5.684 15 C 0.090 3.910 16 C -0.135 4.135 17 C 0.062 3.938 18 N -0.688 5.688 19 C 0.069 3.931 20 C -0.181 4.181 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.054 0.946 26 H -0.003 1.003 27 H -0.018 1.018 28 H 0.263 0.737 29 H 0.335 0.665 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.343 0.657 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 2.883 -11.254 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.043 0.957 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.189 1.189 14 N -0.315 5.315 15 C -0.020 4.020 16 C -0.175 4.175 17 C -0.068 4.068 18 N -0.316 5.316 19 C -0.062 4.062 20 C -0.222 4.222 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.000 1.000 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.161 0.839 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.775 3.188 -11.830 15.674 hybrid contribution 1.803 -0.530 1.963 2.718 sum -7.972 2.658 -9.867 12.961 Atomic orbital electron populations 1.21715 0.93154 1.02091 1.01514 1.21519 0.96316 0.94882 0.89534 0.95680 1.21654 0.96252 0.99766 0.96373 1.18953 0.92015 0.94278 0.95317 1.21690 0.92579 1.34660 1.09306 0.92450 1.25944 0.97321 0.96277 1.00058 1.70090 1.02719 1.45237 1.39038 0.85477 0.77801 0.78620 0.79344 1.19752 1.20735 1.18856 1.60835 1.32965 1.33214 1.04497 1.21658 0.95688 0.93314 0.91310 1.22192 1.02733 0.98511 0.94063 1.22072 0.91792 0.95859 0.97120 1.60737 1.05188 1.28140 1.37522 1.21898 1.02688 0.95293 0.86291 1.22924 0.98825 1.00202 1.00233 0.92179 0.92401 0.91975 0.92586 0.92748 0.98491 0.99978 0.92847 0.84485 0.90458 0.92995 0.90524 0.90493 0.89016 0.83950 0.90362 0.90637 0.93622 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.41 71.98 0.68 -2.86 16 2 C 0.09 3.03 2.47 44.92 0.11 3.14 16 3 H 0.03 0.93 7.22 -2.39 -0.02 0.91 16 4 C -0.10 -4.30 4.75 30.60 0.15 -4.15 16 5 C 0.03 1.66 4.80 29.85 0.14 1.81 16 6 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 10 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 14 N -0.68 -22.93 6.06 -469.04 -2.84 -25.78 16 15 C 0.09 2.51 2.32 44.99 0.10 2.61 16 16 C -0.14 -3.12 5.69 30.65 0.17 -2.94 16 17 C 0.06 1.18 6.55 86.33 0.57 1.74 16 18 N -0.69 -14.69 6.87 -514.01 -3.53 -18.22 16 19 C 0.07 1.62 6.55 86.33 0.57 2.19 16 20 C -0.18 -5.32 5.33 30.65 0.16 -5.15 16 21 H 0.06 1.49 7.33 -2.38 -0.02 1.47 16 22 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.00 -0.17 6.42 -2.39 -0.02 -0.19 16 27 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 29 H 0.34 13.12 6.18 -89.69 -0.55 12.57 16 30 H 0.08 2.07 7.05 -2.39 -0.02 2.05 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.34 7.14 8.86 -89.70 -0.79 6.34 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.54 7.53 -2.39 -0.02 1.52 16 39 H 0.05 1.54 8.09 -2.39 -0.02 1.52 16 Total: -1.00 -61.87 303.81 -1.06 -62.93 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.34 Total: 24.96 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.35 Total: -34.13 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -6.09 Total: -100.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.87 -1.06 -62.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246080474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.113 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds