Wall clock time and date at job start Sun Mar 29 2020 22:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46815 * 2 1 4 4 C 1.52997 * 109.46819 * 239.99736 * 2 1 3 5 5 C 1.53007 * 109.46727 * 174.99726 * 4 2 1 6 6 C 1.50698 * 109.47129 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99729 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00053 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99898 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.46986 * 89.99742 * 10 8 6 12 12 H 1.48496 * 109.47032 * 209.99956 * 10 8 6 13 13 H 1.48496 * 109.47114 * 329.99850 * 10 8 6 14 14 N 1.46899 * 109.46828 * 119.99947 * 2 1 3 15 15 C 1.46905 * 110.99706 * 273.69602 * 14 2 1 16 16 H 1.08997 * 109.50335 * 347.07762 * 15 14 2 17 17 C 1.53208 * 109.49040 * 226.97809 * 15 14 2 18 18 C 1.53121 * 109.11256 * 182.42160 * 17 15 14 19 19 C 1.53034 * 109.31152 * 57.64045 * 18 17 15 20 20 N 1.46851 * 109.52100 * 300.80027 * 19 18 17 21 21 C 1.46844 * 111.20177 * 61.73935 * 20 19 18 22 22 H 1.09000 * 109.46861 * 181.51011 * 1 2 3 23 23 H 1.08996 * 109.47014 * 301.50811 * 1 2 3 24 24 H 1.09002 * 109.46887 * 61.51192 * 1 2 3 25 25 H 1.08993 * 109.47387 * 294.99820 * 4 2 1 26 26 H 1.09004 * 109.47467 * 55.00555 * 4 2 1 27 27 H 1.08993 * 109.47264 * 300.00170 * 5 4 2 28 28 H 1.09002 * 109.46853 * 60.00585 * 5 4 2 29 29 H 0.97002 * 119.99942 * 180.02562 * 9 8 6 30 30 H 1.00899 * 111.00259 * 37.65255 * 14 2 1 31 31 H 1.08994 * 109.57393 * 62.51344 * 17 15 14 32 32 H 1.09000 * 109.51188 * 302.29905 * 17 15 14 33 33 H 1.08995 * 109.50391 * 297.67372 * 18 17 15 34 34 H 1.09002 * 109.49439 * 177.59505 * 18 17 15 35 35 H 1.09004 * 109.46313 * 60.80990 * 19 18 17 36 36 H 1.08998 * 109.46271 * 180.77914 * 19 18 17 37 37 H 1.00903 * 110.99592 * 297.64429 * 20 19 18 38 38 H 1.08999 * 109.46176 * 58.27420 * 21 20 19 39 39 H 1.08996 * 109.46004 * 178.24240 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0673 -1.3242 -2.5437 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3614 -2.8150 9 7 6.2691 -0.7758 -2.0004 10 14 6.0413 -2.2421 -4.3402 11 1 6.0918 -1.2878 -5.4768 12 1 7.4023 -2.7769 -4.0819 13 1 5.1247 -3.3616 -4.6741 14 7 2.0197 -0.6925 1.1995 15 6 2.1118 0.2299 2.3391 16 1 2.0174 1.2564 1.9850 17 6 3.4653 0.0504 3.0340 18 6 3.5280 0.9718 4.2553 19 6 2.3639 0.6475 5.1942 20 7 1.0929 0.8350 4.4829 21 6 0.9886 -0.0728 3.3335 22 1 -0.3633 -1.0273 0.0271 23 1 -0.3633 0.5371 0.8761 24 1 -0.3633 0.4902 -0.9033 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1370 27 1 3.8532 0.4369 -1.3574 28 1 3.9995 -1.0728 -0.4259 29 1 7.2198 -0.8016 -2.1914 30 1 1.4371 -1.4856 1.4223 31 1 4.2677 0.3071 2.3424 32 1 3.5761 -0.9859 3.3533 33 1 3.4564 2.0102 3.9318 34 1 4.4716 0.8180 4.7790 35 1 2.4439 -0.3870 5.5281 36 1 2.3982 1.3115 6.0580 37 1 0.9771 1.7957 4.1966 38 1 1.0752 -1.1040 3.6761 39 1 0.0241 0.0680 2.8458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246355264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:53 Heat of formation + Delta-G solvation = -24.950868 kcal Electronic energy + Delta-G solvation = -16189.685810 eV Core-core repulsion = 13744.753314 eV Total energy + Delta-G solvation = -2444.932495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16634 -36.46042 -33.23122 -31.85626 -31.32571 -29.26015 -27.44722 -25.00756 -23.54116 -22.23280 -21.26205 -20.50020 -19.53181 -16.10147 -16.05603 -15.42185 -15.20271 -14.62424 -14.39040 -13.70566 -13.59996 -13.29866 -12.71864 -12.42625 -12.29703 -12.11492 -11.93292 -11.50747 -11.28290 -11.15388 -11.09234 -10.86024 -10.67340 -10.63273 -10.41041 -9.97968 -9.62053 -9.22214 -8.88375 -8.69809 -8.21304 -7.67676 -5.87526 -3.88504 3.37618 3.43643 3.47248 4.14351 4.53263 4.54972 4.84998 5.02695 5.05993 5.20031 5.32662 5.40553 5.44255 5.48019 5.56473 5.63629 5.69505 5.81483 5.91235 5.99209 6.10487 6.12380 6.27175 6.38229 6.44465 6.55835 6.68606 6.87293 6.91539 7.25463 7.33549 7.56654 7.83844 7.86342 8.09511 8.24861 8.59152 9.20615 9.74050 11.23597 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.005860 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.366129 B = 4777.146801 C = 5420.359740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 H 0.069 0.931 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.665 5.665 15 C 0.057 3.943 16 H 0.064 0.936 17 C -0.108 4.108 18 C -0.158 4.158 19 C 0.056 3.944 20 N -0.685 5.685 21 C 0.035 3.965 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.005 0.995 28 H 0.032 0.968 29 H 0.258 0.742 30 H 0.336 0.664 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.338 0.662 38 H 0.074 0.926 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 3.432 12.037 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.087 0.913 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.294 5.294 15 C -0.055 4.055 16 H 0.082 0.918 17 C -0.146 4.146 18 C -0.197 4.197 19 C -0.074 4.074 20 N -0.313 5.313 21 C -0.096 4.096 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.256 3.099 12.314 15.713 hybrid contribution 0.192 0.082 -1.346 1.362 sum -9.064 3.181 10.968 14.579 Atomic orbital electron populations 1.22611 0.98601 1.01491 1.01266 1.21858 0.90907 0.97986 0.91728 0.91273 1.21632 1.00599 0.98395 0.93048 1.18987 0.88332 0.96361 0.97014 1.21360 0.91845 1.33956 1.08462 0.93128 1.24997 0.97130 0.95806 0.96496 1.69980 1.02137 1.44511 1.36917 0.86681 0.78128 0.79998 0.83682 1.20854 1.21336 1.20001 1.60482 1.56785 1.09319 1.02858 1.22358 0.95415 0.96520 0.91250 0.91813 1.21594 0.97721 0.99469 0.95849 1.22302 0.99793 1.00003 0.97647 1.22035 0.87211 1.02057 0.96068 1.60677 1.34159 1.09774 1.26729 1.22780 0.98274 0.97815 0.90738 0.92747 0.93702 0.92345 0.93473 0.93629 0.97647 0.94926 0.93281 0.84572 0.90746 0.91814 0.92280 0.91438 0.91003 0.91084 0.84490 0.90743 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.17 37.16 0.34 -2.08 16 2 C 0.08 1.42 2.53 -67.71 -0.17 1.25 16 3 H 0.07 1.23 7.34 -51.93 -0.38 0.85 16 4 C -0.10 -2.07 4.83 -26.73 -0.13 -2.19 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 10 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 N -0.66 -10.60 5.59 -99.61 -0.56 -11.16 16 15 C 0.06 0.77 2.70 -67.59 -0.18 0.59 16 16 H 0.06 0.91 7.15 -51.93 -0.37 0.54 16 17 C -0.11 -1.54 5.62 -26.56 -0.15 -1.69 16 18 C -0.16 -1.79 6.07 -26.65 -0.16 -1.95 16 19 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 20 N -0.69 -7.35 6.87 -113.82 -0.78 -8.13 16 21 C 0.03 0.40 5.70 -3.84 -0.02 0.38 16 22 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.04 0.53 6.86 -51.93 -0.36 0.18 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.34 4.88 7.88 -39.29 -0.31 4.57 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.34 3.33 8.86 -39.29 -0.35 2.98 16 38 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.07 0.79 6.87 -51.93 -0.36 0.43 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -30.62 305.62 -9.20 -39.82 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.14 Total: 2.99 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.05 Total: -18.37 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.60 Total: -46.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.62 -9.20 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246355264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.868 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds