Wall clock time and date at job start Sun Mar 29 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47441 * 2 1 4 4 C 1.53004 * 109.46932 * 120.00053 * 2 1 3 5 5 C 1.53002 * 109.46772 * 185.00461 * 4 2 1 6 6 C 1.50707 * 109.46714 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00058 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99754 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00205 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47090 * 59.99997 * 10 8 6 12 12 H 1.48495 * 109.47293 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47127 * 299.99910 * 10 8 6 14 14 N 1.46907 * 109.47439 * 239.99878 * 2 1 3 15 15 C 1.47442 * 110.99557 * 305.77703 * 14 2 1 16 16 C 1.54319 * 107.23171 * 123.25743 * 15 14 2 17 17 C 1.55143 * 103.01782 * 22.28353 * 16 15 14 18 18 C 1.53008 * 110.99040 * 206.25768 * 17 16 15 19 19 N 1.46899 * 110.99508 * 82.43974 * 17 16 15 20 20 C 1.47839 * 110.99938 * 66.61975 * 14 2 1 21 21 H 1.08997 * 109.47307 * 305.35554 * 1 2 3 22 22 H 1.09000 * 109.47001 * 65.35482 * 1 2 3 23 23 H 1.09002 * 109.46880 * 185.35260 * 1 2 3 24 24 H 1.09002 * 109.46724 * 304.99496 * 4 2 1 25 25 H 1.08989 * 109.47341 * 65.00323 * 4 2 1 26 26 H 1.09000 * 109.47357 * 299.99420 * 5 4 2 27 27 H 1.09000 * 109.47703 * 59.99915 * 5 4 2 28 28 H 0.96991 * 120.00505 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.88862 * 242.65783 * 15 14 2 30 30 H 1.08997 * 109.89302 * 3.68920 * 15 14 2 31 31 H 1.09002 * 110.70663 * 140.66437 * 16 15 14 32 32 H 1.08996 * 110.70532 * 263.72582 * 16 15 14 33 33 H 1.08994 * 109.47432 * 172.26648 * 18 17 16 34 34 H 1.09003 * 109.46845 * 292.26703 * 18 17 16 35 35 H 1.09006 * 109.47003 * 52.26077 * 18 17 16 36 36 H 1.00900 * 111.00075 * 67.73257 * 19 17 16 37 37 H 1.00900 * 110.99707 * 191.68610 * 19 17 16 38 38 H 1.09011 * 110.37524 * 332.46891 * 20 14 2 39 39 H 1.08998 * 110.37470 * 94.80437 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3231 2.5446 7 1 3.3686 -1.8029 3.2140 8 6 5.4184 -1.3600 2.8160 9 7 6.2691 -0.7761 2.0005 10 14 6.0409 -2.2393 4.3420 11 1 5.6475 -3.6700 4.2840 12 1 7.5209 -2.1356 4.4039 13 1 5.4492 -1.6118 5.5509 14 7 2.0198 -0.6925 -1.1995 15 6 1.4372 -2.0429 -1.3047 16 6 0.7250 -2.1283 -2.6711 17 6 1.4265 -1.0206 -3.5006 18 6 0.5043 -0.4938 -4.6020 19 7 2.6921 -1.5077 -4.0652 20 6 1.6800 0.0635 -2.4236 21 1 -0.3634 0.5946 0.8381 22 1 -0.3633 0.4285 -0.9341 23 1 -0.3633 -1.0232 0.0959 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 3.9995 -1.0727 0.4261 27 1 3.8532 0.4371 1.3574 28 1 7.2196 -0.8017 2.1915 29 1 2.2265 -2.7925 -1.2506 30 1 0.7198 -2.2011 -0.4995 31 1 0.8798 -3.1067 -3.1259 32 1 -0.3392 -1.9182 -2.5648 33 1 0.9650 0.3714 -5.0787 34 1 0.3427 -1.2749 -5.3450 35 1 -0.4519 -0.2028 -4.1670 36 1 2.5271 -2.2139 -4.7667 37 1 3.2376 -0.7462 -4.4400 38 1 0.7805 0.6585 -2.2648 39 1 2.5121 0.7033 -2.7177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246532618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:00 Heat of formation + Delta-G solvation = -30.460418 kcal Electronic energy + Delta-G solvation = -16502.394239 eV Core-core repulsion = 14057.222832 eV Total energy + Delta-G solvation = -2445.171407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78933 -37.20303 -35.15842 -33.08559 -31.14894 -29.89746 -29.89239 -27.22131 -26.24285 -23.67848 -22.73911 -20.62722 -19.95146 -18.33258 -17.40996 -16.61942 -16.47559 -16.41305 -15.18202 -14.92350 -14.64433 -14.43417 -14.08261 -13.79917 -13.71277 -13.43620 -13.28654 -13.07483 -12.80347 -12.72558 -12.38223 -12.24374 -12.03182 -11.82778 -11.77355 -11.48262 -11.35500 -11.19275 -10.88728 -10.47380 -9.45982 -8.86423 -8.12199 -6.23555 1.39626 1.43839 1.51464 2.44571 3.17894 3.20009 3.54275 3.64868 3.83130 4.07796 4.12058 4.29954 4.43476 4.47698 4.49409 4.66283 4.74312 4.78318 4.83722 4.87768 4.97187 4.99626 5.03575 5.10156 5.16281 5.26252 5.33294 5.36891 5.48330 5.59749 5.89721 6.03464 6.29289 6.35681 6.42477 6.47965 6.72033 6.96211 7.44473 8.99216 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038484 B = 0.006185 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.393287 B = 4525.785014 C = 4836.610014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H 0.061 0.939 4 C -0.088 4.088 5 C 0.041 3.959 6 C -0.544 4.544 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.529 5.529 15 C 0.053 3.947 16 C -0.118 4.118 17 C 0.110 3.890 18 C -0.164 4.164 19 N -0.840 5.840 20 C 0.051 3.949 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.046 0.954 26 H -0.001 1.001 27 H -0.024 1.024 28 H 0.261 0.739 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.347 0.653 37 H 0.345 0.655 38 H 0.063 0.937 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 0.028 -12.590 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.004 3.996 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.253 5.253 15 C -0.075 4.075 16 C -0.157 4.157 17 C 0.016 3.984 18 C -0.224 4.224 19 N -0.372 5.372 20 C -0.077 4.077 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.018 0.982 27 H -0.006 1.006 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.434 -0.221 -11.806 17.886 hybrid contribution -0.221 0.171 -0.089 0.293 sum -13.655 -0.050 -11.895 18.110 Atomic orbital electron populations 1.22395 0.95675 1.02460 1.02573 1.21819 0.93475 0.97199 0.90627 0.92091 1.21493 0.96721 0.98814 0.95573 1.18787 0.92036 0.93826 0.94957 1.21770 0.92572 1.34575 1.09330 0.92648 1.25986 0.97344 0.96479 1.00096 1.70130 1.02575 1.45636 1.39046 0.85540 0.77027 0.79206 0.79479 1.19304 1.20799 1.19087 1.63487 1.57856 1.02340 1.01594 1.22610 0.96620 0.90997 0.97249 1.22795 0.98927 0.99425 0.94523 1.21857 0.89334 0.93638 0.93559 1.22384 0.99985 1.01633 0.98355 1.58585 1.18462 1.17812 1.42360 1.23140 0.99436 0.95809 0.89301 0.91579 0.91351 0.91990 0.93074 0.93556 0.98207 1.00550 0.93009 0.93974 0.92483 0.90445 0.89736 0.92061 0.91315 0.91336 0.83915 0.84140 0.91879 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 8.58 71.98 0.62 -3.96 16 2 C 0.08 2.78 2.28 44.92 0.10 2.88 16 3 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 4 C -0.09 -3.89 4.54 30.60 0.14 -3.75 16 5 C 0.04 2.35 4.86 29.85 0.15 2.49 16 6 C -0.54 -33.04 9.11 25.60 0.23 -32.80 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 9 N -0.93 -60.27 13.29 21.45 0.28 -59.99 16 10 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 N -0.53 -18.84 4.61 -860.35 -3.97 -22.80 16 15 C 0.05 1.70 5.55 86.65 0.48 2.18 16 16 C -0.12 -2.73 6.11 31.78 0.19 -2.54 16 17 C 0.11 2.44 1.13 4.92 0.01 2.44 16 18 C -0.16 -2.55 8.94 71.98 0.64 -1.90 16 19 N -0.84 -19.83 9.07 -146.13 -1.33 -21.15 16 20 C 0.05 1.42 5.62 86.77 0.49 1.91 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 1.54 6.20 -2.39 -0.01 1.53 16 23 H 0.06 1.59 6.22 -2.39 -0.01 1.58 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.02 6.75 -2.39 -0.02 2.01 16 26 H 0.00 -0.03 7.75 -2.39 -0.02 -0.05 16 27 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 28 H 0.26 15.83 8.31 -92.72 -0.77 15.06 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.77 4.81 -2.39 -0.01 1.76 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 36 H 0.35 6.53 9.02 -89.69 -0.81 5.72 16 37 H 0.34 7.60 8.99 -89.69 -0.81 6.79 16 38 H 0.06 1.53 5.82 -2.38 -0.01 1.52 16 39 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 Total: -1.00 -70.81 300.90 -0.06 -70.87 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.59 Total: 17.28 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 3.51 Total: -32.70 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.01 Total: -103.95 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -70.81 -0.06 -70.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246532618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.407 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds