Wall clock time and date at job start Sun Mar 29 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 C 1.53003 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99841 * 90.00013 * 5 4 3 7 7 H 1.08001 * 119.99540 * 209.62896 * 6 5 4 8 8 C 1.38810 * 119.99967 * 29.91531 * 6 5 4 9 9 N 1.31615 * 119.99599 * 209.60176 * 8 6 5 10 10 Si 1.86799 * 120.00032 * 29.59546 * 8 6 5 11 11 H 1.48502 * 109.47470 * 358.00006 * 10 8 6 12 12 H 1.48509 * 109.47117 * 117.99671 * 10 8 6 13 13 H 1.48497 * 109.47173 * 237.99302 * 10 8 6 14 14 C 1.46500 * 120.00085 * 270.00334 * 5 4 3 15 15 H 1.09004 * 109.50119 * 2.29953 * 14 5 4 16 16 C 1.53117 * 109.50530 * 242.22501 * 14 5 4 17 17 C 1.53114 * 109.16084 * 182.40440 * 16 14 5 18 18 C 1.53042 * 109.28205 * 57.65328 * 17 16 14 19 19 N 1.46848 * 109.51795 * 300.82182 * 18 17 16 20 20 C 1.46845 * 111.20221 * 61.74056 * 19 18 17 21 21 H 1.08997 * 109.47414 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47278 * 300.00123 * 1 2 3 23 23 H 1.09003 * 109.46906 * 59.99534 * 1 2 3 24 24 H 1.08994 * 109.46862 * 240.00230 * 2 1 3 25 25 H 1.09000 * 109.46905 * 119.99923 * 2 1 3 26 26 H 1.09001 * 109.47451 * 60.00271 * 3 2 1 27 27 H 1.09003 * 109.47646 * 300.00012 * 3 2 1 28 28 H 1.09003 * 109.47007 * 60.00888 * 4 3 2 29 29 H 1.08991 * 109.47451 * 300.00196 * 4 3 2 30 30 H 0.97006 * 119.99949 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.51538 * 302.30626 * 16 14 5 32 32 H 1.08992 * 109.52642 * 62.43256 * 16 14 5 33 33 H 1.09001 * 109.50397 * 177.58763 * 17 16 14 34 34 H 1.08997 * 109.50452 * 297.67126 * 17 16 14 35 35 H 1.09000 * 109.46122 * 60.83175 * 18 17 16 36 36 H 1.08997 * 109.46368 * 180.80385 * 18 17 16 37 37 H 1.00898 * 110.99808 * 297.64148 * 19 18 17 38 38 H 1.08996 * 109.46377 * 178.24415 * 20 19 18 39 39 H 1.08996 * 109.46006 * 58.27188 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2861 3.4688 1.1875 7 1 4.1749 4.5413 1.2488 8 6 4.6658 2.7450 2.3094 9 7 4.3383 3.1728 3.5103 10 14 5.6412 1.1638 2.1149 11 1 5.8380 0.8780 0.6710 12 1 6.9633 1.3135 2.7745 13 1 4.8979 0.0431 2.7446 14 6 4.3031 3.5147 -1.2671 15 1 4.0288 2.8620 -2.0959 16 6 5.7865 3.8792 -1.3729 17 6 6.0223 4.6533 -2.6727 18 6 5.1328 5.8987 -2.6877 19 7 3.7242 5.4967 -2.5850 20 6 3.4634 4.7929 -1.3229 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9337 0.9286 -0.8892 29 1 3.9330 0.9288 0.8907 30 1 4.6033 2.6668 4.2944 31 1 6.0705 4.4995 -0.5228 32 1 6.3859 2.9690 -1.3761 33 1 7.0686 4.9529 -2.7332 34 1 5.7755 4.0190 -3.5240 35 1 5.3902 6.5390 -1.8440 36 1 5.2879 6.4445 -3.6183 37 1 3.4502 4.9338 -3.3763 38 1 2.4060 4.5357 -1.2623 39 1 3.7286 5.4384 -0.4856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246862065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:06 Heat of formation + Delta-G solvation = 5.440865 kcal Electronic energy + Delta-G solvation = -16821.245175 eV Core-core repulsion = 14377.630564 eV Total energy + Delta-G solvation = -2443.614611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.56003 -36.01977 -33.79668 -31.65785 -30.98134 -29.56022 -27.41034 -24.20327 -23.23618 -22.58984 -20.86430 -20.48385 -19.51969 -16.45459 -15.67747 -15.33495 -14.63380 -14.44739 -14.19256 -13.99265 -13.43250 -12.94995 -12.80054 -12.39435 -12.30557 -11.80037 -11.72984 -11.58012 -11.24371 -10.93369 -10.71623 -10.68983 -10.54397 -10.46955 -10.23747 -10.12010 -9.93681 -9.60773 -9.20117 -8.60070 -8.01478 -6.81042 -5.99775 -3.26608 3.34572 3.49580 3.53033 4.53789 4.65372 4.94473 5.22054 5.36195 5.41660 5.42958 5.53120 5.59696 5.64009 5.77966 5.91893 5.93912 6.00538 6.08573 6.17957 6.25362 6.26485 6.31993 6.36035 6.41069 6.52272 6.54462 6.63504 6.68689 6.94607 6.98519 7.01871 7.14580 7.41504 7.77494 8.03238 8.36881 9.01303 9.76561 10.14889 11.15961 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.011306 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.016648 B = 2475.923729 C = 3344.129569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.135 4.135 4 C 0.153 3.847 5 N -0.600 5.600 6 C -0.262 4.262 7 H 0.082 0.918 8 C 0.036 3.964 9 N -0.891 5.891 10 Si 0.858 3.142 11 H -0.268 1.268 12 H -0.301 1.301 13 H -0.292 1.292 14 C 0.149 3.851 15 H 0.047 0.953 16 C -0.129 4.129 17 C -0.154 4.154 18 C 0.059 3.941 19 N -0.688 5.688 20 C 0.050 3.950 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.261 0.739 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.330 0.670 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 -1.683 -11.153 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.175 4.175 4 C 0.028 3.972 5 N -0.321 5.321 6 C -0.390 4.390 7 H 0.100 0.900 8 C -0.164 4.164 9 N -0.532 5.532 10 Si 0.688 3.312 11 H -0.193 1.193 12 H -0.230 1.230 13 H -0.219 1.219 14 C 0.040 3.960 15 H 0.065 0.935 16 C -0.169 4.169 17 C -0.194 4.194 18 C -0.071 4.071 19 N -0.316 5.316 20 C -0.081 4.081 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.086 0.914 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.919 -1.061 -10.710 10.932 hybrid contribution 1.190 -1.932 -0.018 2.269 sum -0.729 -2.993 -10.727 11.161 Atomic orbital electron populations 1.21748 0.96486 1.00608 1.01660 1.21523 0.95340 0.98383 1.01121 1.22170 0.98604 0.94657 1.02064 1.21067 0.91800 0.86228 0.98149 1.44183 1.74954 1.11232 1.01721 1.18660 1.41648 0.93668 0.85005 0.90036 1.25257 0.98859 0.97318 0.94976 1.69984 1.44701 1.40659 0.97857 0.87138 0.81144 0.85023 0.77918 1.19255 1.22970 1.21918 1.21050 0.92995 0.93472 0.88457 0.93487 1.22029 0.98732 0.99655 0.96463 1.22309 1.00192 0.98254 0.98655 1.21970 0.87450 0.96179 1.01537 1.60798 1.19272 1.46391 1.05135 1.22479 0.99627 0.94859 0.91100 0.93583 0.92736 0.93135 0.92918 0.92502 0.91175 0.93111 0.94834 0.93810 0.92920 0.90906 0.93055 0.92371 0.92920 0.91051 0.91742 0.85341 0.91355 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.14 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.29 4.09 -4.04 -0.02 3.28 16 5 N -0.60 -13.68 2.14 -165.57 -0.35 -14.04 16 6 C -0.26 -7.01 8.71 -15.06 -0.13 -7.15 16 7 H 0.08 2.36 6.83 -52.49 -0.36 2.00 16 8 C 0.04 1.02 5.22 -17.43 -0.09 0.93 16 9 N -0.89 -26.83 13.97 55.49 0.78 -26.05 16 10 Si 0.86 21.91 25.27 -169.99 -4.30 17.62 16 11 H -0.27 -6.60 6.29 56.52 0.36 -6.24 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 C 0.15 2.86 2.78 -67.85 -0.19 2.67 16 15 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 16 C -0.13 -2.39 5.32 -26.61 -0.14 -2.53 16 17 C -0.15 -2.23 6.08 -26.65 -0.16 -2.39 16 18 C 0.06 0.83 6.55 -3.83 -0.03 0.80 16 19 N -0.69 -10.49 6.87 -113.82 -0.78 -11.27 16 20 C 0.05 0.91 5.78 -3.84 -0.02 0.88 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.67 7.94 -51.93 -0.41 0.25 16 29 H 0.04 1.04 3.19 -51.93 -0.17 0.87 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.51 7.64 -51.92 -0.40 1.11 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.33 4.47 8.86 -39.29 -0.35 4.12 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.64 6.84 -51.93 -0.35 1.29 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -28.61 297.94 -8.00 -36.61 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.12 Total: 2.68 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.72 Total: -10.04 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.36 Total: -51.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.30 Total: 17.62 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.61 -8.00 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246862065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.055 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds