Wall clock time and date at job start Sun Mar 29 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 C 1.53003 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99841 * 90.00013 * 5 4 3 7 7 H 1.08001 * 119.99540 * 209.62896 * 6 5 4 8 8 C 1.38810 * 119.99967 * 29.91531 * 6 5 4 9 9 N 1.31615 * 119.99599 * 209.60176 * 8 6 5 10 10 Si 1.86799 * 120.00032 * 29.59546 * 8 6 5 11 11 H 1.48502 * 109.47470 * 358.00006 * 10 8 6 12 12 H 1.48509 * 109.47117 * 117.99671 * 10 8 6 13 13 H 1.48497 * 109.47173 * 237.99302 * 10 8 6 14 14 C 1.46500 * 120.00085 * 270.00334 * 5 4 3 15 15 H 1.09004 * 109.50119 * 2.29953 * 14 5 4 16 16 C 1.53117 * 109.50530 * 242.22501 * 14 5 4 17 17 C 1.53114 * 109.16084 * 182.40440 * 16 14 5 18 18 C 1.53042 * 109.28205 * 57.65328 * 17 16 14 19 19 N 1.46848 * 109.51795 * 300.82182 * 18 17 16 20 20 C 1.46845 * 111.20221 * 61.74056 * 19 18 17 21 21 H 1.08997 * 109.47414 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47278 * 300.00123 * 1 2 3 23 23 H 1.09003 * 109.46906 * 59.99534 * 1 2 3 24 24 H 1.08994 * 109.46862 * 240.00230 * 2 1 3 25 25 H 1.09000 * 109.46905 * 119.99923 * 2 1 3 26 26 H 1.09001 * 109.47451 * 60.00271 * 3 2 1 27 27 H 1.09003 * 109.47646 * 300.00012 * 3 2 1 28 28 H 1.09003 * 109.47007 * 60.00888 * 4 3 2 29 29 H 1.08991 * 109.47451 * 300.00196 * 4 3 2 30 30 H 0.97006 * 119.99949 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.51538 * 302.30626 * 16 14 5 32 32 H 1.08992 * 109.52642 * 62.43256 * 16 14 5 33 33 H 1.09001 * 109.50397 * 177.58763 * 17 16 14 34 34 H 1.08997 * 109.50452 * 297.67126 * 17 16 14 35 35 H 1.09000 * 109.46122 * 60.83175 * 18 17 16 36 36 H 1.08997 * 109.46368 * 180.80385 * 18 17 16 37 37 H 1.00898 * 110.99808 * 297.64148 * 19 18 17 38 38 H 1.08996 * 109.46377 * 178.24415 * 20 19 18 39 39 H 1.08996 * 109.46006 * 58.27188 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2861 3.4688 1.1875 7 1 4.1749 4.5413 1.2488 8 6 4.6658 2.7450 2.3094 9 7 4.3383 3.1728 3.5103 10 14 5.6412 1.1638 2.1149 11 1 5.8380 0.8780 0.6710 12 1 6.9633 1.3135 2.7745 13 1 4.8979 0.0431 2.7446 14 6 4.3031 3.5147 -1.2671 15 1 4.0288 2.8620 -2.0959 16 6 5.7865 3.8792 -1.3729 17 6 6.0223 4.6533 -2.6727 18 6 5.1328 5.8987 -2.6877 19 7 3.7242 5.4967 -2.5850 20 6 3.4634 4.7929 -1.3229 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9337 0.9286 -0.8892 29 1 3.9330 0.9288 0.8907 30 1 4.6033 2.6668 4.2944 31 1 6.0705 4.4995 -0.5228 32 1 6.3859 2.9690 -1.3761 33 1 7.0686 4.9529 -2.7332 34 1 5.7755 4.0190 -3.5240 35 1 5.3902 6.5390 -1.8440 36 1 5.2879 6.4445 -3.6183 37 1 3.4502 4.9338 -3.3763 38 1 2.4060 4.5357 -1.2623 39 1 3.7286 5.4384 -0.4856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246862065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:06 Heat of formation + Delta-G solvation = -13.417928 kcal Electronic energy + Delta-G solvation = -16822.062953 eV Core-core repulsion = 14377.630564 eV Total energy + Delta-G solvation = -2444.432390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04928 -37.58944 -35.30274 -33.65710 -32.34633 -30.99178 -29.06815 -26.03373 -24.65184 -24.01152 -22.31435 -21.94865 -21.12245 -18.41360 -17.40681 -16.80508 -16.29029 -15.97280 -15.63565 -15.34192 -14.97826 -14.55668 -14.33245 -14.10319 -13.82975 -13.24203 -13.20882 -13.04892 -12.81983 -12.79584 -12.15493 -12.13283 -12.01728 -11.97777 -11.77460 -11.59390 -11.53674 -11.31074 -10.98885 -10.64178 -9.49552 -8.63414 -8.18705 -5.40188 1.28058 1.39477 1.47337 2.43424 2.98188 3.25136 3.61863 3.94972 4.08117 4.12486 4.23162 4.27466 4.37657 4.38813 4.45753 4.49454 4.64846 4.70555 4.76252 4.93228 4.98929 5.00307 5.02876 5.11000 5.14582 5.15750 5.22194 5.35497 5.45305 5.46405 5.50110 5.58305 5.93665 6.07343 6.22357 6.63702 7.01547 7.71578 8.09719 9.01650 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.011306 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.016648 B = 2475.923729 C = 3344.129569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.145 3.855 5 N -0.610 5.610 6 C -0.234 4.234 7 H 0.047 0.953 8 C -0.022 4.022 9 N -0.942 5.942 10 Si 0.921 3.079 11 H -0.250 1.250 12 H -0.313 1.313 13 H -0.293 1.293 14 C 0.146 3.854 15 H 0.072 0.928 16 C -0.127 4.127 17 C -0.143 4.143 18 C 0.059 3.941 19 N -0.684 5.684 20 C 0.065 3.935 21 H 0.067 0.933 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.347 0.653 38 H 0.062 0.938 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -2.877 -14.494 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.164 4.164 4 C 0.020 3.980 5 N -0.332 5.332 6 C -0.364 4.364 7 H 0.065 0.935 8 C -0.217 4.217 9 N -0.587 5.587 10 Si 0.750 3.250 11 H -0.174 1.174 12 H -0.243 1.243 13 H -0.220 1.220 14 C 0.038 3.962 15 H 0.090 0.910 16 C -0.167 4.167 17 C -0.182 4.182 18 C -0.071 4.071 19 N -0.313 5.313 20 C -0.066 4.066 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.002 -2.269 -14.117 14.438 hybrid contribution 1.171 -1.467 0.937 2.098 sum -0.830 -3.736 -13.180 13.725 Atomic orbital electron populations 1.21717 0.94693 1.02066 1.01698 1.21506 0.96945 0.96006 1.01624 1.22008 0.96779 0.96722 1.00883 1.21218 0.93412 0.85204 0.98164 1.44334 1.75273 1.11870 1.01742 1.18499 1.39033 0.92372 0.86510 0.93483 1.25760 1.00513 1.00698 0.94765 1.70090 1.47174 1.42799 0.98627 0.86143 0.78855 0.81563 0.78429 1.17425 1.24260 1.22005 1.21272 0.93772 0.93870 0.87288 0.90966 1.21961 0.97764 0.99261 0.97682 1.22225 1.01303 0.97961 0.96738 1.22038 0.86456 0.96108 1.02490 1.60711 1.20357 1.46017 1.04228 1.22147 0.98970 0.93873 0.91638 0.91432 0.93914 0.91945 0.90662 0.93724 0.94865 0.91704 0.92200 0.96090 0.93234 0.94365 0.93861 0.90818 0.90638 0.92885 0.88382 0.83443 0.91905 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.12 -3.64 5.93 30.59 0.18 -3.46 16 3 C -0.12 -4.55 5.54 30.59 0.17 -4.38 16 4 C 0.14 6.01 4.09 86.38 0.35 6.36 16 5 N -0.61 -27.68 2.14 -677.74 -1.45 -29.12 16 6 C -0.23 -12.98 8.71 84.03 0.73 -12.25 16 7 H 0.05 2.90 6.83 -2.91 -0.02 2.88 16 8 C -0.02 -1.26 5.22 84.86 0.44 -0.81 16 9 N -0.94 -59.31 13.97 21.65 0.30 -59.01 16 10 Si 0.92 46.49 25.27 68.60 1.73 48.22 16 11 H -0.25 -11.74 6.29 99.48 0.63 -11.11 16 12 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 13 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 14 C 0.15 5.37 2.78 45.04 0.13 5.49 16 15 H 0.07 2.34 7.82 -2.38 -0.02 2.32 16 16 C -0.13 -4.53 5.32 30.67 0.16 -4.37 16 17 C -0.14 -3.65 6.08 30.65 0.19 -3.47 16 18 C 0.06 1.49 6.55 86.33 0.57 2.06 16 19 N -0.68 -19.14 6.87 -514.02 -3.53 -22.67 16 20 C 0.06 2.32 5.78 86.33 0.50 2.82 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.17 7.94 -2.39 -0.02 2.15 16 29 H 0.02 0.97 3.19 -2.39 -0.01 0.97 16 30 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 31 H 0.04 1.60 7.64 -2.38 -0.02 1.58 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.35 8.01 8.86 -89.70 -0.79 7.21 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.82 6.84 -2.39 -0.02 1.80 16 Total: -1.00 -64.30 297.94 1.31 -62.99 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.12 Total: 14.49 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.13 Total: -14.90 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.68 Total: -110.80 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.73 Total: 48.22 kcal Total: -64.30 1.31 -62.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246862065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.567 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds