Wall clock time and date at job start Sun Mar 29 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46759 * 2 1 4 4 C 1.50696 * 109.47399 * 120.00365 * 2 1 3 5 5 H 1.07997 * 120.00302 * 119.99737 * 4 2 1 6 6 C 1.37877 * 119.99625 * 300.00031 * 4 2 1 7 7 N 1.31511 * 120.00635 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47005 * 59.99976 * 8 6 4 10 10 H 1.48497 * 109.47310 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47020 * 300.00401 * 8 6 4 12 12 N 1.46897 * 109.47086 * 240.00567 * 2 1 3 13 13 C 1.46902 * 111.00406 * 152.68005 * 12 2 1 14 14 H 1.09003 * 108.92041 * 35.24198 * 13 12 2 15 15 C 1.45876 * 108.94458 * 153.95588 * 13 12 2 16 16 C 1.54307 * 112.18737 * 181.81636 * 15 13 12 17 17 C 1.50442 * 108.50256 * 281.46252 * 16 15 13 18 18 N 1.48000 * 112.82268 * 93.72445 * 17 16 15 19 19 C 1.46904 * 110.99777 * 84.84453 * 18 17 16 20 20 C 1.48000 * 114.63597 * 318.09477 * 18 17 16 21 21 C 1.50443 * 112.82562 * 318.08906 * 20 18 17 22 22 H 1.09004 * 109.47212 * 179.76817 * 1 2 3 23 23 H 1.09001 * 109.47397 * 299.76932 * 1 2 3 24 24 H 1.08999 * 109.47039 * 59.77281 * 1 2 3 25 25 H 0.96997 * 120.00565 * 179.97438 * 7 6 4 26 26 H 1.00905 * 110.99970 * 276.63106 * 12 2 1 27 27 H 1.09000 * 108.93848 * 302.51511 * 15 13 12 28 28 H 1.09005 * 108.93506 * 61.11922 * 15 13 12 29 29 H 1.09001 * 109.63412 * 41.17007 * 16 15 13 30 30 H 1.09005 * 109.62840 * 161.76129 * 16 15 13 31 31 H 1.08994 * 108.81694 * 214.59480 * 17 16 15 32 32 H 1.09005 * 108.81255 * 332.97811 * 17 16 15 33 33 H 1.09001 * 109.46894 * 56.03949 * 19 18 17 34 34 H 1.08999 * 109.47107 * 176.04380 * 19 18 17 35 35 H 1.09002 * 109.46834 * 296.04576 * 19 18 17 36 36 H 1.08994 * 108.80687 * 78.95173 * 20 18 17 37 37 H 1.09004 * 108.81136 * 197.22336 * 20 18 17 38 38 H 1.08997 * 109.63425 * 334.02701 * 21 20 18 39 39 H 1.09003 * 109.63106 * 213.42829 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9428 0.8295 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0080 10 1 1.8260 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 3.3439 -0.1924 -1.5923 14 1 3.9108 0.0508 -0.6936 15 6 4.0465 -1.2388 -2.3266 16 6 5.4696 -0.8069 -2.7382 17 6 5.3673 0.0858 -3.9448 18 7 5.3214 1.5228 -3.5936 19 6 6.6753 2.0657 -3.4196 20 6 4.4666 1.8463 -2.4296 21 6 3.1661 1.0899 -2.4323 22 1 -0.3634 -1.0277 -0.0042 23 1 -0.3634 0.5102 0.8920 24 1 -0.3633 0.5174 -0.8879 25 1 0.7081 1.1606 3.4844 26 1 2.0376 -1.6913 -1.0584 27 1 4.1142 -2.1272 -1.6987 28 1 3.4779 -1.4842 -3.2237 29 1 5.9385 -0.2625 -1.9185 30 1 6.0630 -1.6877 -2.9835 31 1 6.2296 -0.0917 -4.5875 32 1 4.4614 -0.1691 -4.4949 33 1 7.2572 1.8874 -4.3239 34 1 6.6155 3.1376 -3.2314 35 1 7.1578 1.5747 -2.5744 36 1 5.0109 1.6062 -1.5163 37 1 4.2517 2.9149 -2.4375 38 1 2.8994 0.8237 -3.4551 39 1 2.3819 1.7082 -1.9953 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254508499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:37 Heat of formation + Delta-G solvation = -21.447088 kcal Electronic energy + Delta-G solvation = -16694.601738 eV Core-core repulsion = 14249.821178 eV Total energy + Delta-G solvation = -2444.780560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54085 -37.65235 -35.33829 -33.57762 -32.61398 -30.11612 -27.78091 -27.18907 -25.39487 -24.88371 -21.96063 -21.27232 -20.47994 -18.61691 -17.15330 -17.01830 -16.78872 -15.76287 -15.47587 -15.42661 -14.51164 -14.40561 -14.05629 -13.94243 -13.49201 -13.32092 -13.07028 -12.97780 -12.87672 -12.73060 -12.36782 -12.28324 -12.18530 -11.97062 -11.81311 -11.72687 -11.30014 -11.18291 -11.06276 -10.52857 -9.12713 -9.09215 -8.09765 -6.31530 1.36052 1.36812 1.44643 2.36981 2.98112 3.11228 3.45717 3.89866 3.93955 4.08903 4.24670 4.31710 4.49957 4.56960 4.61830 4.70415 4.76637 4.84412 4.91881 4.92933 5.03295 5.05469 5.08407 5.14332 5.20111 5.26149 5.29941 5.40454 5.45664 5.49664 5.66207 6.05239 6.14066 6.16908 6.24527 6.37114 6.80102 6.99728 7.40188 8.88399 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032864 B = 0.007015 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.783296 B = 3990.544423 C = 4142.925100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.560 4.560 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.096 3.904 14 H 0.004 0.996 15 C -0.112 4.112 16 C -0.137 4.137 17 C 0.060 3.940 18 N -0.560 5.560 19 C 0.027 3.973 20 C 0.071 3.929 21 C -0.095 4.095 22 H 0.026 0.974 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.263 0.737 26 H 0.329 0.671 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 -1.148 -11.222 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H 0.019 0.981 4 C -0.599 4.599 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.313 5.313 13 C -0.014 4.014 14 H 0.022 0.978 15 C -0.150 4.150 16 C -0.176 4.176 17 C -0.067 4.067 18 N -0.285 5.285 19 C -0.121 4.121 20 C -0.056 4.056 21 C -0.133 4.133 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.039 -0.387 -11.896 14.945 hybrid contribution 0.903 -0.998 2.769 3.078 sum 9.943 -1.384 -9.127 13.567 Atomic orbital electron populations 1.21533 0.97757 0.98769 0.99261 1.18916 0.92381 0.92604 0.85460 0.98133 1.22092 1.31857 1.12788 0.93134 0.93347 1.25688 0.95046 0.95571 1.01794 1.69996 1.37108 1.23858 1.24191 0.85724 0.78530 0.78996 0.79068 1.20139 1.20655 1.19527 1.60965 1.24696 1.08571 1.37071 1.20368 0.89546 0.95773 0.95669 0.97763 1.20678 0.96251 0.97242 1.00816 1.21797 0.96035 1.00840 0.98945 1.21953 1.03224 0.85150 0.96393 1.61949 1.12175 1.15754 1.38630 1.22402 0.88593 1.00081 1.00999 1.21625 0.93374 0.99796 0.90852 1.21243 0.96095 0.95569 1.00390 0.95526 0.92514 0.95513 0.92775 0.85425 0.93072 0.90402 0.93607 0.89245 0.89386 0.90820 0.89611 0.91410 0.96335 0.96552 0.91095 0.90295 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 9.30 71.98 0.67 -5.14 16 2 C 0.22 11.12 2.26 44.17 0.10 11.22 16 3 H 0.00 0.04 7.07 -2.39 -0.02 0.02 16 4 C -0.56 -31.01 8.36 25.60 0.21 -30.80 16 5 H 0.05 2.65 7.71 -2.91 -0.02 2.62 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.68 -29.37 6.03 -482.32 -2.91 -32.28 16 13 C 0.10 3.64 1.86 43.18 0.08 3.72 16 14 H 0.00 0.19 7.05 -2.39 -0.02 0.18 16 15 C -0.11 -3.35 4.52 28.85 0.13 -3.21 16 16 C -0.14 -3.35 5.60 30.21 0.17 -3.18 16 17 C 0.06 1.34 5.16 85.26 0.44 1.78 16 18 N -0.56 -14.24 4.94 -926.51 -4.57 -18.81 16 19 C 0.03 0.57 9.40 127.69 1.20 1.77 16 20 C 0.07 2.19 4.99 85.26 0.43 2.61 16 21 C -0.09 -3.28 5.11 30.21 0.15 -3.13 16 22 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.06 3.13 6.06 -2.39 -0.01 3.12 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.33 13.84 7.81 -89.69 -0.70 13.14 16 27 H 0.05 1.57 7.96 -2.39 -0.02 1.55 16 28 H 0.08 2.16 7.52 -2.38 -0.02 2.14 16 29 H 0.05 1.29 6.65 -2.39 -0.02 1.27 16 30 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.09 1.56 7.74 -2.39 -0.02 1.54 16 32 H 0.07 1.70 6.58 -2.38 -0.02 1.68 16 33 H 0.09 1.41 7.96 -2.39 -0.02 1.39 16 34 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.02 0.40 7.78 -2.39 -0.02 0.38 16 36 H 0.02 0.55 6.48 -2.39 -0.02 0.54 16 37 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.08 2.56 7.07 -2.39 -0.02 2.54 16 39 H 0.05 1.96 7.28 -2.39 -0.02 1.95 16 Total: -1.00 -59.66 292.71 -0.87 -60.53 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.31 Total: 20.35 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.03 Total: -22.85 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -7.24 Total: -103.89 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.66 -0.87 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254508499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.084 kcal (2) G-P(sol) polarization free energy of solvation -59.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds