Wall clock time and date at job start Sun Mar 29 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 H 1.09005 * 109.47134 * 54.36510 * 3 2 1 5 5 C 1.50703 * 109.47447 * 174.35992 * 3 2 1 6 6 H 1.07990 * 120.00264 * 119.99992 * 5 3 2 7 7 C 1.37886 * 119.99879 * 300.00310 * 5 3 2 8 8 N 1.31516 * 119.99664 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00101 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46987 * 89.99899 * 9 7 5 11 11 H 1.48495 * 109.47433 * 210.00175 * 9 7 5 12 12 H 1.48502 * 109.47147 * 330.00013 * 9 7 5 13 13 N 1.46899 * 109.47400 * 294.36188 * 3 2 1 14 14 C 1.46902 * 110.99967 * 152.93566 * 13 3 2 15 15 C 1.52999 * 109.47063 * 174.63745 * 14 13 3 16 16 H 1.09001 * 110.01951 * 306.39993 * 15 14 13 17 17 C 1.53881 * 110.02865 * 67.83386 * 15 14 13 18 18 C 1.54262 * 106.59676 * 119.28509 * 17 15 14 19 19 C 1.54890 * 104.19882 * 23.61155 * 18 17 15 20 20 H 1.09000 * 110.91883 * 80.43896 * 19 18 17 21 21 N 1.46902 * 110.75981 * 203.74549 * 19 18 17 22 22 C 1.54257 * 110.03617 * 185.00033 * 15 14 13 23 23 H 1.09007 * 109.46917 * 299.31780 * 1 2 3 24 24 H 1.08997 * 109.47368 * 59.32128 * 1 2 3 25 25 H 1.08999 * 109.47034 * 179.32043 * 1 2 3 26 26 H 1.09003 * 109.47272 * 240.00415 * 2 1 3 27 27 H 1.09000 * 109.47028 * 120.00033 * 2 1 3 28 28 H 0.97003 * 119.99818 * 179.97438 * 8 7 5 29 29 H 1.00895 * 110.99725 * 28.98631 * 13 3 2 30 30 H 1.09008 * 109.46963 * 54.64318 * 14 13 3 31 31 H 1.08994 * 109.47425 * 294.63893 * 14 13 3 32 32 H 1.08997 * 110.03035 * 238.56992 * 17 15 14 33 33 H 1.09002 * 110.03420 * 359.95245 * 17 15 14 34 34 H 1.08996 * 110.48978 * 264.92924 * 18 17 15 35 35 H 1.08998 * 110.48926 * 142.28707 * 18 17 15 36 36 H 1.00898 * 110.99195 * 293.32430 * 21 19 18 37 37 H 1.00891 * 110.99932 * 57.27698 * 21 19 18 38 38 H 1.09001 * 110.48763 * 98.43038 * 22 15 14 39 39 H 1.09003 * 110.48498 * 335.78541 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 0.8353 5 6 3.5405 1.4449 0.1396 6 1 4.1539 1.8866 -0.6316 7 6 4.1302 0.8831 1.2522 8 7 3.3832 0.3456 2.1917 9 14 5.9902 0.8854 1.4250 10 1 6.4205 2.1209 2.1275 11 1 6.4161 -0.3028 2.2073 12 1 6.6126 0.8399 0.0775 13 7 1.6646 2.0947 -1.2616 14 6 1.5362 3.5474 -1.0855 15 6 1.2771 4.2048 -2.4425 16 1 2.0457 3.9054 -3.1550 17 6 -0.1132 3.8030 -2.9658 18 6 -0.9218 5.1082 -3.1153 19 6 0.1576 6.2084 -3.2692 20 1 0.5343 6.2437 -4.2915 21 7 -0.3724 7.5178 -2.8662 22 6 1.2647 5.7400 -2.2924 23 1 -0.3633 0.5032 0.8961 24 1 -0.3634 0.5243 -0.8838 25 1 -0.3633 -1.0276 -0.0122 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7980 -0.0500 2.9742 29 1 0.8144 1.6991 -1.6341 30 1 2.4577 3.9446 -0.6595 31 1 0.7044 3.7600 -0.4140 32 1 -0.0196 3.3089 -3.9328 33 1 -0.6028 3.1391 -2.2534 34 1 -1.5249 5.2874 -2.2253 35 1 -1.5530 5.0664 -4.0029 36 1 -1.0940 7.8264 -3.5003 37 1 -0.7117 7.4937 -1.9164 38 1 2.2290 6.1592 -2.5794 39 1 1.0146 6.0212 -1.2694 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577041954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:46 Heat of formation + Delta-G solvation = -46.460127 kcal Electronic energy + Delta-G solvation = -16198.526933 eV Core-core repulsion = 13752.661726 eV Total energy + Delta-G solvation = -2445.865207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87855 -37.86989 -34.91091 -33.70240 -32.22775 -29.98527 -28.78261 -27.19239 -24.98668 -23.91647 -21.60076 -21.14135 -20.38119 -18.37908 -17.44018 -16.77645 -16.67289 -16.08157 -15.68335 -15.30167 -14.67328 -14.31319 -14.09109 -13.86769 -13.52206 -13.28239 -13.14924 -13.09017 -12.75279 -12.55391 -12.25583 -12.06302 -11.98961 -11.75204 -11.59023 -11.47834 -11.37259 -11.10458 -11.00558 -10.43743 -9.53837 -8.99132 -8.07309 -6.19436 1.40541 1.41363 1.52510 2.43600 3.17291 3.40838 3.70124 3.71799 3.93951 4.16762 4.38104 4.43664 4.48298 4.52192 4.54482 4.64822 4.68463 4.74449 4.79234 4.90022 4.99818 5.05992 5.12457 5.16775 5.24450 5.33305 5.37252 5.42657 5.52896 5.60702 5.74629 5.89385 6.27678 6.36044 6.52417 6.65161 6.94293 7.02584 7.49712 8.95938 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031210 B = 0.006380 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.926543 B = 4387.500642 C = 5028.473347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.223 3.777 4 H -0.035 1.035 5 C -0.512 4.512 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.686 5.686 14 C 0.081 3.919 15 C -0.082 4.082 16 H 0.070 0.930 17 C -0.113 4.113 18 C -0.149 4.149 19 C 0.094 3.906 20 H 0.091 0.909 21 N -0.848 5.848 22 C -0.109 4.109 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.042 0.958 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.350 0.650 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 8.460 -9.647 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.114 3.886 4 H -0.017 1.017 5 C -0.550 4.550 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.318 5.318 14 C -0.049 4.049 15 C -0.101 4.101 16 H 0.088 0.912 17 C -0.151 4.151 18 C -0.189 4.189 19 C -0.018 4.018 20 H 0.109 0.891 21 N -0.377 5.377 22 C -0.147 4.147 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.852 8.688 -9.831 15.290 hybrid contribution -0.586 -0.733 1.270 1.579 sum -8.438 7.955 -8.561 14.415 Atomic orbital electron populations 1.21747 0.96270 1.01291 1.00285 1.21604 0.94249 0.98956 1.01254 1.18932 0.94067 0.90722 0.84832 1.01744 1.21479 0.92861 1.36532 1.04175 0.93388 1.25698 1.02388 0.95297 0.95550 1.70004 1.36257 1.39977 1.09865 0.85583 0.80671 0.77508 0.78020 1.20401 1.20670 1.19599 1.60595 1.38065 1.03162 1.30020 1.21851 0.98110 0.88905 0.96000 1.21697 0.98002 0.94643 0.95750 0.91166 1.22079 0.94391 0.97611 1.01042 1.23129 0.98214 0.95618 1.01912 1.22361 0.93722 0.86913 0.98837 0.89074 1.58786 1.43317 1.27572 1.08040 1.22346 0.99280 0.93623 0.99488 0.94609 0.92579 0.92116 0.94408 0.91378 0.93057 0.85335 0.93910 0.97271 0.90975 0.93015 0.91972 0.90298 0.83591 0.84339 0.91704 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.76 71.98 0.70 -4.56 16 2 C -0.12 -5.87 5.35 30.59 0.16 -5.71 16 3 C 0.22 11.52 2.02 44.17 0.09 11.61 16 4 H -0.03 -2.02 7.83 -2.38 -0.02 -2.04 16 5 C -0.51 -29.33 8.64 25.60 0.22 -29.11 16 6 H 0.05 2.81 7.81 -2.92 -0.02 2.78 16 7 C 0.01 0.49 5.29 84.66 0.45 0.94 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 N -0.69 -29.56 6.27 -495.43 -3.11 -32.66 16 14 C 0.08 3.12 4.55 86.30 0.39 3.52 16 15 C -0.08 -2.40 3.15 -10.07 -0.03 -2.43 16 16 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.11 -2.75 6.04 31.32 0.19 -2.56 16 18 C -0.15 -2.86 6.49 31.67 0.21 -2.66 16 19 C 0.09 1.87 4.05 46.21 0.19 2.06 16 20 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 21 N -0.85 -14.90 9.38 -163.33 -1.53 -16.43 16 22 C -0.11 -2.78 6.02 31.67 0.19 -2.59 16 23 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.06 1.87 6.45 -2.39 -0.02 1.86 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 3.72 5.94 -2.39 -0.01 3.71 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.33 12.55 5.37 -89.70 -0.48 12.07 16 30 H 0.04 1.87 7.99 -2.38 -0.02 1.86 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.36 6.95 -2.39 -0.02 1.35 16 34 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.35 4.67 9.08 -89.70 -0.81 3.85 16 37 H 0.34 5.74 8.91 -89.70 -0.80 4.94 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16 Total: -1.00 -61.87 302.97 -0.67 -62.54 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -1.06 Total: 24.65 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 2.76 Total: -31.50 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -4.39 Total: -102.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -61.87 -0.67 -62.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.081 kcal (2) G-P(sol) polarization free energy of solvation -61.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds