Wall clock time and date at job start Sun Mar 29 2020 22:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46821 * 2 1 4 4 H 1.09005 * 109.47457 * 304.32621 * 3 2 1 5 5 C 1.50701 * 109.47117 * 184.33053 * 3 2 1 6 6 H 1.08006 * 119.99845 * 240.00035 * 5 3 2 7 7 C 1.37875 * 120.00084 * 59.99978 * 5 3 2 8 8 N 1.31510 * 120.00022 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99802 * 179.72892 * 7 5 3 10 10 H 1.48502 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47249 * 120.00091 * 9 7 5 12 12 H 1.48505 * 109.46921 * 240.00010 * 9 7 5 13 13 N 1.46900 * 109.47138 * 64.32851 * 3 2 1 14 14 C 1.46906 * 110.99863 * 205.87275 * 13 3 2 15 15 C 1.52998 * 109.46901 * 174.73228 * 14 13 3 16 16 H 1.09005 * 110.43592 * 307.54303 * 15 14 13 17 17 C 1.54890 * 110.48752 * 70.22649 * 15 14 13 18 18 C 1.54893 * 102.74893 * 156.62046 * 17 15 14 19 19 C 1.54270 * 104.19637 * 322.05671 * 18 17 15 20 20 H 1.08994 * 110.03042 * 142.89455 * 19 18 17 21 21 N 1.46901 * 110.07513 * 264.30523 * 19 18 17 22 22 C 1.53877 * 106.59653 * 23.61256 * 19 18 17 23 23 H 1.09005 * 109.46765 * 294.37582 * 1 2 3 24 24 H 1.08996 * 109.47327 * 54.38103 * 1 2 3 25 25 H 1.09005 * 109.47100 * 174.38238 * 1 2 3 26 26 H 1.08995 * 109.46876 * 240.00166 * 2 1 3 27 27 H 1.08993 * 109.47213 * 120.00095 * 2 1 3 28 28 H 0.96996 * 120.00129 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99932 * 81.92325 * 13 3 2 30 30 H 1.09001 * 109.47536 * 294.73403 * 14 13 3 31 31 H 1.09006 * 109.47075 * 54.73792 * 14 13 3 32 32 H 1.08993 * 110.75860 * 274.93449 * 17 15 14 33 33 H 1.08999 * 110.75579 * 38.30815 * 17 15 14 34 34 H 1.09006 * 110.48608 * 203.38192 * 18 17 15 35 35 H 1.08998 * 110.48430 * 80.73856 * 18 17 15 36 36 H 1.00894 * 110.99884 * 297.19054 * 21 19 18 37 37 H 1.00904 * 110.99728 * 61.14578 * 21 19 18 38 38 H 1.09001 * 110.03251 * 240.71643 * 22 19 18 39 39 H 1.08994 * 110.07554 * 119.30592 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6147 1.9783 -0.8487 5 6 3.5431 1.4439 -0.1073 6 1 4.1398 1.8916 0.6738 7 6 4.1567 0.8738 -1.2025 8 7 3.4301 0.3291 -2.1538 9 14 6.0197 0.8823 -1.3391 10 1 6.6001 1.5573 -0.1505 11 1 6.5174 -0.5151 -1.4076 12 1 6.4225 1.6121 -2.5681 13 7 1.6375 2.1041 1.2483 14 6 1.5404 3.5585 1.0656 15 6 0.9943 4.1977 2.3439 16 1 0.0684 3.7095 2.6480 17 6 2.0464 4.1255 3.4784 18 6 1.6190 5.2827 4.4151 19 6 1.1621 6.3989 3.4533 20 1 0.3047 6.9252 3.8726 21 7 2.2635 7.3415 3.2153 22 6 0.7649 5.7091 2.1364 23 1 -0.3633 0.4242 0.9361 24 1 -0.3634 0.5985 -0.8354 25 1 -0.3633 -1.0228 -0.1006 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8617 -0.0723 -2.9241 29 1 2.2713 1.8755 1.9993 30 1 2.5288 3.9645 0.8500 31 1 0.8690 3.7764 0.2350 32 1 1.9905 3.1683 3.9966 33 1 3.0492 4.2959 3.0866 34 1 2.4641 5.6190 5.0159 35 1 0.7946 4.9700 5.0559 36 1 2.5359 7.8026 4.0704 37 1 3.0509 6.8771 2.7881 38 1 1.3899 6.0731 1.3209 39 1 -0.2852 5.9005 1.9157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577041955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:50 Heat of formation + Delta-G solvation = -48.778822 kcal Electronic energy + Delta-G solvation = -16245.754560 eV Core-core repulsion = 13799.788807 eV Total energy + Delta-G solvation = -2445.965753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85999 -37.77658 -34.84304 -33.54783 -32.18429 -30.04984 -28.68257 -27.24680 -24.96117 -23.81371 -21.50035 -20.90592 -20.54779 -18.74649 -17.26036 -16.80094 -16.49298 -15.83941 -15.51383 -15.34520 -14.74379 -14.45062 -14.00823 -13.92820 -13.46052 -13.17423 -13.12715 -12.85318 -12.72900 -12.53271 -12.24217 -12.07906 -11.95176 -11.69545 -11.53050 -11.48462 -11.38411 -11.13571 -10.94872 -10.48361 -9.54760 -9.04001 -8.06612 -6.29416 1.35452 1.37911 1.47868 2.38403 3.12497 3.48430 3.71956 3.79172 3.87116 4.16055 4.45795 4.57032 4.59904 4.61528 4.69213 4.72592 4.75526 4.77859 4.93114 4.98120 5.02001 5.11845 5.17539 5.21017 5.33155 5.40432 5.41705 5.50817 5.56476 5.65213 5.77298 6.10378 6.20038 6.30123 6.39181 6.63942 6.82901 7.02430 7.42320 8.89963 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.007015 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.994244 B = 3990.573761 C = 4705.555273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.219 3.781 4 H -0.005 1.005 5 C -0.558 4.558 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.080 3.920 15 C -0.079 4.079 16 H 0.079 0.921 17 C -0.118 4.118 18 C -0.148 4.148 19 C 0.092 3.908 20 H 0.089 0.911 21 N -0.850 5.850 22 C -0.112 4.112 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.328 0.672 30 H 0.006 0.994 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.348 0.652 37 H 0.340 0.660 38 H 0.058 0.942 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 8.798 11.440 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.597 4.597 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.307 5.307 14 C -0.050 4.050 15 C -0.098 4.098 16 H 0.097 0.903 17 C -0.155 4.155 18 C -0.187 4.187 19 C -0.020 4.020 20 H 0.107 0.893 21 N -0.380 5.380 22 C -0.151 4.151 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.077 0.923 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.820 9.005 10.670 14.771 hybrid contribution 2.605 -0.636 -0.079 2.682 sum -2.216 8.369 10.591 13.679 Atomic orbital electron populations 1.21543 0.96363 0.99518 1.00616 1.21358 0.94438 0.98331 1.00004 1.18946 0.91542 0.91567 0.86889 0.98686 1.22191 0.94042 1.37715 1.05781 0.93315 1.25683 1.02231 0.94782 0.95432 1.70014 1.36420 1.38714 1.09943 0.85626 0.80980 0.77847 0.77886 1.19452 1.20380 1.20795 1.60836 1.54447 1.07451 1.07917 1.21786 0.97297 0.88740 0.97164 1.21941 0.98902 0.95061 0.93904 0.90285 1.22481 0.97787 0.99017 0.96249 1.23151 1.01431 0.96313 0.97829 1.22021 0.94622 0.91385 0.93986 0.89309 1.58992 1.12762 1.33916 1.32285 1.22222 1.01706 0.93496 0.97669 0.92350 0.95224 0.93669 0.92187 0.95257 0.92866 0.85526 0.97583 0.93748 0.91665 0.93117 0.91119 0.90407 0.83869 0.84780 0.92338 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.10 -5.01 5.45 30.59 0.17 -4.85 16 3 C 0.22 11.15 1.98 44.17 0.09 11.24 16 4 H 0.00 -0.28 7.70 -2.38 -0.02 -0.30 16 5 C -0.56 -30.65 8.47 25.60 0.22 -30.43 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.63 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -52.76 11.30 21.45 0.24 -52.52 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.68 -28.42 5.75 -495.43 -2.85 -31.27 16 14 C 0.08 3.02 4.84 86.30 0.42 3.43 16 15 C -0.08 -2.24 3.09 -9.72 -0.03 -2.27 16 16 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 17 C -0.12 -2.99 5.75 31.89 0.18 -2.81 16 18 C -0.15 -2.87 6.52 31.67 0.21 -2.66 16 19 C 0.09 1.86 4.04 45.64 0.18 2.04 16 20 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 21 N -0.85 -16.72 9.12 -165.67 -1.51 -18.23 16 22 C -0.11 -2.79 6.11 31.32 0.19 -2.60 16 23 H 0.06 2.24 7.89 -2.38 -0.02 2.22 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 26 H 0.06 3.30 5.97 -2.39 -0.01 3.29 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.33 13.54 7.89 -89.69 -0.71 12.84 16 30 H 0.01 0.25 7.99 -2.39 -0.02 0.23 16 31 H 0.04 1.77 7.92 -2.38 -0.02 1.75 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 34 H 0.07 1.23 8.03 -2.38 -0.02 1.21 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.35 5.34 9.06 -89.70 -0.81 4.53 16 37 H 0.34 7.07 8.97 -89.69 -0.80 6.26 16 38 H 0.06 1.64 7.60 -2.39 -0.02 1.62 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -58.69 306.46 -0.61 -59.31 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -1.30 Total: 28.74 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 2.77 Total: -31.78 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.11 Total: -102.02 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -58.69 -0.61 -59.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.528 kcal (2) G-P(sol) polarization free energy of solvation -58.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds