Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 H 1.08998 * 109.46852 * 55.13586 * 3 2 1 5 5 C 1.50700 * 109.46632 * 175.13717 * 3 2 1 6 6 H 1.08000 * 120.00158 * 120.00033 * 5 3 2 7 7 C 1.37880 * 120.00085 * 299.99366 * 5 3 2 8 8 N 1.31519 * 119.99802 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00206 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47079 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46673 * 120.00254 * 9 7 5 12 12 H 1.48497 * 109.47387 * 240.00041 * 9 7 5 13 13 N 1.46898 * 109.46939 * 295.13223 * 3 2 1 14 14 C 1.46904 * 110.99825 * 154.13547 * 13 3 2 15 15 C 1.52994 * 109.47132 * 184.74392 * 14 13 3 16 16 H 1.08996 * 110.64476 * 51.84878 * 15 14 13 17 17 C 1.54938 * 110.72347 * 288.50001 * 15 14 13 18 18 N 1.48538 * 103.22700 * 204.22556 * 17 15 14 19 19 C 1.47903 * 105.81688 * 39.21409 * 18 17 15 20 20 C 1.53995 * 107.05841 * 334.66185 * 19 18 17 21 21 H 1.09001 * 110.30446 * 120.14424 * 20 19 18 22 22 C 1.52996 * 110.39564 * 242.27370 * 20 19 18 23 23 H 1.08996 * 109.47390 * 305.11329 * 1 2 3 24 24 H 1.09001 * 109.46894 * 65.11259 * 1 2 3 25 25 H 1.08998 * 109.47407 * 185.10628 * 1 2 3 26 26 H 1.09002 * 109.47075 * 240.00154 * 2 1 3 27 27 H 1.08998 * 109.46958 * 120.00025 * 2 1 3 28 28 H 0.96998 * 119.99858 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00287 * 278.08742 * 13 3 2 30 30 H 1.09000 * 109.46690 * 64.74542 * 14 13 3 31 31 H 1.09003 * 109.46760 * 304.74682 * 14 13 3 32 32 H 1.08996 * 110.66818 * 322.66598 * 17 15 14 33 33 H 1.09001 * 110.66719 * 85.62714 * 17 15 14 34 34 H 1.00899 * 111.00272 * 278.69281 * 18 17 15 35 35 H 1.09003 * 109.91498 * 215.31698 * 19 18 17 36 36 H 1.08999 * 109.92214 * 94.01953 * 19 18 17 37 37 H 1.09001 * 109.47273 * 177.15709 * 22 20 19 38 38 H 1.09003 * 109.46570 * 297.15324 * 22 20 19 39 39 H 1.08994 * 109.47570 * 57.15237 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9808 0.8432 5 6 3.5421 1.4442 0.1204 6 1 4.1457 1.8894 -0.6567 7 6 4.1460 0.8775 1.2228 8 7 3.4110 0.3350 2.1690 9 14 6.0080 0.8802 1.3725 10 1 6.5991 1.5471 0.1846 11 1 6.4047 1.6147 2.6007 12 1 6.5003 -0.5186 1.4516 13 7 1.6486 2.1002 -1.2539 14 6 1.5501 3.5552 -1.0767 15 6 1.0277 4.1918 -2.3661 16 1 0.1124 3.6994 -2.6944 17 6 2.1076 4.1468 -3.4763 18 7 1.7200 5.2659 -4.3729 19 6 1.2729 6.3592 -3.4829 20 6 0.7941 5.7077 -2.1723 21 1 1.3804 6.0762 -1.3305 22 6 -0.6924 5.9914 -1.9477 23 1 -0.3634 0.5911 0.8406 24 1 -0.3633 0.4325 -0.9323 25 1 -0.3634 -1.0236 0.0915 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8358 -0.0640 2.9444 29 1 2.2889 1.8692 -1.9986 30 1 2.5350 3.9604 -0.8446 31 1 0.8643 3.7760 -0.2587 32 1 3.0988 4.3163 -3.0559 33 1 2.0739 3.1956 -4.0075 34 1 0.9819 4.9865 -5.0016 35 1 0.4515 6.9043 -3.9481 36 1 2.1030 7.0357 -3.2797 37 1 -1.0271 5.4822 -1.0439 38 1 -0.8447 7.0651 -1.8374 39 1 -1.2646 5.6292 -2.8018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577042860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -39.871196 kcal Electronic energy + Delta-G solvation = -16342.467266 eV Core-core repulsion = 13896.887777 eV Total energy + Delta-G solvation = -2445.579489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14984 -37.78658 -34.57700 -33.25166 -32.74447 -30.40212 -28.06573 -26.62484 -25.08799 -24.06499 -21.94003 -21.50347 -20.48942 -18.75902 -17.34574 -16.78995 -16.45491 -15.79326 -15.54675 -14.83252 -14.64426 -14.46523 -14.11987 -13.51074 -13.49027 -13.41003 -13.13999 -13.09779 -12.82708 -12.74225 -12.54228 -12.17809 -12.02721 -11.81296 -11.55558 -11.46725 -11.45074 -11.20068 -10.96756 -10.48638 -9.51684 -9.06714 -8.07424 -6.29874 1.35277 1.38169 1.48185 2.38313 3.11906 3.31376 3.56353 3.77735 4.01421 4.05032 4.39899 4.43940 4.50937 4.59581 4.61075 4.73909 4.75244 4.85950 4.88088 4.94143 4.95991 5.05819 5.15920 5.19896 5.23303 5.28410 5.40643 5.46732 5.51727 5.63227 5.76315 5.79671 6.09593 6.19103 6.37201 6.50695 6.80955 7.00866 7.41865 8.89273 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026782 B = 0.007123 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.232687 B = 3929.954329 C = 4493.545907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.559 4.559 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.086 3.914 15 C -0.103 4.103 16 H 0.082 0.918 17 C 0.051 3.949 18 N -0.679 5.679 19 C 0.050 3.950 20 C -0.120 4.120 21 H 0.063 0.937 22 C -0.135 4.135 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.329 0.671 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.345 0.655 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 8.737 -9.551 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.044 4.044 15 C -0.123 4.123 16 H 0.101 0.899 17 C -0.079 4.079 18 N -0.306 5.306 19 C -0.080 4.080 20 C -0.141 4.141 21 H 0.082 0.918 22 C -0.192 4.192 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.248 8.812 -9.445 14.349 hybrid contribution 1.269 -0.316 1.149 1.741 sum -4.979 8.497 -8.296 12.877 Atomic orbital electron populations 1.21540 0.96384 0.99547 1.00558 1.21358 0.94414 0.98300 1.00051 1.18934 0.91562 0.91597 0.86726 0.98631 1.22204 0.94101 1.37901 1.05610 0.93283 1.25671 1.02140 0.94767 0.95484 1.70015 1.36358 1.38813 1.09867 0.85638 0.81046 0.77861 0.77873 1.19520 1.20797 1.20346 1.60845 1.54278 1.07267 1.08219 1.21655 0.97306 0.88805 0.96669 1.22704 0.99368 0.95031 0.95228 0.89933 1.23046 0.97631 0.94468 0.92766 1.62699 1.42173 1.07892 1.17841 1.22810 0.99789 0.94389 0.91001 1.22412 0.98058 0.94352 0.99257 0.91801 1.21771 0.93852 1.01961 1.01623 0.95258 0.92364 0.93662 0.95187 0.92174 0.92861 0.85438 0.97611 0.93594 0.92271 0.90256 0.83897 0.89506 0.91315 0.93588 0.91253 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.74 71.98 0.70 -4.29 16 2 C -0.10 -4.96 5.45 30.60 0.17 -4.80 16 3 C 0.22 11.11 1.98 44.17 0.09 11.19 16 4 H 0.00 -0.24 7.71 -2.39 -0.02 -0.26 16 5 C -0.56 -30.60 8.46 25.60 0.22 -30.38 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.64 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.53 11.29 21.45 0.24 -52.29 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.68 -28.00 5.76 -495.45 -2.86 -30.86 16 14 C 0.09 3.21 4.87 86.30 0.42 3.63 16 15 C -0.10 -2.90 2.83 -9.59 -0.03 -2.92 16 16 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 17 C 0.05 1.37 6.47 86.65 0.56 1.93 16 18 N -0.68 -15.64 7.51 -502.18 -3.77 -19.41 16 19 C 0.05 1.04 7.18 86.45 0.62 1.67 16 20 C -0.12 -2.87 3.16 -9.91 -0.03 -2.90 16 21 H 0.06 1.69 7.85 -2.39 -0.02 1.68 16 22 C -0.13 -2.70 8.89 71.98 0.64 -2.06 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 2.21 7.89 -2.39 -0.02 2.19 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 3.29 5.95 -2.39 -0.01 3.27 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 13.39 7.94 -89.69 -0.71 12.67 16 30 H 0.01 0.23 7.96 -2.39 -0.02 0.22 16 31 H 0.05 1.80 7.94 -2.39 -0.02 1.79 16 32 H 0.06 1.84 7.94 -2.39 -0.02 1.83 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.34 6.63 8.92 -89.69 -0.80 5.83 16 35 H 0.09 1.43 7.69 -2.39 -0.02 1.41 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -58.43 306.58 -1.06 -59.49 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.50 Total: 24.67 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.80 Total: -27.40 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -6.39 Total: -102.56 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -58.43 -1.06 -59.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577042860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.621 kcal (2) G-P(sol) polarization free energy of solvation -58.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds