Wall clock time and date at job start Sun Mar 29 2020 21:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36533 * 119.93410 * 2 1 4 4 C 1.40700 * 118.90834 * 180.02562 * 3 2 1 5 5 O 1.21992 * 120.64586 * 179.97438 * 4 3 2 6 6 N 1.35025 * 118.70984 * 359.93347 * 4 3 2 7 7 N 1.36600 * 120.13200 * 180.29749 * 6 4 3 8 8 C 1.36285 * 119.74415 * 0.02562 * 6 4 3 9 9 S 1.76200 * 119.43397 * 179.97438 * 8 6 4 10 10 C 1.76195 * 100.00036 * 180.02562 * 9 8 6 11 11 H 1.08008 * 120.00162 * 0.02562 * 10 9 8 12 12 C 1.38858 * 120.00466 * 179.97438 * 10 9 8 13 13 N 1.31490 * 119.99451 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00555 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47078 * 90.00107 * 14 12 10 16 16 H 1.48496 * 109.47389 * 210.00349 * 14 12 10 17 17 H 1.48502 * 109.47069 * 330.00056 * 14 12 10 18 18 N 1.31820 * 121.12797 * 0.02562 * 8 6 4 19 19 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47310 * 300.02324 * 1 2 3 21 21 H 1.09004 * 109.46665 * 60.02291 * 1 2 3 22 22 H 1.07994 * 120.55037 * 0.02562 * 3 2 1 23 23 H 1.00902 * 110.99132 * 359.72715 * 7 6 4 24 24 H 1.00892 * 111.00150 * 123.67696 * 7 6 4 25 25 H 0.97000 * 119.99707 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.1832 0.0000 4 6 3.5951 1.1580 -0.0006 5 8 4.2356 2.1962 -0.0010 6 7 4.2224 -0.0377 0.0003 7 7 5.5871 -0.0960 0.0059 8 6 3.4887 -1.1862 0.0012 9 16 4.3157 -2.7420 0.0016 10 6 2.9272 -3.8266 0.0019 11 1 1.9258 -3.4220 0.0014 12 6 3.1202 -5.2017 0.0017 13 7 4.3393 -5.6944 0.0019 14 14 1.6481 -6.3517 0.0028 15 1 1.2571 -6.6564 -1.3970 16 1 2.0049 -7.6119 0.7026 17 1 0.5121 -5.7008 0.7036 18 7 2.1709 -1.1530 0.0006 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8902 22 1 1.6562 2.1230 0.0004 23 1 5.9885 0.8297 0.0045 24 1 5.9228 -0.6344 0.7904 25 1 4.4742 -6.6550 0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003771436.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:49 Heat of formation + Delta-G solvation = -0.227780 kcal Electronic energy + Delta-G solvation = -13314.879455 eV Core-core repulsion = 10840.846710 eV Total energy + Delta-G solvation = -2474.032745 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.63815 -38.73767 -37.50563 -34.79699 -32.94077 -31.40400 -28.54032 -27.81440 -25.91308 -23.38115 -20.45133 -19.55191 -19.13893 -18.04952 -17.60418 -16.97316 -16.23609 -15.93416 -15.23148 -14.92243 -14.62001 -14.15623 -13.87355 -13.33837 -13.16269 -12.98856 -12.95550 -12.45875 -12.05906 -11.35102 -11.33053 -10.95795 -10.80382 -10.39496 -9.64759 -8.83925 -8.56025 -6.37167 -0.40972 0.53682 0.78528 1.30199 1.43348 1.46118 1.58374 2.09564 2.55859 2.83845 2.90683 3.46271 3.62254 3.88790 4.22874 4.54238 4.81881 4.88368 4.95525 5.25245 5.40988 5.50379 5.79858 5.88451 6.28741 6.84653 6.90582 6.94686 8.51932 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.009401 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.231847 B = 2977.844051 C = 3769.895004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.204 3.796 3 C -0.359 4.359 4 C 0.499 3.501 5 O -0.602 6.602 6 N -0.358 5.358 7 N -0.600 5.600 8 C 0.322 3.678 9 S 0.197 5.803 10 C -0.571 4.571 11 H 0.111 0.889 12 C 0.036 3.964 13 N -0.898 5.898 14 Si 0.998 3.002 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.261 1.261 18 N -0.556 5.556 19 H 0.074 0.926 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.164 0.836 23 H 0.383 0.617 24 H 0.368 0.632 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 4.581 1.412 6.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.071 3.929 3 C -0.391 4.391 4 C 0.302 3.698 5 O -0.488 6.488 6 N -0.166 5.166 7 N -0.234 5.234 8 C -0.042 4.042 9 S 0.440 5.560 10 C -0.719 4.719 11 H 0.129 0.871 12 C -0.171 4.171 13 N -0.532 5.532 14 Si 0.819 3.181 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.185 1.185 18 N -0.287 5.287 19 H 0.093 0.907 20 H 0.123 0.877 21 H 0.122 0.878 22 H 0.182 0.818 23 H 0.203 0.797 24 H 0.187 0.813 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.218 3.629 0.736 4.906 hybrid contribution -1.044 0.943 0.851 1.644 sum -4.262 4.572 1.587 6.448 Atomic orbital electron populations 1.20875 0.85389 1.04568 1.04965 1.21831 0.99196 0.87228 0.84624 1.22300 0.91124 1.01267 1.24431 1.17873 0.90710 0.81823 0.79378 1.90822 1.68979 1.31041 1.57922 1.45468 1.03956 1.07061 1.60115 1.60163 0.88736 1.24147 1.50379 1.26543 0.91199 0.93657 0.92804 1.83687 1.08963 0.85127 1.78242 1.23860 0.95995 0.92785 1.59258 0.87117 1.26047 1.00260 0.98691 0.92146 1.69949 1.22374 1.15305 1.45605 0.84941 0.77463 0.76640 0.79033 1.19242 1.19769 1.18512 1.68918 1.02895 1.28353 1.28513 0.90695 0.87713 0.87786 0.81832 0.79675 0.81306 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 10.16 71.24 0.72 -1.74 15 2 C 0.20 7.16 6.77 41.98 0.28 7.45 15 3 C -0.36 -12.91 9.72 22.47 0.22 -12.70 15 4 C 0.50 20.48 7.55 84.80 0.64 21.12 15 5 O -0.60 -26.61 16.60 -5.29 -0.09 -26.69 15 6 N -0.36 -14.25 3.50 -318.57 -1.12 -15.37 15 7 N -0.60 -20.27 9.62 37.02 0.36 -19.91 15 8 C 0.32 13.83 7.84 179.48 1.41 15.23 15 9 S 0.20 8.99 20.56 -56.49 -1.16 7.83 15 10 C -0.57 -28.79 9.25 67.97 0.63 -28.16 15 11 H 0.11 5.62 6.53 -2.91 -0.02 5.60 15 12 C 0.04 1.79 5.49 84.89 0.47 2.26 15 13 N -0.90 -46.24 13.22 21.65 0.29 -45.95 15 14 Si 1.00 39.02 29.55 68.60 2.03 41.05 15 15 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 16 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 18 N -0.56 -23.43 8.36 -183.37 -1.53 -24.96 15 19 H 0.07 1.93 8.11 -2.39 -0.02 1.91 15 20 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.16 5.01 8.06 -2.91 -0.02 4.98 15 23 H 0.38 12.02 7.67 -210.55 -1.62 10.41 15 24 H 0.37 10.91 8.62 -210.57 -1.81 9.10 15 25 H 0.28 13.53 8.31 -92.71 -0.77 12.76 15 Total: -1.00 -61.00 243.09 0.96 -60.04 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -2.18 Total: 20.52 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.37 Total: 3.46 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.01 Total: -106.20 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.09 Total: -26.69 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 8.99 SS G_CDS: -1.16 Total: 7.83 kcal Total: -61.00 0.96 -60.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003771436.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.811 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds