Wall clock time and date at job start Sun Mar 29 2020 21:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86808 * 120.00123 * 2 1 4 4 H 1.48506 * 109.46839 * 269.99718 * 3 2 1 5 5 H 1.48500 * 109.46921 * 29.99837 * 3 2 1 6 6 H 1.48495 * 109.47089 * 149.99798 * 3 2 1 7 7 C 1.39050 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36875 * 119.99515 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99621 * 179.97438 * 9 7 2 11 11 O 1.21589 * 120.00191 * 0.02562 * 10 9 7 12 12 C 1.47738 * 119.99656 * 179.97438 * 10 9 7 13 13 C 1.39625 * 120.12236 * 180.02562 * 12 10 9 14 14 C 1.38184 * 119.86531 * 179.97438 * 13 12 10 15 15 F 1.35102 * 119.93270 * 179.97438 * 14 13 12 16 16 C 1.38539 * 120.13134 * 359.97438 * 14 13 12 17 17 C 1.38555 * 120.25752 * 0.02562 * 16 14 13 18 18 F 1.35103 * 119.93596 * 179.97438 * 17 16 14 19 19 C 1.38179 * 120.12460 * 359.97438 * 17 16 14 20 20 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00257 * 0.02562 * 9 7 2 22 22 H 1.07997 * 120.06844 * 359.70013 * 13 12 10 23 23 H 1.08005 * 119.87566 * 179.97438 * 16 14 13 24 24 H 1.08002 * 120.06010 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4002 5 1 1.4451 2.6527 0.7000 6 1 3.5452 1.4402 0.7001 7 6 2.0089 -1.2042 0.0005 8 1 3.0888 -1.2042 0.0010 9 7 1.3245 -2.3895 0.0005 10 6 1.9984 -3.5567 0.0005 11 8 3.2143 -3.5567 0.0010 12 6 1.2597 -4.8361 0.0011 13 6 1.9551 -6.0469 0.0017 14 6 1.2588 -7.2404 0.0027 15 9 1.9304 -8.4127 0.0027 16 6 -0.1266 -7.2373 0.0038 17 6 -0.8221 -6.0390 0.0033 18 9 -2.1731 -6.0435 0.0038 19 6 -0.1365 -4.8393 0.0022 20 1 -0.4850 0.8401 -0.0004 21 1 0.3545 -2.3895 -0.0002 22 1 3.0351 -6.0505 -0.0032 23 1 -0.6667 -8.1726 0.0042 24 1 -0.6796 -3.9058 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714235.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:10 Heat of formation + Delta-G solvation = -124.246750 kcal Electronic energy + Delta-G solvation = -14687.516680 eV Core-core repulsion = 11621.972931 eV Total energy + Delta-G solvation = -3065.543749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.07296 -50.05279 -40.88463 -38.86046 -36.20761 -33.63701 -32.11688 -31.35752 -27.45676 -25.01430 -23.79796 -21.63214 -20.36139 -19.16705 -18.19624 -17.49849 -17.29247 -17.06361 -16.64843 -16.53521 -16.36208 -15.77573 -15.55336 -15.38702 -14.74744 -13.82165 -13.59970 -13.11166 -13.09902 -12.85113 -12.83296 -12.47595 -12.12603 -11.64295 -10.67474 -10.25384 -10.11518 -9.89403 -8.62291 -6.06448 -0.46200 -0.13774 1.37093 1.42394 1.55429 1.77565 2.21862 2.52920 2.60881 2.98551 3.19180 3.24195 3.65864 3.71491 3.96991 4.09655 4.49008 4.64778 4.82382 4.90073 5.09095 5.30135 5.62661 5.84473 6.40356 6.94714 7.32188 7.88686 8.54213 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.040100 B = 0.006869 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.078532 B = 4075.193098 C = 4763.429291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.089 0.911 9 N -0.541 5.541 10 C 0.457 3.543 11 O -0.630 6.630 12 C -0.056 4.056 13 C -0.125 4.125 14 C 0.131 3.869 15 F -0.126 7.126 16 C -0.164 4.164 17 C 0.132 3.868 18 F -0.127 7.127 19 C -0.146 4.146 20 H 0.285 0.715 21 H 0.399 0.601 22 H 0.143 0.857 23 H 0.184 0.816 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -10.090 -0.007 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.107 0.893 9 N -0.175 5.175 10 C 0.247 3.753 11 O -0.520 6.520 12 C -0.060 4.060 13 C -0.145 4.145 14 C 0.111 3.889 15 F -0.105 7.105 16 C -0.184 4.184 17 C 0.113 3.887 18 F -0.105 7.105 19 C -0.166 4.166 20 H 0.095 0.905 21 H 0.235 0.765 22 H 0.161 0.839 23 H 0.201 0.799 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.672 -9.921 -0.002 10.579 hybrid contribution -0.181 0.714 -0.009 0.736 sum -3.853 -9.208 -0.011 9.982 Atomic orbital electron populations 1.69631 1.07121 1.30309 1.47207 1.26248 0.96611 1.02887 0.95137 0.84801 0.77952 0.75896 0.78975 1.19255 1.19172 1.19401 1.19875 0.93347 0.83477 1.49934 0.89283 1.41926 1.09767 1.04764 1.61049 1.18134 0.87285 0.84129 0.85772 1.90580 1.14793 1.87581 1.59043 1.19532 0.92762 0.93290 1.00405 1.21200 1.01941 0.89941 1.01449 1.16941 0.89473 0.80623 1.01828 1.91539 1.80309 1.44876 1.93765 1.21271 0.92441 0.99610 1.05061 1.16967 0.77149 0.93049 1.01556 1.91547 1.27943 1.97292 1.93720 1.21421 0.93356 0.98890 1.02959 0.90473 0.76466 0.83933 0.79890 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.47 13.05 21.68 0.28 -46.19 14 2 C -0.01 -0.33 5.50 84.96 0.47 0.14 14 3 Si 1.00 40.66 29.55 68.60 2.03 42.69 14 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 14 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 14 7 C -0.34 -18.59 9.68 84.10 0.81 -17.77 14 8 H 0.09 5.19 7.15 -2.91 -0.02 5.17 14 9 N -0.54 -27.63 5.23 -309.72 -1.62 -29.25 14 10 C 0.46 22.46 7.72 86.75 0.67 23.13 14 11 O -0.63 -35.36 15.92 -4.00 -0.06 -35.43 14 12 C -0.06 -2.14 5.87 -20.10 -0.12 -2.25 14 13 C -0.12 -4.18 9.57 22.59 0.22 -3.96 14 14 C 0.13 3.52 7.29 22.33 0.16 3.68 14 15 F -0.13 -3.22 17.26 44.97 0.78 -2.44 14 16 C -0.16 -3.78 10.00 22.42 0.22 -3.56 14 17 C 0.13 3.55 7.29 22.33 0.16 3.71 14 18 F -0.13 -3.27 17.26 44.97 0.78 -2.49 14 19 C -0.15 -4.73 9.52 22.59 0.21 -4.52 14 20 H 0.29 13.57 8.31 -92.71 -0.77 12.80 14 21 H 0.40 19.09 5.92 -92.71 -0.55 18.54 14 22 H 0.14 4.99 7.65 -2.91 -0.02 4.97 14 23 H 0.18 2.91 8.06 -2.91 -0.02 2.89 14 24 H 0.14 4.71 6.40 -2.91 -0.02 4.69 14 Total: -1.00 -60.77 235.53 5.71 -55.06 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.72 Total: 19.46 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 2.81 Total: -1.41 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.34 Total: -75.44 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.06 Total: -35.43 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.55 Total: -4.93 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -60.77 5.71 -55.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714235.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.190 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds