Wall clock time and date at job start Sun Mar 29 2020 21:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86803 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46890 * 270.00153 * 3 2 1 5 5 H 1.48490 * 109.46947 * 30.00359 * 3 2 1 6 6 H 1.48499 * 109.46849 * 150.00308 * 3 2 1 7 7 C 1.40128 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.46140 * 120.00068 * 359.97438 * 7 2 1 10 10 O 1.21750 * 120.00236 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00179 * 180.02562 * 9 7 2 12 12 C 1.39591 * 120.00059 * 185.52943 * 11 9 7 13 13 C 1.39020 * 120.08203 * 24.83737 * 12 11 9 14 14 C 1.38064 * 119.98703 * 179.71990 * 13 12 11 15 15 C 1.38356 * 120.14510 * 0.58100 * 14 13 12 16 16 C 1.38491 * 120.16180 * 359.68028 * 15 14 13 17 17 F 1.35099 * 119.99699 * 180.02562 * 16 15 14 18 18 C 1.38483 * 120.01486 * 0.03424 * 16 15 14 19 19 F 1.35094 * 120.07302 * 180.02562 * 18 16 15 20 20 H 0.96993 * 119.99876 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99905 * 5.24936 * 11 9 7 22 22 H 1.08001 * 120.00868 * 0.02562 * 13 12 11 23 23 H 1.07995 * 119.93262 * 180.27881 * 14 13 12 24 24 H 1.07996 * 119.91849 * 179.69443 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2763 -2.4792 -0.0005 10 8 0.0588 -2.4792 0.0004 11 7 1.9502 -3.6464 -0.0005 12 6 1.2571 -4.8524 -0.1170 13 6 0.0100 -4.8830 -0.7307 14 6 -0.6712 -6.0780 -0.8500 15 6 -0.1209 -7.2445 -0.3493 16 6 1.1186 -7.2201 0.2680 17 9 1.6530 -8.3612 0.7554 18 6 1.8103 -6.0262 0.3861 19 9 3.0197 -6.0012 0.9876 20 1 -0.4849 0.8400 0.0004 21 1 2.9172 -3.6481 0.0763 22 1 -0.4236 -3.9731 -1.1185 23 1 -1.6378 -6.1015 -1.3309 24 1 -0.6592 -8.1763 -0.4402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040451623.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:17 Heat of formation + Delta-G solvation = -104.973170 kcal Electronic energy + Delta-G solvation = -14996.210996 eV Core-core repulsion = 11931.503012 eV Total energy + Delta-G solvation = -3064.707984 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.03243 -48.09951 -39.15995 -36.96459 -33.63484 -32.61355 -29.76319 -29.16491 -26.40111 -22.84899 -22.31451 -20.13295 -18.05777 -17.46533 -16.85089 -16.35489 -15.91039 -15.42611 -14.96672 -14.56762 -14.34824 -14.10008 -13.82967 -13.26289 -12.75438 -12.19764 -11.75312 -11.52410 -11.43780 -11.16150 -11.14251 -10.76225 -10.42690 -9.66978 -9.04136 -8.34990 -7.89545 -7.31714 -6.48603 -4.96704 1.41987 1.56211 3.00783 3.08378 3.11930 3.80360 3.87487 4.10203 4.34330 4.50431 4.78912 5.15782 5.24380 5.46437 5.68455 5.92265 6.21580 6.33414 6.71743 6.85038 7.11043 7.18294 7.50835 7.77253 7.97801 8.71051 8.97815 10.17782 10.40557 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.053834 B = 0.006962 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.991037 B = 4020.982877 C = 4475.728744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.086 3.914 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.540 3.460 10 O -0.555 6.555 11 N -0.686 5.686 12 C 0.196 3.804 13 C -0.128 4.128 14 C -0.078 4.078 15 C -0.181 4.181 16 C 0.086 3.914 17 F -0.138 7.138 18 C -0.008 4.008 19 F -0.137 7.137 20 H 0.274 0.726 21 H 0.399 0.601 22 H 0.167 0.833 23 H 0.134 0.866 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -7.732 -1.702 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.348 3.652 10 O -0.438 6.438 11 N -0.327 5.327 12 C 0.093 3.907 13 C -0.149 4.149 14 C -0.097 4.097 15 C -0.201 4.201 16 C 0.065 3.935 17 F -0.117 7.117 18 C -0.032 4.032 19 F -0.116 7.116 20 H 0.085 0.915 21 H 0.233 0.767 22 H 0.185 0.815 23 H 0.152 0.848 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.595 -7.494 -1.653 7.698 hybrid contribution 1.307 0.478 0.354 1.436 sum 1.902 -7.016 -1.299 7.385 Atomic orbital electron populations 1.69961 1.07213 1.28163 1.32938 1.25767 0.94783 1.00679 0.92413 0.86211 0.80135 0.80500 0.79115 1.19430 1.20162 1.18664 1.20860 0.94027 0.88699 1.53195 0.90686 1.18445 0.87508 0.81820 0.77437 1.90584 1.13542 1.85648 1.53977 1.44242 1.10295 1.03891 1.74242 1.17912 0.93804 0.85299 0.93700 1.21731 0.93901 1.00073 0.99237 1.20957 0.99696 0.91071 0.98010 1.20810 0.94655 1.00263 1.04392 1.17339 0.94089 0.80501 1.01540 1.91461 1.86222 1.47913 1.86108 1.17382 0.85370 0.93712 1.06734 1.91428 1.41342 1.97131 1.81686 0.91472 0.76679 0.81539 0.84801 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.96 11.82 55.55 0.66 -20.31 14 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 14 3 Si 0.92 18.82 29.56 -169.99 -5.02 13.80 14 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 14 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 7 C -0.53 -14.03 9.53 -35.70 -0.34 -14.37 14 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 14 9 C 0.54 14.39 7.54 -13.09 -0.10 14.29 14 10 O -0.56 -16.30 12.17 5.14 0.06 -16.23 14 11 N -0.69 -15.32 5.29 -11.16 -0.06 -15.38 14 12 C 0.20 4.06 6.43 -83.69 -0.54 3.52 14 13 C -0.13 -2.54 8.71 -39.36 -0.34 -2.88 14 14 C -0.08 -1.23 10.04 -39.60 -0.40 -1.63 14 15 C -0.18 -2.70 10.02 -39.44 -0.40 -3.10 14 16 C 0.09 1.48 7.30 -39.40 -0.29 1.19 14 17 F -0.14 -2.32 17.18 2.25 0.04 -2.29 14 18 C -0.01 -0.15 7.32 -39.14 -0.29 -0.44 14 19 F -0.14 -2.62 16.73 2.25 0.04 -2.58 14 20 H 0.27 6.88 8.29 -40.82 -0.34 6.54 14 21 H 0.40 7.94 8.44 -40.82 -0.34 7.59 14 22 H 0.17 3.75 5.78 -52.49 -0.30 3.45 14 23 H 0.13 1.68 8.06 -52.49 -0.42 1.26 14 24 H 0.13 1.58 8.06 -52.49 -0.42 1.16 14 LS Contribution 232.95 15.07 3.51 3.51 Total: -1.00 -29.82 232.95 -4.60 -34.42 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -1.04 Total: 6.36 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.78 Total: -1.30 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.60 Total: -35.69 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.06 Total: -16.23 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.08 Total: -4.87 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.82 -4.60 -34.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040451623.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.549 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds