Wall clock time and date at job start Sun Mar 29 2020 21:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86803 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46890 * 270.00153 * 3 2 1 5 5 H 1.48490 * 109.46947 * 30.00359 * 3 2 1 6 6 H 1.48499 * 109.46849 * 150.00308 * 3 2 1 7 7 C 1.40128 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.46140 * 120.00068 * 359.97438 * 7 2 1 10 10 O 1.21750 * 120.00236 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00179 * 180.02562 * 9 7 2 12 12 C 1.39591 * 120.00059 * 185.52943 * 11 9 7 13 13 C 1.39020 * 120.08203 * 24.83737 * 12 11 9 14 14 C 1.38064 * 119.98703 * 179.71990 * 13 12 11 15 15 C 1.38356 * 120.14510 * 0.58100 * 14 13 12 16 16 C 1.38491 * 120.16180 * 359.68028 * 15 14 13 17 17 F 1.35099 * 119.99699 * 180.02562 * 16 15 14 18 18 C 1.38483 * 120.01486 * 0.03424 * 16 15 14 19 19 F 1.35094 * 120.07302 * 180.02562 * 18 16 15 20 20 H 0.96993 * 119.99876 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99905 * 5.24936 * 11 9 7 22 22 H 1.08001 * 120.00868 * 0.02562 * 13 12 11 23 23 H 1.07995 * 119.93262 * 180.27881 * 14 13 12 24 24 H 1.07996 * 119.91849 * 179.69443 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2763 -2.4792 -0.0005 10 8 0.0588 -2.4792 0.0004 11 7 1.9502 -3.6464 -0.0005 12 6 1.2571 -4.8524 -0.1170 13 6 0.0100 -4.8830 -0.7307 14 6 -0.6712 -6.0780 -0.8500 15 6 -0.1209 -7.2445 -0.3493 16 6 1.1186 -7.2201 0.2680 17 9 1.6530 -8.3612 0.7554 18 6 1.8103 -6.0262 0.3861 19 9 3.0197 -6.0012 0.9876 20 1 -0.4849 0.8400 0.0004 21 1 2.9172 -3.6481 0.0763 22 1 -0.4236 -3.9731 -1.1185 23 1 -1.6378 -6.1015 -1.3309 24 1 -0.6592 -8.1763 -0.4402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040451623.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:17 Heat of formation + Delta-G solvation = -124.582753 kcal Electronic energy + Delta-G solvation = -14997.061332 eV Core-core repulsion = 11931.503012 eV Total energy + Delta-G solvation = -3065.558319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.45675 -49.54159 -40.81701 -38.67701 -35.42300 -34.59608 -31.19323 -30.77149 -28.30631 -24.43970 -23.75970 -21.91336 -19.82588 -18.96968 -18.36252 -18.05503 -17.43239 -17.17139 -16.46943 -16.02786 -15.90375 -15.69399 -15.26751 -15.03995 -14.60448 -13.71583 -13.35778 -13.21042 -12.95359 -12.78224 -12.73097 -12.53736 -12.04750 -11.30804 -10.94963 -10.00793 -9.67911 -8.96386 -8.42703 -7.01531 -0.01433 0.13384 1.39936 1.40465 1.56655 2.15896 2.24043 2.48474 2.61118 2.96083 3.39711 3.47728 3.78602 3.89471 4.35614 4.45571 4.86051 5.01535 5.20210 5.26720 5.38913 5.63644 5.69903 6.04026 6.11529 6.71890 7.12373 8.20226 8.49334 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.053834 B = 0.006962 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.991037 B = 4020.982877 C = 4475.728744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.562 4.562 8 H 0.091 0.909 9 C 0.529 3.471 10 O -0.593 6.593 11 N -0.686 5.686 12 C 0.163 3.837 13 C -0.148 4.148 14 C -0.061 4.061 15 C -0.152 4.152 16 C 0.084 3.916 17 F -0.133 7.133 18 C -0.015 4.015 19 F -0.141 7.141 20 H 0.281 0.719 21 H 0.407 0.593 22 H 0.134 0.866 23 H 0.173 0.827 24 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -8.713 -1.923 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.185 4.185 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.597 4.597 8 H 0.109 0.891 9 C 0.337 3.663 10 O -0.479 6.479 11 N -0.328 5.328 12 C 0.063 3.937 13 C -0.169 4.169 14 C -0.079 4.079 15 C -0.172 4.172 16 C 0.064 3.936 17 F -0.112 7.112 18 C -0.039 4.039 19 F -0.120 7.120 20 H 0.091 0.909 21 H 0.242 0.758 22 H 0.152 0.848 23 H 0.190 0.810 24 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.780 -8.539 -1.876 8.777 hybrid contribution 1.202 0.583 0.407 1.397 sum 1.983 -7.956 -1.470 8.330 Atomic orbital electron populations 1.70094 1.09385 1.29718 1.34138 1.26964 0.95639 1.04828 0.91061 0.84945 0.78681 0.74713 0.79610 1.18362 1.19494 1.17491 1.21384 0.95075 0.89418 1.53822 0.89059 1.18716 0.87303 0.83213 0.77064 1.90548 1.15001 1.86692 1.55643 1.43804 1.10568 1.03796 1.74644 1.18090 0.94678 0.85174 0.95793 1.21596 0.94235 1.00719 1.00395 1.21314 1.00476 0.89510 0.96639 1.21286 0.93221 1.01587 1.01064 1.17516 0.94647 0.79880 1.01560 1.91481 1.86305 1.47351 1.86045 1.17486 0.85445 0.94008 1.06945 1.91410 1.41631 1.97182 1.81794 0.90879 0.75775 0.84847 0.80969 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.03 11.82 21.85 0.26 -45.77 14 2 C 0.03 1.71 5.50 85.33 0.47 2.18 14 3 Si 1.00 38.58 29.56 68.60 2.03 40.61 14 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 14 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 14 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 14 7 C -0.56 -30.33 9.53 24.78 0.24 -30.10 14 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 14 9 C 0.53 29.38 7.54 86.29 0.65 30.04 14 10 O -0.59 -36.57 12.17 -4.51 -0.05 -36.62 14 11 N -0.69 -31.79 5.29 -307.40 -1.63 -33.41 14 12 C 0.16 6.89 6.43 38.32 0.25 7.13 14 13 C -0.15 -5.92 8.71 22.42 0.20 -5.72 14 14 C -0.06 -1.74 10.04 22.26 0.22 -1.52 14 15 C -0.15 -3.91 10.02 22.36 0.22 -3.68 14 16 C 0.08 2.68 7.30 22.39 0.16 2.85 14 17 F -0.13 -4.08 17.18 44.97 0.77 -3.31 14 18 C -0.02 -0.57 7.32 22.55 0.17 -0.40 14 19 F -0.14 -5.37 16.73 44.97 0.75 -4.61 14 20 H 0.28 14.46 8.29 -92.71 -0.77 13.69 14 21 H 0.41 16.78 8.44 -92.70 -0.78 16.00 14 22 H 0.13 6.31 5.78 -2.91 -0.02 6.30 14 23 H 0.17 3.61 8.06 -2.91 -0.02 3.58 14 24 H 0.18 3.09 8.06 -2.91 -0.02 3.06 14 Total: -1.00 -67.04 232.95 5.19 -61.85 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.48 Total: 20.50 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 2.57 Total: 0.77 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.37 Total: -79.19 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 9 Polarization: -9.45 SS G_CDS: 1.53 Total: -7.92 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -67.04 5.19 -61.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040451623.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.728 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds