Wall clock time and date at job start Sun Mar 29 2020 21:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99809 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99969 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99769 * 3 2 1 7 7 C 1.39035 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00445 * 0.02562 * 7 2 1 9 9 N 1.36895 * 119.99546 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99365 * 180.02562 * 9 7 2 11 11 O 1.21602 * 120.00195 * 359.73002 * 10 9 7 12 12 C 1.47596 * 119.99575 * 180.02562 * 10 9 7 13 13 C 1.39752 * 120.15856 * 359.44721 * 12 10 9 14 14 C 1.37828 * 119.91295 * 179.74332 * 13 12 10 15 15 C 1.38462 * 120.24728 * 0.56050 * 14 13 12 16 16 C 1.38402 * 120.32580 * 359.69644 * 15 14 13 17 17 F 1.35098 * 119.95946 * 180.02562 * 16 15 14 18 18 C 1.38515 * 120.07933 * 0.02562 * 16 15 14 19 19 F 1.35101 * 120.12513 * 179.97438 * 18 16 15 20 20 H 0.97004 * 119.99566 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00711 * 0.02562 * 9 7 2 22 22 H 1.08001 * 120.04210 * 0.03093 * 13 12 10 23 23 H 1.08000 * 119.87500 * 180.25972 * 14 13 12 24 24 H 1.07998 * 119.83690 * 179.72271 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0463 -1.4001 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.7001 7 6 2.0089 -1.2041 0.0005 8 1 1.4689 -2.1394 0.0005 9 7 3.3778 -1.2041 0.0000 10 6 4.0516 -2.3714 0.0000 11 8 3.4436 -3.4244 0.0054 12 6 5.5276 -2.3714 0.0000 13 6 6.2297 -1.1631 -0.0116 14 6 7.6079 -1.1689 -0.0062 15 6 8.3003 -2.3680 -0.0010 16 6 7.6152 -3.5705 0.0052 17 9 8.2982 -4.7361 0.0108 18 6 6.2301 -3.5804 0.0056 19 9 5.5604 -4.7537 0.0112 20 1 -0.4850 0.8401 -0.0004 21 1 3.8629 -0.3641 -0.0004 22 1 5.6930 -0.2259 -0.0202 23 1 8.1499 -0.2347 -0.0110 24 1 9.3803 -2.3648 -0.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054205979.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:13 Heat of formation + Delta-G solvation = -94.968694 kcal Electronic energy + Delta-G solvation = -15010.059786 eV Core-core repulsion = 11945.785629 eV Total energy + Delta-G solvation = -3064.274157 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.19687 -48.17329 -39.30424 -37.53837 -34.24443 -32.08478 -30.83465 -30.16980 -25.60421 -23.44835 -22.45958 -19.92795 -19.05909 -17.66373 -17.02038 -16.58062 -16.08717 -15.59156 -15.10507 -14.67059 -14.66499 -14.13195 -13.69934 -13.65498 -13.00141 -12.72762 -12.40413 -11.92685 -11.86319 -11.44859 -11.36621 -10.77107 -10.18025 -9.81876 -8.90451 -8.74274 -8.62050 -8.41008 -6.57838 -3.99428 0.78093 1.04935 2.86605 2.91811 3.01046 3.16481 3.81112 3.89085 4.09981 4.37404 4.49577 4.77266 4.86341 5.06253 5.09319 5.34926 5.79166 5.88691 5.98728 6.13337 6.24740 6.82801 7.30638 7.90965 8.34467 8.70324 9.15180 9.61597 10.53192 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.008067 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.469581 B = 3470.243883 C = 4114.859976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.043 3.957 3 Si 0.880 3.120 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.296 4.296 8 H 0.126 0.874 9 N -0.561 5.561 10 C 0.468 3.532 11 O -0.565 6.565 12 C -0.105 4.105 13 C -0.095 4.095 14 C -0.105 4.105 15 C -0.130 4.130 16 C 0.058 3.942 17 F -0.132 7.132 18 C 0.109 3.891 19 F -0.106 7.106 20 H 0.279 0.721 21 H 0.372 0.628 22 H 0.136 0.864 23 H 0.140 0.860 24 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.652 2.595 -0.052 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.424 4.424 8 H 0.144 0.856 9 N -0.198 5.198 10 C 0.256 3.744 11 O -0.448 6.448 12 C -0.111 4.111 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.149 4.149 16 C 0.038 3.962 17 F -0.111 7.111 18 C 0.087 3.913 19 F -0.084 7.084 20 H 0.090 0.910 21 H 0.207 0.793 22 H 0.154 0.846 23 H 0.158 0.842 24 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.947 1.932 -0.048 15.071 hybrid contribution 0.565 0.972 0.022 1.124 sum 15.512 2.903 -0.027 15.782 Atomic orbital electron populations 1.69603 1.05832 1.28290 1.45834 1.25163 0.95636 0.98414 0.97069 0.86654 0.79991 0.83477 0.79374 1.19015 1.19552 1.19164 1.19608 0.79048 0.97129 1.46639 0.85599 1.42188 1.07690 1.06215 1.63727 1.17212 0.84941 0.84998 0.87253 1.90727 1.68490 1.30289 1.55339 1.20397 0.96124 0.91723 1.02807 1.21314 0.94339 0.97089 0.98685 1.20911 0.93702 0.97727 0.99946 1.21037 1.00877 0.90291 1.02724 1.17577 0.87971 0.82716 1.07973 1.91506 1.79238 1.46072 1.94245 1.17622 0.87769 0.82475 1.03457 1.91601 1.80092 1.43711 1.92982 0.90979 0.79344 0.84632 0.84233 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.78 13.95 55.50 0.77 -23.00 14 2 C 0.04 1.13 5.50 -17.45 -0.10 1.03 14 3 Si 0.88 18.02 27.74 -169.99 -4.71 13.31 14 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.27 -4.87 6.52 56.52 0.37 -4.50 14 7 C -0.30 -8.12 10.16 -15.00 -0.15 -8.27 14 8 H 0.13 3.96 7.38 -52.49 -0.39 3.57 14 9 N -0.56 -13.26 5.04 -11.91 -0.06 -13.32 14 10 C 0.47 11.22 7.72 -12.44 -0.10 11.12 14 11 O -0.56 -16.00 14.91 5.28 0.08 -15.93 14 12 C -0.11 -2.00 5.88 -104.92 -0.62 -2.61 14 13 C -0.09 -1.36 9.54 -39.17 -0.37 -1.73 14 14 C -0.10 -1.16 10.02 -39.65 -0.40 -1.56 14 15 C -0.13 -1.50 10.01 -39.44 -0.39 -1.90 14 16 C 0.06 0.88 7.30 -39.42 -0.29 0.59 14 17 F -0.13 -2.01 17.18 2.25 0.04 -1.98 14 18 C 0.11 2.03 7.29 -38.88 -0.28 1.75 14 19 F -0.11 -2.28 15.46 2.25 0.03 -2.25 14 20 H 0.28 7.07 8.31 -40.82 -0.34 6.73 14 21 H 0.37 7.49 3.79 -40.82 -0.15 7.33 14 22 H 0.14 1.74 6.40 -52.49 -0.34 1.41 14 23 H 0.14 1.03 8.06 -52.49 -0.42 0.61 14 24 H 0.14 1.19 8.06 -52.49 -0.42 0.76 14 LS Contribution 230.44 15.07 3.47 3.47 Total: -1.00 -31.40 230.44 -3.97 -35.37 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -0.89 Total: 5.89 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.70 Total: -1.57 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.71 Total: -36.32 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.07 Total: -4.22 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -4.71 Total: 13.31 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.40 -3.97 -35.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054205979.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.600 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds