Wall clock time and date at job start Sun Mar 29 2020 21:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99809 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99969 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99769 * 3 2 1 7 7 C 1.39035 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00445 * 0.02562 * 7 2 1 9 9 N 1.36895 * 119.99546 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99365 * 180.02562 * 9 7 2 11 11 O 1.21602 * 120.00195 * 359.73002 * 10 9 7 12 12 C 1.47596 * 119.99575 * 180.02562 * 10 9 7 13 13 C 1.39752 * 120.15856 * 359.44721 * 12 10 9 14 14 C 1.37828 * 119.91295 * 179.74332 * 13 12 10 15 15 C 1.38462 * 120.24728 * 0.56050 * 14 13 12 16 16 C 1.38402 * 120.32580 * 359.69644 * 15 14 13 17 17 F 1.35098 * 119.95946 * 180.02562 * 16 15 14 18 18 C 1.38515 * 120.07933 * 0.02562 * 16 15 14 19 19 F 1.35101 * 120.12513 * 179.97438 * 18 16 15 20 20 H 0.97004 * 119.99566 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00711 * 0.02562 * 9 7 2 22 22 H 1.08001 * 120.04210 * 0.03093 * 13 12 10 23 23 H 1.08000 * 119.87500 * 180.25972 * 14 13 12 24 24 H 1.07998 * 119.83690 * 179.72271 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0463 -1.4001 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.7001 7 6 2.0089 -1.2041 0.0005 8 1 1.4689 -2.1394 0.0005 9 7 3.3778 -1.2041 0.0000 10 6 4.0516 -2.3714 0.0000 11 8 3.4436 -3.4244 0.0054 12 6 5.5276 -2.3714 0.0000 13 6 6.2297 -1.1631 -0.0116 14 6 7.6079 -1.1689 -0.0062 15 6 8.3003 -2.3680 -0.0010 16 6 7.6152 -3.5705 0.0052 17 9 8.2982 -4.7361 0.0108 18 6 6.2301 -3.5804 0.0056 19 9 5.5604 -4.7537 0.0112 20 1 -0.4850 0.8401 -0.0004 21 1 3.8629 -0.3641 -0.0004 22 1 5.6930 -0.2259 -0.0202 23 1 8.1499 -0.2347 -0.0110 24 1 9.3803 -2.3648 -0.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054205979.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:13 Heat of formation + Delta-G solvation = -118.218025 kcal Electronic energy + Delta-G solvation = -15011.067953 eV Core-core repulsion = 11945.785629 eV Total energy + Delta-G solvation = -3065.282324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.49366 -49.56839 -40.88918 -39.05152 -36.24038 -34.01962 -32.17804 -31.35483 -27.43003 -24.89005 -23.66632 -21.69209 -20.85762 -19.11169 -18.34633 -17.93617 -17.41459 -17.23336 -16.81905 -16.08221 -15.75859 -15.59320 -15.54121 -15.27316 -14.75811 -14.30690 -13.90955 -13.18900 -13.00599 -12.95238 -12.70947 -12.48993 -11.98927 -11.63946 -10.71003 -10.41732 -10.12457 -9.82110 -8.53279 -6.12575 -0.43778 -0.11519 1.26876 1.35397 1.43944 1.80574 2.17548 2.44357 2.52048 2.86971 3.12042 3.34148 3.60570 3.73033 3.89784 4.15760 4.57860 4.76449 4.94777 5.03845 5.16537 5.40716 5.69737 5.80670 6.42120 6.69867 7.17838 7.74675 8.63067 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.008067 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.469581 B = 3470.243883 C = 4114.859976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.962 3.038 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.222 1.222 7 C -0.337 4.337 8 H 0.056 0.944 9 N -0.557 5.557 10 C 0.468 3.532 11 O -0.623 6.623 12 C -0.138 4.138 13 C -0.081 4.081 14 C -0.076 4.076 15 C -0.091 4.091 16 C 0.051 3.949 17 F -0.135 7.135 18 C 0.072 3.928 19 F -0.139 7.139 20 H 0.286 0.714 21 H 0.393 0.607 22 H 0.158 0.842 23 H 0.201 0.799 24 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.810 6.233 -0.020 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.780 3.220 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.145 1.145 7 C -0.466 4.466 8 H 0.075 0.925 9 N -0.196 5.196 10 C 0.258 3.742 11 O -0.510 6.510 12 C -0.142 4.142 13 C -0.100 4.100 14 C -0.094 4.094 15 C -0.110 4.110 16 C 0.031 3.969 17 F -0.114 7.114 18 C 0.050 3.950 19 F -0.117 7.117 20 H 0.096 0.904 21 H 0.231 0.769 22 H 0.175 0.825 23 H 0.218 0.782 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 20.147 5.565 -0.016 20.902 hybrid contribution -0.817 -0.311 0.006 0.874 sum 19.331 5.255 -0.009 20.032 Atomic orbital electron populations 1.69774 1.08352 1.30046 1.47324 1.26295 0.96614 1.03101 0.95028 0.85425 0.79976 0.75905 0.80722 1.17198 1.19210 1.14527 1.19084 0.80972 0.95524 1.50982 0.92539 1.41816 1.06105 1.07058 1.64614 1.18195 0.87455 0.84101 0.84487 1.90680 1.70763 1.32597 1.56993 1.20031 0.92684 0.94117 1.07409 1.21683 0.96151 0.95625 0.96524 1.21572 0.91958 0.99840 0.96008 1.21731 1.03217 0.88451 0.97605 1.17820 0.86457 0.84143 1.08469 1.91503 1.78833 1.46738 1.94321 1.18189 0.89575 0.81518 1.05676 1.91509 1.81127 1.45505 1.93596 0.90443 0.76899 0.82464 0.78176 0.78972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.68 13.95 21.68 0.30 -53.38 14 2 C -0.01 -0.51 5.50 84.95 0.47 -0.04 14 3 Si 0.96 35.79 27.74 68.60 1.90 37.70 14 4 H -0.25 -8.58 7.11 99.48 0.71 -7.87 14 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 14 6 H -0.22 -6.61 6.52 99.48 0.65 -5.96 14 7 C -0.34 -19.81 10.16 84.09 0.85 -18.95 14 8 H 0.06 3.99 7.38 -2.91 -0.02 3.97 14 9 N -0.56 -26.89 5.04 -309.83 -1.56 -28.45 14 10 C 0.47 23.48 7.72 86.71 0.67 24.15 14 11 O -0.62 -38.44 14.91 -4.04 -0.06 -38.50 14 12 C -0.14 -5.10 5.88 -20.06 -0.12 -5.22 14 13 C -0.08 -1.90 9.54 22.54 0.21 -1.69 14 14 C -0.08 -1.07 10.02 22.23 0.22 -0.85 14 15 C -0.09 -1.47 10.01 22.36 0.22 -1.24 14 16 C 0.05 1.39 7.30 22.37 0.16 1.56 14 17 F -0.14 -3.83 17.18 44.97 0.77 -3.05 14 18 C 0.07 2.68 7.29 22.72 0.17 2.85 14 19 F -0.14 -6.38 15.46 44.97 0.70 -5.68 14 20 H 0.29 15.06 8.31 -92.71 -0.77 14.29 14 21 H 0.39 14.99 3.79 -92.71 -0.35 14.64 14 22 H 0.16 3.03 6.40 -2.91 -0.02 3.02 14 23 H 0.20 0.69 8.06 -2.91 -0.02 0.67 14 24 H 0.19 1.38 8.06 -2.91 -0.02 1.35 14 Total: -1.00 -81.57 230.44 5.77 -75.80 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.85 Total: 15.01 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 2.86 Total: 0.57 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.26 Total: -81.83 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.06 Total: -38.50 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 1.47 Total: -8.74 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 1.90 Total: 37.70 kcal Total: -81.57 5.77 -75.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054205979.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.421 kcal (2) G-P(sol) polarization free energy of solvation -81.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds